BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0442.p (348 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774533.1| TRAP-type C4-dicarboxylate transport system ... 712 0.0 ref|YP_003773939.1| TRAP-type C4-dicarboxylate transport system ... 634 e-180 ref|NP_768810.1| ABC transporter substrate-binding protein [Brad... 483 e-134 ref|YP_001889841.1| TRAP dicarboxylate transporter DctP subunit ... 474 e-132 ref|YP_001239281.1| putative TRAP-type C4-dicarboxylate transpor... 459 e-127 ref|YP_001206706.1| putative TRAP-type C4-dicarboxylate transpor... 456 e-126 ref|YP_002499559.1| TRAP dicarboxylate transporter subunit DctP ... 456 e-126 ref|YP_001769614.1| TRAP dicarboxylate transporter subunit DctP ... 451 e-124 ref|YP_001416442.1| TRAP dicarboxylate transporter subunit DctP ... 448 e-124 ref|YP_002945193.1| TRAP dicarboxylate transporter subunit DctP ... 448 e-124 >ref|YP_003774533.1| TRAP-type C4-dicarboxylate transport system periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ62625.1| TRAP-type C4-dicarboxylate transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 348 Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/348 (99%), Positives = 348/348 (100%) Query: 1 MNQDNSKPGKTSVSRRQLLKAGAVGAALPLFSIISRPANAAEFNYKFATGQDPSHPVNKR 60 MNQDNSKPGKTSVSRRQLLKAGAVGAALPLFSI+SRPANAAEFNYKFATGQDPSHPVNKR Sbjct: 1 MNQDNSKPGKTSVSRRQLLKAGAVGAALPLFSIMSRPANAAEFNYKFATGQDPSHPVNKR 60 Query: 61 AQQAIDRIREATGGRLDIKLFPANQLGSDTDLMSQIRNGGVEFFNQASVVLSTLVPAAGI 120 AQQAIDRIREATGGRLDIKLFPANQLGSDTDLMSQIRNGGVEFFNQASVVLSTLVPAAGI Sbjct: 61 AQQAIDRIREATGGRLDIKLFPANQLGSDTDLMSQIRNGGVEFFNQASVVLSTLVPAAGI 120 Query: 121 VNTGFAFHDYKEVWQAMDGPLGAYVRAQIEKVGLLTMSKPWDNGFRQITTSTKPIKTAAD 180 VNTGFAFHDYKEVWQAMDGPLGAYVRAQIEKVGLLTMSKPWDNGFRQITTSTKPIKTAAD Sbjct: 121 VNTGFAFHDYKEVWQAMDGPLGAYVRAQIEKVGLLTMSKPWDNGFRQITTSTKPIKTAAD 180 Query: 181 LKGLKLRVPAAPMLTSLFSALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEV 240 LKGLKLRVPAAPMLTSLFSALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEV Sbjct: 181 LKGLKLRVPAAPMLTSLFSALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEV 240 Query: 241 QKFCTISNHVWDAYWILGNRRAFEKLPKDIQEIVRRELDKAATDERADIASLSGFARNDL 300 QKFCTISNHVWDAYWILGNRRAFEKLPKDIQEIVRRELDKAATDERADIASLSGFARNDL Sbjct: 241 QKFCTISNHVWDAYWILGNRRAFEKLPKDIQEIVRRELDKAATDERADIASLSGFARNDL 300 Query: 301 QGKGVQIIEADKNSFKEALARGSFYKDLRAKFGDDAWKLLQNSVGSLG 