BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0428.p (676 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774546.1| flagellar hook-associated protein 2 [Herbasp... 1303 0.0 ref|YP_003775475.1| flagellar hook-associated 2 protein [Herbasp... 917 0.0 emb|CAP19679.2| flagellar hook-associated protein 2 [Herbaspiril... 911 0.0 ref|YP_003776924.1| flagellar capping protein [Herbaspirillum se... 736 0.0 ref|YP_587382.1| flagellar filament capping protein [Cupriavidus... 166 1e-38 ref|NP_841634.1| flagellar hook-associated protein 2 [Nitrosomon... 159 1e-36 ref|YP_004295230.1| flagellar hook-associated 2 domain-containin... 157 8e-36 ref|YP_584415.1| flagellar filament capping-like protein (fliD-l... 154 7e-35 ref|YP_747175.1| flagellar hook-associated 2 domain-containing p... 154 8e-35 ref|YP_934209.1| flagellar hook-associated protein [Azoarcus sp.... 152 2e-34 >ref|YP_003774546.1| flagellar hook-associated protein 2 [Herbaspirillum seropedicae SmR1] emb|CAP19674.1| flagellar hook-associated protein 2 [Herbaspirillum seropedicae] gb|ADJ62638.1| flagellar hook-associated protein 2 [Herbaspirillum seropedicae SmR1] Length = 676 Score = 1303 bits (3371), Expect = 0.0, Method: Compositional matrix adjust. Identities = 671/676 (99%), Positives = 674/676 (99%) Query: 1 MATSTGTISTSAGPLDVATLVNQLISVESKSRLTPLKNKESSFNTLISAYGSLKNAFTSY 60 MATSTGTISTSAGPLDVATLVNQLISVESKSRLTPLKNKESSFNTLISAYGSLKNAFTSY Sbjct: 1 MATSTGTISTSAGPLDVATLVNQLISVESKSRLTPLKNKESSFNTLISAYGSLKNAFTSY 60 Query: 61 QSALKTLTAASFSAQKTTLSNAGTGTNLTTDPFTADTNTDESTKVLAQKLQSAGFTAGQT 120 QSALKTLTAASFSAQKTTLSNAGTGTNLTTDPFTADTNTDESTKVLAQKLQSAGFTAGQT Sbjct: 61 QSALKTLTAASFSAQKTTLSNAGTGTNLTTDPFTADTNTDESTKVLAQKLQSAGFTAGQT 120 Query: 121 FNAGDSVAIKVGTNQPTFITLQANATLAGVRDAINAAKAGVTASITTDGSGDHLVLESNT 180 FNAGDSVAIKVGTNQPTFITLQANATLAGVRDAINAAKAGVTASITTDGSGDHLVLESNT Sbjct: 121 FNAGDSVAIKVGTNQPTFITLQANATLAGVRDAINAAKAGVTASITTDGSGDHLVLESNT 180 Query: 181 GDTANTIRITANNSLSSLAYDPSSNVSSTVTQIQAPRDASKAAAGKYNIAVNQLAQAVKV 240 G TANTI+ITANNSLSSLAYDPSSNVSSTVTQIQAPRDASKAAAGKYNIAVNQLAQAVKV Sbjct: 181 GGTANTIKITANNSLSSLAYDPSSNVSSTVTQIQAPRDASKAAAGKYNIAVNQLAQAVKV 240 Query: 241 SSAGIAPGSTFDNGVLAIKTGNGSTAIIQPKTNSLAGVRDAINASDAGVNASIVNDGTND 300 