348 QGKGVQIIEADKNSFKEALARGSFYKDLRAKFGDDAWKLLQNSVGSLG Sbjct: 301 QGKGVQIIEADKNSFKEALARGSFYKDLRAKFGDDAWKLLQNSVGSLG 348 >ref|YP_003773939.1| TRAP-type C4-dicarboxylate transport system periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ62031.1| TRAP-type C4-dicarboxylate transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 345 Score = 634 bits (1634), Expect = e-180, Method: Compositional matrix adjust. Identities = 301/344 (87%), Positives = 326/344 (94%) Query: 5 NSKPGKTSVSRRQLLKAGAVGAALPLFSIISRPANAAEFNYKFATGQDPSHPVNKRAQQA 64 N + K V+RR +LKAGAVGAALPLFSI+SRPA+AAEF+YKFATGQDPSHPVNKRAQ+A Sbjct: 2 NDERAKKQVTRRNMLKAGAVGAALPLFSILSRPASAAEFSYKFATGQDPSHPVNKRAQEA 61 Query: 65 IDRIREATGGRLDIKLFPANQLGSDTDLMSQIRNGGVEFFNQASVVLSTLVPAAGIVNTG 124 IDRIR AT GRL+IKLFPANQLGSDTDLMSQ+RNGGVEFFNQA+ VLSTLVPAAGIVNTG Sbjct: 62 IDRIRNATNGRLEIKLFPANQLGSDTDLMSQVRNGGVEFFNQANTVLSTLVPAAGIVNTG 121 Query: 125 FAFHDYKEVWQAMDGPLGAYVRAQIEKVGLLTMSKPWDNGFRQITTSTKPIKTAADLKGL 184 FAFHDY VW+AMDGPLGA+VRAQIEKVGLLTMSKPWDNGFRQITTSTKP++ A D+KGL Sbjct: 122 FAFHDYGAVWKAMDGPLGAHVRAQIEKVGLLTMSKPWDNGFRQITTSTKPVRNAGDVKGL 181 Query: 185 KLRVPAAPMLTSLFSALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEVQKFC 244 KLRVPAAPMLTSLFSALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEVQKFC Sbjct: 182 KLRVPAAPMLTSLFSALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEVQKFC 241 Query: 245 TISNHVWDAYWILGNRRAFEKLPKDIQEIVRRELDKAATDERADIASLSGFARNDLQGKG 304 TISNHVWDAYWILGNRRAFEKLPKDIQEIVRRELDKAA+DERADIA+ SGFARNDL KG Sbjct: 242 TISNHVWDAYWILGNRRAFEKLPKDIQEIVRRELDKAASDERADIAAFSGFARNDLASKG 301 Query: 305 VQIIEADKNSFKEALARGSFYKDLRAKFGDDAWKLLQNSVGSLG 348 +QI+EADK+SFKEALAR +FYKD+RAKFG+DAWKLL+ SVG+LG Sbjct: 302 LQIVEADKDSFKEALARANFYKDMRAKFGEDAWKLLEGSVGALG 345 >ref|NP_768810.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC47435.1| blr2170 [Bradyrhizobium japonicum USDA 110] Length = 355 Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust. Identities = 224/346 (64%), Positives = 282/346 (81%), Gaps = 5/346 (1%) Query: 2 NQDNSKPGKTSVSRRQLLKAGAVGAALPLFSIISRPANAAEFNYKFATGQDPSHPVNKRA 61 N SKPG S+SRR LL A +PL I++RPA+AAEF YKFATGQDP+HPVN RA Sbjct: 14 NMTASKPG--SISRRSLLMAATT---VPLCGILTRPASAAEFVYKFATGQDPTHPVNIRA 68 Query: 62 QQAIDRIREATGGRLDIKLFPANQLGSDTDLMSQIRNGGVEFFNQASVVLSTLVPAAGIV 121 Q+AIDRIREAT GRL+I+LFPANQLGSDT+L++Q+R+GGVEFFNQ+S +L+TLVP+AGIV Sbjct: 69 