SSAGIAPGSTFDNGVLAIKTGNGSTAIIQPKTNSLAGVRDAINASDAGVNASIVNDGTND Sbjct: 241 SSAGIAPGSTFDNGVLAIKTGNGSTAIIQPKTNSLAGVRDAINASDAGVNASIVNDGTND 300 Query: 301 HLVLTAKDAGSANTLRVTGTGNFAAFNFDPSGTITTTGVATNQTYSSGSLALQVGSKSFT 360 HLVLTAKDAGSANTLRVTGTGNFAAFNFDPSGTITTTGVATNQTYSSGSLALQVGSKSFT Sbjct: 301 HLVLTAKDAGSANTLRVTGTGNFAAFNFDPSGTITTTGVATNQTYSSGSLALQVGSKSFT 360 Query: 361 INPTDLDGSGAIGLNDVMKAINDANTGVTASITNDGSKDHLVLTPTGTDAVKLTGAGDYS 420 INPTDLDGSGAIGLNDVMKAINDANTGVTASITNDGSKDHLVLTP+GTDAVKLTGAGDYS Sbjct: 361 INPTDLDGSGAIGLNDVMKAINDANTGVTASITNDGSKDHLVLTPSGTDAVKLTGAGDYS 420 Query: 421 DLAGSTMGQLAKAQDAKLTVDGVTVTITSNKVTNVISGVTLNLSKVTTSADNFSLSINND 480 DLAGS+MGQLAKAQDAKLTVDGVTVT TSNKVTNVISGVTLNLSKVTTSADNFSLSINND Sbjct: 421 DLAGSSMGQLAKAQDAKLTVDGVTVTSTSNKVTNVISGVTLNLSKVTTSADNFSLSINND 480 Query: 481 TSGLSTAANTFVTAYNTLAKAVANLTKQTPSTTKGQASTGSPLASESSVLALMGQVRNTM 540 TSGLSTAANTFVTAYNTLAKAVANLTKQTPSTTKGQASTGSPLASESSVLALMGQVRNTM Sbjct: 481 TSGLSTAANTFVTAYNTLAKAVANLTKQTPSTTKGQASTGSPLASESSVLALMGQVRNTM 540 Query: 541 LGALGDNGATNLSQIGISFQKDGTLALDATKLTNAANKDFDGITQLFTSATNGVVPKLQK 600 LGALGDNGATNLSQIGISFQKDGTLALDATKLTNAANKDFDGITQLFTSATNGVVPKLQK Sbjct: 541 LGALGDNGATNLSQIGISFQKDGTLALDATKLTNAANKDFDGITQLFTSATNGVVPKLQK 600 Query: 601 LMDGILGESGVLASKTKGLQDSLKIVTDQQTAANARLQDLKDTYTNQFNRLNVTLATMQS 660 LMDGILGESGVLASKTKGLQDSLKIVTDQQTAANARLQDLKDTYTNQFNRLNVTLATMQS Sbjct: 601 LMDGILGESGVLASKTKGLQDSLKIVTDQQTAANARLQDLKDTYTNQFNRLNVTLATMQS 660 Query: 661 RQSYLTQQLAKLSKSS 676 RQSYLTQQLAKLSKSS Sbjct: 661 RQSYLTQQLAKLSKSS 676 >ref|YP_003775475.1| flagellar hook-associated 2 protein [Herbaspirillum seropedicae SmR1] gb|ADJ63567.1| flagellar hook-associated 2 protein [Herbaspirillum seropedicae SmR1] Length = 690 Score = 917 bits (2371), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/690 (69%), Positives = 575/690 (83%), Gaps = 15/690 (2%) Query: 1 MATSTGTISTSAGPLDVATLVNQLISVESKSRLTPLKNKESSFNTLISAYGSLKNAFTSY 60 MATSTGTISTSAGPLDVATLV+QLIS ES+S+LTPL + SS+NTLISAYGSLK+A ++Y Sbjct: 1 MATSTGTISTSAGPLDVATLVSQLISAESQSQLTPLTTQASSYNTLISAYGSLKSAMSTY 60 Query: 61 QSALKTLTAASFSAQKTTLSNAGTGTNLTTDPFTADTNTDESTKVLAQKLQSAGFTAGQT 120 QSA+K +T+ASFSAQK+++SNAGTG+NLTTDPF+AD N D+STK+LAQK+QSAG ++G T Sbjct: 61 QSAIKAMTSASFSAQKSSVSNAGTGSNLTTDPFSADINGDDSTKILAQKIQSAGISSGTT 120 Query: 121 FNAGDSVAIKVGTNQPTFITLQANATLAGVRDAINAAKAGVTASITTDGSGDHLVLESNT 180 FNAGDS+AIK+GTN P F+TLQAN+TLAGVRDAINA K G TASI TDG+GDHLVLESNT Sbjct: 121 FNAGDSIAIKIGTNSPVFVTLQANSTLAGVRDAINAGKTGATASIVTDGAGDHLVLESNT 180 Query: 181 GDTANTIRITANNSLSSLAYDPSSNVSSTVTQIQAPRDASKAAAGKYNIAVNQLAQAVKV 240 G TANTI++TANNSLS YDPSS+ ST+TQ QAPRDA+KAA+G Y +AV+QLAQA K+ Sbjct: 181 GGTANTIKVTANNSLSGFFYDPSSSTPSTMTQTQAPRDATKAASGNYAVAVSQLAQAEKL 240 Query: 241 SSAGIAPGSTFDNGVLAIKTGNGSTAIIQPKTNSLAGVRDAINASDAGVNASIVNDGTND 300 SSA IAPGSTFDNG+LAIKTG+GST II+P TN+LAGVRDAIN+SDAGVNA+IV+DGTND Sbjct: 241 SSASIAPGSTFDNGLLAIKTGSGSTTIIKPTTNTLAGVRDAINSSDAGVNATIVSDGTND 300 Query: 301 HLVLTAKDAGSANTLRVTGTGNFAAFNFDPSGTITTTGVATNQTYSSGSLALQVGSKSFT 360 HLV+TAK++GS NT+++TGT NFA FN DPSGT+T+ VA+ QTYS+G+L L+VG SF Sbjct: 301 HLVVTAKNSGSTNTIKITGTENFAVFNSDPSGTVTSPNVASGQTYSAGNLTLKVGDSSFN 360 Query: 361 INPTDLDGSGAIGLNDVMKAINDANTGVTASITNDGSKDHLVLTPTG---TDAVKLTGAG 417 I P +GSG I L V AIN+AN GVTASITNDGS DHLVLTPTG T AV LTG Sbjct: 361 IAPV-ANGSGNIDLTQVKLAINNANAGVTASITNDGSNDHLVLTPTGSSATAAVSLTGTS 419 Query: 418 DYSDLAGSTMGQLAKAQDAKLTVDGVTVTITSNKVTNVISGVTLNLSKVTTSADNFSLSI 477 DY+ L+ S MGQL KAQDAKL++DGV VT +NKV NVISGVTLNLSKVTTSADNF+L+I Sbjct: 420 DYAGLSMSGMGQLLKAQDAKLSIDGVNVTSPTNKVENVISGVTLNLSKVTTSADNFTLNI 479 Query: 478 NNDTSGLSTAANTFVTAYNTLAKAVANLTKQTPSTTKGQASTGSPLASESSVLALMGQVR 537 +NDTSG++TAAN+FVTAYNTLAKAVA +T QTPSTT GQA+T +PLASESSV +M Q+R Sbjct: 480 SNDTSGITTAANSFVTAYNTLAKAVAGMTAQTPSTTLGQANTSAPLASESSVQTIMSQLR 539 Query: 538 NTMLGAL-GDNGATNLSQIGISFQKDGTLALDATKLTNAANKDFDGITQLF--------- 587 NT+ + G NG LS IGISFQKDGTLALD+TKL+ AA +F GI LF Sbjct: 540 NTLFSTVDGGNGINTLSDIGISFQKDGTLALDSTKLSTAATNNFAGIANLFAGTDPDPTN 599 Query: 588 -TSATNGVVPKLQKLMDGILGESGVLASKTKGLQDSLKIVTDQQTAANARLQDLKDTYTN 646 TS+ NG+V KLQ LM +L ++G++A+KT GLQ SLKI D+QTA +RL +LKD YTN Sbjct: 600 TTSSKNGIVTKLQTLMTSLLSDNGIIATKTSGLQASLKINQDRQTAVQSRLSNLKDAYTN 659 Query: 647 QFNRLNVTLATMQSRQSYLTQQLAKLSKSS 676 QFN+LN+TL++MQS QSYLTQQLA L+KSS Sbjct: 660 QFNQLNLTLSSMQSTQSYLTQQLANLAKSS 689 >emb|CAP19679.2| flagellar hook-associated protein 2 [Herbaspirillum seropedicae] Length = 690 Score = 911 bits (2355), Expect = 0.0, Method: Compositional matrix adjust. Identities = 478/690 (69%), Positives = 574/690 (83%), Gaps = 15/690 (2%) Query: 1 MATSTGTISTSAGPLDVATLVNQLISVESKSRLTPLKNKESSFNTLISAYGSLKNAFTSY 60 MATSTGTISTSAGPLDVATLV+QLIS ES+S+LTPL + SS+NTLISAYGSLK+A ++Y Sbjct: 1 MATSTGTISTSAGPLDVATLVSQLISAESQSQLTPLTTQASSYNTLISAYGSLKSAMSTY 60 Query: 61 QSALKTLTAASFSAQKTTLSNAGTGTNLTTDPFTADTNTDESTKVLAQKLQSAGFTAGQT 120 QSA+K +T+ASFSAQK+++SNAGTG+NLTTDPF+AD N D+STK+LAQK+QSAG ++G T Sbjct: 61 QSAIKAMTSASFSAQKSSVSNAGTGSNLTTDPFSADINGDDSTKILAQKIQSAGISSGTT 120 Query: 121 FNAGDSVAIKVGTNQPTFITLQANATLAGVRDAINAAKAGVTASITTDGSGDHLVLESNT 180 FNAGDS+AIK+GTN P F+TLQAN+TLAGVRDAINA K G TASI TDG+GDHLVLESNT Sbjct: 121 FNAGDSIAIKIGTNSPVFVTLQANSTLAGVRDAINAGKTGATASIVTDGAGDHLVLESNT 180 Query: 181 GDTANTIRITANNSLSSLAYDPSSNVSSTVTQIQAPRDASKAAAGKYNIAVNQLAQAVKV 240 G TANTI++TANNSLS YDPSS+ ST+TQ QAPRDA+KAA+G Y +AV+QLAQA K+ Sbjct: 181 GGTANTIKVTANNSLSGFFYDPSSSTPSTMTQTQAPRDATKAASGNYAVAVSQLAQAEKL 240 Query: 241 SSAGIAPGSTFDNGVLAIKTGNGSTAIIQPKTNSLAGVRDAINASDAGVNASIVNDGTND 300 SSA IAPGSTFDNG+LAIKTG+GST II+P TN+LAGVRDAIN+SDAGVNA+IV+DGTND Sbjct: 241 SSASIAPGSTFDNGLLAIKTGSGSTTIIKPTTNTLAGVRDAINSSDAGVNATIVSDGTND 300 Query: 301 HLVLTAKDAGSANTLRVTGTGNFAAFNFDPSGTITTTGVATNQTYSSGSLALQVGSKSFT 360 HLV+TAK++GS NT+++TGT NFA FN DPSGT+T+ VA+ QTYS+G+L L+VG SF Sbjct: 301 HLVVTAKNSGSTNTIKITGTENFAVFNSDPSGTVTSPNVASGQTYSAGNLTLKVGDSSFN 360 Query: 361 INPTDLDGSGAIGLNDVMKAINDANTGVTASITNDGSKDHLVLTPTG---TDAVKLTGAG 417 I P +GSG I L V AIN+AN GVTASITNDGS DHLVLTPTG T AV LTG Sbjct: 361 IAPV-ANGSGNIDLTQVKLAINNANAGVTASITNDGSNDHLVLTPTGSSATAAVSLTGTS 419 Query: 418 DYSDLAGSTMGQLAKAQDAKLTVDGVTVTITSNKVTNVISGVTLNLSKVTTSADNFSLSI 477 DY+ L+ S MGQL++ + AKL++DGV VT +NKV NVISGVTLNLSKVTTSADNF+L+I Sbjct: 420 DYAGLSMSGMGQLSRRRTAKLSIDGVNVTSPTNKVENVISGVTLNLSKVTTSADNFTLNI 479 Query: 478 NNDTSGLSTAANTFVTAYNTLAKAVANLTKQTPSTTKGQASTGSPLASESSVLALMGQVR 537 +NDTSG++TAAN+FVTAYNTLAKAVA +T QTPSTT GQA+T +PLASESSV +M Q+R Sbjct: 480 SNDTSGITTAANSFVTAYNTLAKAVAGMTAQTPSTTLGQANTSAPLASESSVQTIMSQLR 539 Query: 538 NTMLGAL-GDNGATNLSQIGISFQKDGTLALDATKLTNAANKDFDGITQLF--------- 587 NT+ + G NG LS IGISFQKDGTLALD+TKL+ AA +F GI LF Sbjct: 540 NTLFSTVDGGNGINTLSDIGISFQKDGTLALDSTKLSTAATNNFAGIANLFAGTDPDPTN 599 Query: 588 -TSATNGVVPKLQKLMDGILGESGVLASKTKGLQDSLKIVTDQQTAANARLQDLKDTYTN 646 TS+ NG+V KLQ LM +L ++G++A+KT GLQ SLKI D+QTA +RL +LKD YTN Sbjct: 600 TTSSKNGIVTKLQTLMTSLLSDNGIIATKTSGLQASLKINQDRQTAVQSRLSNLKDAYTN 659 Query: 647 QFNRLNVTLATMQSRQSYLTQQLAKLSKSS 676 QFN+LN+TL++MQS QSYLTQQLA L+KSS Sbjct: 660 QFNQLNLTLSSMQSTQSYLTQQLANLAKSS 689 >ref|YP_003776924.1| flagellar capping protein [Herbaspirillum seropedicae SmR1] gb|ADJ65016.1| flagellar capping protein [Herbaspirillum seropedicae SmR1] Length = 680 Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/680 (56%), Positives = 506/680 (74%), Gaps = 7/680 (1%) Query: 1 MATSTGTISTSAGPLDVATLVNQLISVESKSRLTPLKNKESSFNTLISAYGSLKNAFTSY 60 MATSTG+ISTSAGPLDVA LVNQL+SVESKSRLTPL +K SFN LISAYG L A T+Y Sbjct: 1 MATSTGSISTSAGPLDVANLVNQLVSVESKSRLTPLASKADSFNALISAYGKLGTALTTY 60 Query: 61 QSALKTLTAASFSAQKTTLSNAGTGTNLTT--DPFTADTNTDESTKVLAQKLQSAGFTAG 118 Q+AL LTAA FSAQK +SN G ++ + D +AD N+D STK AQ ++SAGF +G Sbjct: 61 QNALAELTAAKFSAQKAAVSNTGRSSDGKSGNDAVSADINSDASTKAQAQIIKSAGFASG 120 Query: 119 QTFNAGDSVAIKVGTNQPTFITLQANATLAGVRDAINAAKAGVTASITTDGSGDHLVLES 178 F AGDSVAIKVG P FITL+A+AT+ G+RD INAA+AGVTAS+ D +GDHLVLES Sbjct: 121 HLFKAGDSVAIKVGEASPHFITLKADATINGLRDTINAARAGVTASVVRDDAGDHLVLES 180 Query: 179 NTGDTANTIRITANNSLSSLAYDPSSNVSSTVTQIQAPRDASKAAAGKYNIAVNQLAQAV 238 NT TAN +++ ANNSLS++++D + +TQ QA RDA+ AA G Y I+V QLAQ+ Sbjct: 181 NTAGTANLLKVRANNSLSAISFDAQQSRPGAMTQTQAARDATSAAPGSYAISVEQLAQSH 240 Query: 239 KVSSAGIAPGSTFDNGVLAIKTGNGSTAIIQPKTNSLAGVRDAINASDAGVNASIVNDGT 298 K+SSAGIAPGSTFD GVLAIK G+GST +I+P +N+LAGVRDAINA+ AGVNASIV+DG Sbjct: 241 KLSSAGIAPGSTFDLGVLAIKAGSGSTTLIKPASNTLAGVRDAINAAAAGVNASIVSDGK 300 Query: 299 NDHLVLTAKDAGSANTLRVTGTGNFAAFNFDPSGTITTTGVATNQTYSSGSLALQVGSKS 358 +HLVLTAK++G+ N LR++GTG+FA F+ DPSG +T V + +S G++ L VG+++ Sbjct: 301 QEHLVLTAKESGANNALRISGTGDFAVFSSDPSGNASTASVTPEKRFSQGAVNLSVGART 360 Query: 359 FTINPTDLDGSGAIGLNDVMKAINDANTGVTASITNDGSKD----HLVLTPTGTDAVKLT 414 ++ P A GL DV +AIN+A GV+A++ +G D LVL+ +G+D V L Sbjct: 361 ISLKPASATAGAAPGLADVARAINEAKAGVSATVQREGQGDKAVERLVLSASGSDPVSLR 420 Query: 415 GAGDYSDLAGSTMGQLAKAQDAKLTVDGVTVTITSNKVTNVISGVTLNLSKVTTSADNFS 474 G+GDY+ LA S MGQL K QDA+L++DGV +T TSN + + ISGVTLNL+K T++ D + Sbjct: 421 GSGDYAVLAASAMGQLQKPQDARLSIDGVAITATSNTIKDAISGVTLNLNKTTSATDKLT 480 Query: 475 LSINNDTSGLSTAANTFVTAYNTLAKAVANLTKQTPSTTKGQASTGSPLASESSVLALMG 