QEAIDRIREATSGRLEIRLFPANQLGSDTELLTQVRSGGVEFFNQSSSILATLVPSAGIV 128 Query: 122 NTGFAFHDYKEVWQAMDGPLGAYVRAQIEKVGLLTMSKPWDNGFRQITTSTKPIKTAADL 181 NTGFAF DY VW+AMDG LG Y+RAQI K ++ +SK WDNGFRQ+T+S + ++T DL Sbjct: 129 NTGFAFADYDSVWKAMDGDLGTYIRAQIAKTPIMAVSKAWDNGFRQVTSSGREVRTPDDL 188 Query: 182 KGLKLRVPAAPMLTSLFSALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEVQ 241 K ++RVP AP+LTSLF ALGA PTPINFNEVYS+LQTK+V+GQENPL II+TARLYEVQ Sbjct: 189 KNFQIRVPPAPLLTSLFKALGAGPTPINFNEVYSALQTKVVDGQENPLPIIATARLYEVQ 248 Query: 242 KFCTISNHVWDAYWILGNRRAFEKLPKDIQEIVRRELDKAATDERADIASLSGFARNDLQ 301 C+++ HVWD YWILGN+RAFE+LPKD+QEIV RELD++A D+RADIA LS R DL Sbjct: 249 STCSLTGHVWDGYWILGNKRAFERLPKDVQEIVTRELDRSAVDQRADIAKLSQSLRADLS 308 Query: 302 GKGVQIIEADKNSFKEALARGSFYKDLRAKFGDDAWKLLQNSVGSL 347 KG++ I+ D+ +F++AL++ SFY D + KFG++AW L+ + G L Sbjct: 309 TKGLKFIDVDRAAFRQALSKTSFYADWKGKFGEEAWSHLEKAAGQL 354 >ref|YP_001889841.1| TRAP dicarboxylate transporter DctP subunit [Burkholderia phytofirmans PsJN] gb|ACD20470.1| TRAP dicarboxylate transporter, DctP subunit [Burkholderia phytofirmans PsJN] Length = 347 Score = 474 bits (1220), Expect = e-132, Method: Compositional matrix adjust. Identities = 223/337 (66%), Positives = 276/337 (81%), Gaps = 1/337 (0%) Query: 13 VSRRQLLKAGA-VGAALPLFSIISRPANAAEFNYKFATGQDPSHPVNKRAQQAIDRIREA 71 +SRR LKAGA + AA+PL+S+ R A EF+YK ATGQDP+HPVN RAQ+AI+ IREA Sbjct: 11 ISRRSFLKAGATLSAAVPLWSVSRRAMAAPEFSYKLATGQDPTHPVNIRAQEAINHIREA 70 Query: 72 TGGRLDIKLFPANQLGSDTDLMSQIRNGGVEFFNQASVVLSTLVPAAGIVNTGFAFHDYK 131 T GRLDIKLFP NQLGSDTDL+SQ+RNGGVEFFNQAS +L+TL PAAGIVNTGFAF DY Sbjct: 71 TNGRLDIKLFPQNQLGSDTDLLSQVRNGGVEFFNQASSILATLTPAAGIVNTGFAFKDYD 130 Query: 132 EVWQAMDGPLGAYVRAQIEKVGLLTMSKPWDNGFRQITTSTKPIKTAADLKGLKLRVPAA 191 VW+AMDG LG Y+R QI K GL+++SK WDNGFRQI++ST+ ++ ADLKG K+RVP A Sbjct: 131 AVWKAMDGDLGNYIRGQIGKSGLVSVSKVWDNGFRQISSSTRALRAPADLKGFKIRVPQA 190 Query: 192 PMLTSLFSALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEVQKFCTISNHVW 251 PMLTSLF AL A P PINFNE+YS+LQT +VEGQENPL II+TA+LYEVQK+ ++++HVW Sbjct: 191 PMLTSLFKALDAGPAPINFNELYSALQTGVVEGQENPLPIIATAKLYEVQKYISLTSHVW 250 Query: 252 DAYWILGNRRAFEKLPKDIQEIVRRELDKAATDERADIASLSGFARNDLQGKGVQIIEAD 311 D YWILGNR A+E+LP +++ IV RE +KAA +RADIA LSG R+DL+ KG+ I+ D Sbjct: 251 DGYWILGNRAAWERLPAEMRTIVTREFEKAAMLQRADIAKLSGSLRDDLKAKGITFIDVD 310 Query: 312 KNSFKEALARGSFYKDLRAKFGDDAWKLLQNSVGSLG 348 + SF+ ALA+ SFY D ++K+GD+AW LL+ SVG LG Sbjct: 311 RESFRAALAKTSFYHDWKSKYGDEAWGLLEKSVGKLG 347 >ref|YP_001239281.1| putative TRAP-type C4-dicarboxylate transport system periplasmic protein [Bradyrhizobium sp. BTAi1] gb|ABQ35375.1| putative TRAP-type C4-dicarboxylate transport system, periplasmic component [Bradyrhizobium sp. BTAi1] Length = 337 Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust. Identities = 217/339 (64%), Positives = 267/339 (78%), Gaps = 3/339 (0%) Query: 10 KTSVSRRQLLKAGAVGAALPLFSIISRPANAAEFNYKFATGQDPSHPVNKRAQQAIDRIR 69 + +RRQL+ A A ALP ISR A AAEF K ATGQDPSHPVNKRA++A DRI+ Sbjct: 2 RKGTTRRQLITAAA---ALPFTFAISRYAKAAEFTMKLATGQDPSHPVNKRAREAADRIK 58 Query: 70 EATGGRLDIKLFPANQLGSDTDLMSQIRNGGVEFFNQASVVLSTLVPAAGIVNTGFAFHD 129 +A+GGRL+I L+PANQLGSDTDL+SQ+R G V+ N AS VL+T VP AGIVNTGFAF Sbjct: 59 DASGGRLEINLYPANQLGSDTDLISQVRVGAVDAINIASSVLATRVPLAGIVNTGFAFSS 118 Query: 130 YKEVWQAMDGPLGAYVRAQIEKVGLLTMSKPWDNGFRQITTSTKPIKTAADLKGLKLRVP 189 Y +VW+AMDG LG ++R IEK G + +SKPWDNGFRQ+T+ST+ I+T DLK K+RVP Sbjct: 119 YDQVWKAMDGSLGDHIRKDIEKTGAIALSKPWDNGFRQVTSSTREIRTPDDLKSFKIRVP 178 Query: 190 AAPMLTSLFSALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEVQKFCTISNH 249 AAP+LTSLF ALGA PTPINFNEVY+SLQTK+VEGQENPL II+TA+LYEVQK+C++++H Sbjct: 179 AAPILTSLFQALGAGPTPINFNEVYTSLQTKVVEGQENPLPIIATAKLYEVQKYCSLTSH 238 Query: 250 VWDAYWILGNRRAFEKLPKDIQEIVRRELDKAATDERADIASLSGFARNDLQGKGVQIIE 309 VWDAYWIL NR AF +LP D+Q IV RE + +A DERADIA+LS R DL KG ++ Sbjct: 239 VWDAYWILCNRAAFTRLPADLQAIVTREFNASADDERADIAALSQSLRADLAAKGFTFVD 298 Query: 310 ADKNSFKEALARGSFYKDLRAKFGDDAWKLLQNSVGSLG 348 DK +F+ AL + SFYKD R KFG++AW +LQ++VG LG Sbjct: 299 VDKTAFRAALGKSSFYKDWRGKFGEEAWTILQSNVGELG 337 >ref|YP_001206706.1| putative TRAP-type C4-dicarboxylate transport system binding periplasmic protein DctP [Bradyrhizobium sp. ORS 278] emb|CAL78489.1| putative TRAP-type C4-dicarboxylate transport system, periplasmic component (dctP-like) [Bradyrhizobium sp. ORS 278] Length = 340 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 216/339 (63%), Positives = 268/339 (79%), Gaps = 2/339 (0%) Query: 10 KTSVSRRQLLKAGAVGAALPLFSIISRPANAAEFNYKFATGQDPSHPVNKRAQQAIDRIR 69 + +RR+ + VGAA+ F+ SR A AAEF K ATGQDPSHPVNKRA++A DRI+ Sbjct: 4 RKGTTRRRFMAGAMVGAAVLPFT--SRFAKAAEFTMKLATGQDPSHPVNKRAREAADRIK 61 Query: 70 EATGGRLDIKLFPANQLGSDTDLMSQIRNGGVEFFNQASVVLSTLVPAAGIVNTGFAFHD 129 EA+GGRL+I ++PANQLGSDTDL+SQ+R G V+ N +S VL+T VP AGIVNTGFAF Sbjct: 62 EASGGRLEINIYPANQLGSDTDLISQVRVGAVDAINISSSVLATRVPLAGIVNTGFAFTS 121 Query: 130 YKEVWQAMDGPLGAYVRAQIEKVGLLTMSKPWDNGFRQITTSTKPIKTAADLKGLKLRVP 189 Y +VW+AMDG LG ++R IEK G + +SKPWDNGFRQ+T+ST+ IKT DLK K+RVP Sbjct: 122 YDQVWKAMDGSLGDHIRKDIEKTGAIALSKPWDNGFRQVTSSTREIKTPDDLKSFKIRVP 181 Query: 190 AAPMLTSLFSALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEVQKFCTISNH 249 AAP+LTSLF ALGA PTPINFNEVY+SLQTK+VEGQENPL II+TA+LYEVQK+C++++H Sbjct: 182 AAPILTSLFQALGAGPTPINFNEVYTSLQTKVVEGQENPLPIIATAKLYEVQKYCSLTSH 241 Query: 250 VWDAYWILGNRRAFEKLPKDIQEIVRRELDKAATDERADIASLSGFARNDLQGKGVQIIE 309 VWDAYWILGNR A KLP D+Q +V +E K+A DERADIA+LS R DL KG ++ Sbjct: 242 VWDAYWILGNRAALGKLPSDLQVLVTQEFGKSADDERADIAALSQSLRADLAAKGFTFVD 301 Query: 310 ADKNSFKEALARGSFYKDLRAKFGDDAWKLLQNSVGSLG 348 DK +F+ AL + SFYKD R KFG+DAWK+LQ++VG LG Sbjct: 302 VDKEAFRTALGKTSFYKDWRGKFGEDAWKILQSNVGELG 340 >ref|YP_002499559.1| TRAP dicarboxylate transporter subunit DctP [Methylobacterium nodulans ORS 2060] gb|ACL59256.1| TRAP dicarboxylate transporter, DctP subunit [Methylobacterium nodulans ORS 2060] Length = 338 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 215/337 (63%), Positives = 267/337 (79%), Gaps = 3/337 (0%) Query: 12 SVSRRQLLKAGAVGAALPLFSIISRPANAAEFNYKFATGQDPSHPVNKRAQQAIDRIREA 71 ++SRR LL AGA A+LPL +I+ RPANAAEF YK ATGQDP+HPVN RAQ+A++RIREA Sbjct: 5 TLSRRTLL-AGA--ASLPLVTILRRPANAAEFEYKLATGQDPTHPVNLRAQEALNRIREA 61 Query: 72 TGGRLDIKLFPANQLGSDTDLMSQIRNGGVEFFNQASVVLSTLVPAAGIVNTGFAFHDYK 131 +GGRLDIKLFPANQLGSDTDL+SQ+RNG VEFFN ++ +L+T +PAA + NTGFAF DY Sbjct: 62 SGGRLDIKLFPANQLGSDTDLLSQVRNGSVEFFNLSTSILATFIPAASLPNTGFAFKDYD 121 Query: 132 EVWQAMDGPLGAYVRAQIEKVGLLTMSKPWDNGFRQITTSTKPIKTAADLKGLKLRVPAA 191 VW AMDG LG Y+R QI K + T+SK WDNGFR IT+ST+ I+T DLKG K+RVP A Sbjct: 122 AVWAAMDGGLGNYIREQIAKTPIQTVSKAWDNGFRHITSSTREIRTPEDLKGFKIRVPPA 181 Query: 192 PMLTSLFSALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEVQKFCTISNHVW 251 PMLTSLF AL A P+NFNE+YS+LQTK+ EGQENPLAI +T RLYEVQK C+++ HVW Sbjct: 182 PMLTSLFKALEAGAAPLNFNELYSALQTKIFEGQENPLAITATTRLYEVQKSCSLTGHVW 241 Query: 252 DAYWILGNRRAFEKLPKDIQEIVRRELDKAATDERADIASLSGFARNDLQGKGVQIIEAD 311 D YWILGN+RAF++LP+D++ +V RELD++A D+RADI LS R +L KG+ IE + Sbjct: 242 DGYWILGNKRAFQRLPEDLRALVTRELDRSADDQRADIVRLSASLRQELTAKGITFIEVN 301 Query: 312 KNSFKEALARGSFYKDLRAKFGDDAWKLLQNSVGSLG 348 ++ F++AL R +FYKD RAKFGD AW L+ G L Sbjct: 302 RDPFRDALGRTTFYKDWRAKFGDAAWGHLEAVSGKLA 338 >ref|YP_001769614.1| TRAP dicarboxylate transporter subunit DctP [Methylobacterium sp. 4-46] gb|ACA17180.1| TRAP dicarboxylate transporter, DctP subunit [Methylobacterium sp. 4-46] Length = 337 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 214/338 (63%), Positives = 264/338 (78%), Gaps = 3/338 (0%) Query: 11 TSVSRRQLLKAGAVGAALPLFSIISRPANAAEFNYKFATGQDPSHPVNKRAQQAIDRIRE 70 T++SRR LL AGA A++PL +++ RPANAAEF YK ATGQDP+HPVN RAQ+A++RIRE Sbjct: 3 TTLSRRTLL-AGA--ASIPLVTVLRRPANAAEFEYKLATGQDPTHPVNIRAQEALNRIRE 59 Query: 71 ATGGRLDIKLFPANQLGSDTDLMSQIRNGGVEFFNQASVVLSTLVPAAGIVNTGFAFHDY 130 A+ GRLDIKLFPANQLGSDTDL+SQ+RNG VEFFN ++ +L+T V AA + NTGFAF DY Sbjct: 60 ASNGRLDIKLFPANQLGSDTDLLSQVRNGSVEFFNLSTSILATFVAAASLPNTGFAFKDY 119 Query: 131 KEVWQAMDGPLGAYVRAQIEKVGLLTMSKPWDNGFRQITTSTKPIKTAADLKGLKLRVPA 190 VW AMDG LGAY+R QI K + +SK WDNGFR IT+ST+ I+T DLKG K+RVP Sbjct: 120 TAVWAAMDGGLGAYIRDQIAKTPIQAVSKVWDNGFRHITSSTREIRTPEDLKGFKIRVPP 179 Query: 191 APMLTSLFSALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEVQKFCTISNHV 250 APMLTSLF AL A P+NFNE+YS+LQTK+ EGQENPLAI +T RLYEVQK C+++ HV Sbjct: 180 APMLTSLFKALDAGAAPLNFNELYSALQTKIFEGQENPLAITATTRLYEVQKSCSLTGHV 239 Query: 251 WDAYWILGNRRAFEKLPKDIQEIVRRELDKAATDERADIASLSGFARNDLQGKGVQIIEA 310 WD YWILGN+RA ++LP+D++ +V RELDK+A D+RADI L+ R DL KG+ IE Sbjct: 240 WDGYWILGNKRAVQRLPEDLRALVTRELDKSADDQRADILRLNTTLRQDLTAKGITFIEV 299 Query: 311 DKNSFKEALARGSFYKDLRAKFGDDAWKLLQNSVGSLG 348 D+ F++AL R +FYKD RAKFGD AW L+ G L Sbjct: 300 DREPFRDALGRTTFYKDWRAKFGDAAWGHLEAVSGKLA 337 >ref|YP_001416442.1| TRAP dicarboxylate transporter subunit DctP [Xanthobacter autotrophicus Py2] gb|ABS66785.1| TRAP dicarboxylate transporter, DctP subunit [Xanthobacter autotrophicus Py2] Length = 345 Score = 448 bits (1153), Expect = e-124, Method: Compositional matrix adjust. Identities = 216/347 (62%), Positives = 268/347 (77%), Gaps = 4/347 (1%) Query: 2 NQDNSKPGKTSVSRRQLLKAGAVGAALPLFSIISRPANAAEFNYKFATGQDPSHPVNKRA 61 N SK ++RR LL A A A+PL II+R A AAEF YK ATGQDP+HPVNKRA Sbjct: 3 NPPASKGLAQGLTRRTLLTAAA---AIPLAGIITR-ARAAEFTYKLATGQDPTHPVNKRA 58 Query: 62 QQAIDRIREATGGRLDIKLFPANQLGSDTDLMSQIRNGGVEFFNQASVVLSTLVPAAGIV 121 Q+A RI EAT GRL+IK+FPANQLGSDTDL++Q+R+GGVE FN ++ +L+TLVP GIV Sbjct: 59 QEAAQRILEATSGRLEIKVFPANQLGSDTDLLTQVRSGGVELFNLSASILATLVPVTGIV 