534 L+I+ND+SG+ A N+FV A+NTLAKA+A +T+Q P+ +GQA LA ES V AL G Sbjct: 481 LAISNDSSGVGAAVNSFVNAFNTLAKAMAEMTRQAPAKVRGQAGEQGLLAGESMVRALTG 540 Query: 535 QVRNTMLGALGDNGATNLSQIGISFQKDGTLALDATKLTNAANKDFDGITQLFTSATNGV 594 ++RN +L ++ N +L+ IG+ F+KDGTL LD+ +L A ++F+ + QLF + G+ Sbjct: 541 ELRNAVLASMPGNALGSLTAIGVGFKKDGTLDLDSARLAKAGERNFEAVAQLF-AGKEGL 599 Query: 595 VPKLQKLMDGILGESGVLASKTKGLQDSLKIVTDQQTAANARLQDLKDTYTNQFNRLNVT 654 V + + L+D +LGE G+LA KT+GLQ SLKIV+DQQ AA ARL +L+D+YTNQFNRLNVT Sbjct: 600 VARTRSLLDKVLGEQGLLAGKTRGLQGSLKIVSDQQAAARARLANLRDSYTNQFNRLNVT 659 Query: 655 LATMQSRQSYLTQQLAKLSK 674 L+ MQ+ Q+YLTQQLA+L + Sbjct: 660 LSKMQASQNYLTQQLARLRR 679 >ref|YP_587382.1| flagellar filament capping protein [Cupriavidus metallidurans CH34] gb|ABF12113.1| flagellar filament capping protein (flagellar hook-associated 2-like protein) [Cupriavidus metallidurans CH34] Length = 490 Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 122/321 (38%), Positives = 177/321 (55%), Gaps = 27/321 (8%) Query: 374 LNDVMKAINDANTGVTASITNDGS--KDHLVLT--PTG-TDAVKLT-----GAGDYSDLA 423 L V AIN AN GVTASI NDGS LV++ TG T++V+++ G SDLA Sbjct: 175 LQGVRDAINKANAGVTASIVNDGSGTPYRLVISSNATGATNSVRMSVNETDGGTGLSDLA 234 Query: 424 G------STMGQLAKAQDAKLTVDGVTVTITSNKVTNVISGVTLNLSKVTTSADNFSLSI 477 M Q AQ+A+LTV+ + V N V + + GV LNL++ TS S+++ Sbjct: 235 AYDPAGTQNMQQTIAAQNAQLTVNNIAVQSKGNSVADAVPGVVLNLTQTGTS----SVTV 290 Query: 478 NNDTSGLSTAANTFVTAYNTLAKAVANLTKQTPSTTKGQASTGSPLASESSVLALMGQVR 537 D S + + FV AYN L A+L+ PST TGSPL +S++ + Q+R Sbjct: 291 QRDNSSIVSGVQAFVAAYNNLQNTAASLSAYDPST-----KTGSPLTGDSTLSIIQSQMR 345 Query: 538 NTMLGALGDNGATNLSQIGISFQKDGTLALDATKLTNAANKDFDGITQLF--TSATNGVV 595 + M N T LSQIGISFQ DGTLALD TKLT+A N + + LF T +G Sbjct: 346 SVMNTPQSGNALTTLSQIGISFQNDGTLALDTTKLTSALNSNPGAVAGLFGNTDGVSGYG 405 Query: 596 PKLQKLMDGILGESGVLASKTKGLQDSLKIVTDQQTAANARLQDLKDTYTNQFNRLNVTL 655 ++ KL+ G+ +G L + T G+ ++LK +++Q R+ + Y QF +L+V + Sbjct: 406 NQINKLVTGLTSSNGALTTATAGINNTLKDLSNQYDETQTRVDAVIANYKTQFTQLDVIM 465 Query: 656 ATMQSRQSYLTQQLAKLSKSS 676 + MQ+ SYLTQQ + ++ +S Sbjct: 466 SQMQNTSSYLTQQFSAMNGTS 486 >ref|NP_841634.1| flagellar hook-associated protein 2 [Nitrosomonas europaea ATCC 19718] emb|CAD85506.1| Flagellar