118 Query: 122 NTGFAFHDYKEVWQAMDGPLGAYVRAQIEKVGLLTMSKPWDNGFRQITTSTKPIKTAADL 181 NTGFAF DY VW+++DG LG Y+R QI K GL+ K WDNGFRQ+T+ST+ I+T D+ Sbjct: 119 NTGFAFPDYDTVWKSVDGGLGTYIREQIAKAGLVAPIKFWDNGFRQVTSSTREIRTPEDM 178 Query: 182 KGLKLRVPAAPMLTSLFSALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEVQ 241 KG K+RVP APMLTS+F +LGA TPINFNE+YS+LQTK+VEGQENPLAIIS+ARLYEVQ Sbjct: 179 KGFKIRVPPAPMLTSVFKSLGAGATPINFNELYSALQTKVVEGQENPLAIISSARLYEVQ 238 Query: 242 KFCTISNHVWDAYWILGNRRAFEKLPKDIQEIVRRELDKAATDERADIASLSGFARNDLQ 301 K C+++ HVWD Y ILGNRRAF LP+D++ I+ RE D++ DERADIA+LS R DL Sbjct: 239 KSCSMTGHVWDGYLILGNRRAFAALPEDLRTILVREFDRSGADERADIAALSQSLRADLT 298 Query: 302 GKGVQIIEADKNSFKEALARGSFYKDLRAKFGDDAWKLLQNSVGSLG 348 KG+ I+ D+ F++ LA SFY D RAK+G++AW LL+ SVG LG Sbjct: 299 AKGITFIDVDREPFRKTLAETSFYADWRAKYGNEAWSLLEASVGKLG 345 >ref|YP_002945193.1| TRAP dicarboxylate transporter subunit DctP [Variovorax paradoxus S110] gb|ACS19927.1| TRAP dicarboxylate transporter, DctP subunit [Variovorax paradoxus S110] Length = 343 Score = 448 bits (1152), Expect = e-124, Method: Compositional matrix adjust. Identities = 209/342 (61%), Positives = 270/342 (78%), Gaps = 3/342 (0%) Query: 7 KPGKTSVSRRQLLKAGAVGAALPLFSIISRPANAAEFNYKFATGQDPSHPVNKRAQQAID 66 KP ++RR LL AGA ALPLFSI++R A+AAEF K+ATGQDP+HPVN RA++A D Sbjct: 5 KPIPAKLNRRLLLVAGA---ALPLFSIVTRRADAAEFELKYATGQDPTHPVNLRAKEAHD 61 Query: 67 RIREATGGRLDIKLFPANQLGSDTDLMSQIRNGGVEFFNQASVVLSTLVPAAGIVNTGFA 126 RIREAT GR++IKLFPANQLGSDTDL++Q+RNG VEFFN +S++LST VP +GI + GFA Sbjct: 62 RIREATSGRVNIKLFPANQLGSDTDLLAQVRNGSVEFFNLSSLILSTFVPVSGITSVGFA 121 Query: 127 FHDYKEVWQAMDGPLGAYVRAQIEKVGLLTMSKPWDNGFRQITTSTKPIKTAADLKGLKL 186 F Y +VW+AMDG LG ++RA+I K + T+S+ WDNGFR +T+S + IK+AADLKG K+ Sbjct: 122 FKGYDDVWKAMDGDLGNHIRAEIAKTPIFTVSRIWDNGFRHVTSSGREIKSAADLKGFKV 181 Query: 187 RVPAAPMLTSLFSALGASPTPINFNEVYSSLQTKLVEGQENPLAIISTARLYEVQKFCTI 246 RVP AP LTSLF AL A+P+PINFNEVY++LQTK+VEGQENPLAIISTARLYEVQK C++ Sbjct: 182 RVPPAPPLTSLFKALDAAPSPINFNEVYTALQTKVVEGQENPLAIISTARLYEVQKTCSL 241 Query: 247 SNHVWDAYWILGNRRAFEKLPKDIQEIVRRELDKAATDERADIASLSGFARNDLQGKGVQ 306 + HVWD YW+LGN+RAF+KLP D+Q+++ RE+DK+A D+RAD+A LS +DL+ KGV Sbjct: 242 TGHVWDGYWVLGNKRAFQKLPSDVQQVITREIDKSAIDQRADVARLSSSLVSDLKAKGVG 301 Query: 307 IIEADKNSFKEALARGSFYKDLRAKFGDDAWKLLQNSVGSLG 348 I+ + F+ LA FY + ++K+G W LL+ G LG Sbjct: 302 FIDVQQEDFRNKLASTGFYGEWKSKYGAAPWDLLEKVSGKLG 343