hook-associated protein 2 [Nitrosomonas europaea ATCC 19718] Length = 481 Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 117/353 (33%), Positives = 182/353 (51%), Gaps = 53/353 (15%) Query: 356 SKSFTINPTDLDGSGAIGLNDVMKAINDANTGVTASITNDGSKDHLVLTPTGT---DAVK 412 +K+ TI+P L D+ AIN+AN GVTASI NDGS + LV++ + +A+K Sbjct: 145 AKTITIDP------AKSTLADIRSAINEANAGVTASIVNDGSGNRLVISSKDSGLANALK 198 Query: 413 LT---GAGDYSDLAG-------------STMGQLAKAQDAKLTVDGVTVTITSNKVTNVI 456 ++ G+++D AG S M + A++A + +DG+ VT +SN + + + Sbjct: 199 ISVNDTDGNHTDNAGLSKLAFDASTGGVSNMTETVAARNAVMVIDGIPVTKSSNTINDAL 258 Query: 457 SGVTLNLSKV---TTSADNFSLSINNDTSGLSTAANTFVTAYNTLAKAVANLTKQTPSTT 513 GVT NL K TT+ +L++ D S + A N FV AYN L K + NL++ + Sbjct: 259 EGVTFNLLKANPGTTT----TLTVEKDKSNVEAAVNAFVKAYNDLEKTIGNLSRYDAANK 314 Query: 514 KGQASTGSPLASESSVLALMGQVRNTMLGALGDN-----GATNLSQIGISFQKDGTLALD 568 + TG + M ++N M LG N G +LS++GISFQKDGTLALD Sbjct: 315 QASVLTGD---------STMRMIQNRMRAMLGGNQSAAGGINSLSELGISFQKDGTLALD 365 Query: 569 ATKLTNAANKDFDGITQLFTS-------ATNGVVPKLQKLMDGILGESGVLASKTKGLQD 621 KL+ N I FT+ + G +L +L+DG+ G+++S+ G+ Sbjct: 366 NNKLSAVLNNPDKNIAAFFTTQGGDDTTSVEGFASRLSELIDGMTRSDGLISSRMDGINS 425 Query: 622 SLKIVTDQQTAANARLQDLKDTYTNQFNRLNVTLATMQSRQSYLTQQLAKLSK 674 ++K + Q+ A RL+ ++ QF L+ +A+M +YL QQLA L K Sbjct: 426 TIKGIGKQREALEFRLESVEKRLRAQFTALDTMIASMNQTSNYLQQQLANLPK 478 Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 80/229 (34%), Positives = 124/229 (54%), Gaps = 25/229 (10%) Query: 15 LDVATLVNQLISVESKSRLTPLKNKESSFNTLISAYGSLKNAFTSYQSALKTLT-AASFS 73 LDV+ ++++L+ +E + LT L KE+ +SA+GSLK+ +++Q ++K L A F+ Sbjct: 11 LDVSGIISKLMEIEQQP-LTQLNTKEAKQQAQLSAFGSLKSVLSTFQDSVKALAKPALFN 69 Query: 74 AQKTTLSNAGTGTNLTTDPFTADTNTDESTKVL-AQKLQSAGFTAGQTFNAGDSVAIKVG 132 K TL++ T T+ +A T+ E + AQK++S F T ++ I+ G Sbjct: 70 GYKATLADTTAATVSTSSSASAGTHDIEVQSLAQAQKIKSEAFATTDTVIGSGTLTIEFG 129 Query: 133 TNQP--TF----------ITLQ-ANATLAGVRDAINAAKAGVTASITTDGSGDHLVLESN 179 T TF IT+ A +TLA +R AIN A AGVTASI DGSG+ LV+ S Sbjct: 130 TYNEDGTFTANAEKTAKTITIDPAKSTLADIRSAINEANAGVTASIVNDGSGNRLVISSK 189 Query: 180 TGDTANTIRITANNS---------LSSLAYDPSSNVSSTVTQIQAPRDA 219 AN ++I+ N++ LS LA+D S+ S +T+ A R+A Sbjct: 190 DSGLANALKISVNDTDGNHTDNAGLSKLAFDASTGGVSNMTETVAARNA 238 >ref|YP_004295230.1| flagellar hook-associated 2 domain-containing protein [Nitrosomonas sp. AL212] gb|ADZ27068.1| flagellar hook-associated 2 domain-containing protein [Nitrosomonas sp. AL212] Length = 476 Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 123/375 (32%), Positives = 194/375 (51%), Gaps = 62/375 (16%) Query: 351 ALQVGSKSFTINPTDLDGSGAI-------------------------------GLNDVMK 379 A ++ S+SFT +P+D+ GSG + L ++ Sbjct: 104 AQKIKSESFT-SPSDIIGSGTLTIEFGTYNIDGTFTENLKKASASITIETDQTSLANIRD 162 Query: 380 AINDANTGVTASITNDGSKDHLVLTPTGT---DAVKLTG----------------AGDYS 420 IN A+ GVTASI NDG+ + LVL+ + +A+K+T A D S Sbjct: 163 TINKASIGVTASIVNDGNGNRLVLSSNDSGLSNALKITVSDDDLNNIDNNGLSKLAFDAS 222 Query: 421 DLAGSTMGQLAKAQDAKLTVDGVTVTITSNKVTNVISGVTLNLSKVTTSADNFSLSINND 480 + M + A+DA L +DG+T+T SN +T+ + G+T+NL + SLSI D Sbjct: 223 TGGTANMSETVAARDATLVIDGITITKPSNTITDALQGMTINLFR-ENPGTTTSLSITKD 281 Query: 481 TSGLSTAANTFVTAYNTLAKAVANLTKQTPSTTKGQASTGSPLASESSVLALMGQVRNTM 540 T+ + TA +TFV AYN L K +A+L+ + TG +S+V A+ Q+R + Sbjct: 282 TTSVQTAVSTFVNAYNELQKTIASLSNYDQVNQQASILTG-----DSTVRAVQTQLRGIL 336 Query: 541 LGAL--GDNGATN-LSQIGISFQKDGTLALDATKLTNAANKDFDGITQLFTSATNGVVPK 597 +L G G N LSQ+GISFQKDGTL LD KL + N ++ LF AT+G + Sbjct: 337 NSSLQSGVAGELNTLSQVGISFQKDGTLLLDNGKLNASLNDPTKDVSSLF--ATDGFAVR 394 Query: 598 LQKLMDGILGESGVLASKTKGLQDSLKIVTDQQTAANARLQDLKDTYTNQFNRLNVTLAT 657 L +++DG+L +G++ + G+ S+K + Q+ A +RL+ ++ + QF L+ T+A+ Sbjct: 395 LDRMIDGMLENNGLIDGRMDGINTSIKDINKQREALGSRLEIVEKRFRTQFTALDTTIAS 454 Query: 658 MQSRQSYLTQQLAKL 672 M+ +L QQL+ L Sbjct: 455 MKQTSEFLAQQLSSL 469 Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 124/240 (51%), Gaps = 45/240 (18%) Query: 15 LDVATLVNQLISVESKSRLTPLKNKESSFNTLISAYGSLKNAFTSYQSALKTLTAAS-FS 73 LD+ +++QL+++E + L L KE+ +SAYG+LK+A +++Q +KTL +S F+ Sbjct: 11 LDINGIISQLMAIEQRP-LLQLSTKEARQQAELSAYGNLKSALSTFQGTVKTLANSSLFT 69 Query: 74 AQKTTL-----------SNAGTGTNLTTDPFTADTNTDESTKVLAQKLQSAGFTAGQTFN 122 K ++ S+AG G + + T AQK++S FT+ Sbjct: 70 GVKASIVDSTIASVSATSSAGIGAH----------QIEVQTLAQAQKIKSESFTSPSDII 119 Query: 123 AGDSVAIKVGTNQP--TF----------ITLQANAT-LAGVRDAINAAKAGVTASITTDG 169 ++ I+ GT TF IT++ + T LA +RD IN A GVTASI DG Sbjct: 120 GSGTLTIEFGTYNIDGTFTENLKKASASITIETDQTSLANIRDTINKASIGVTASIVNDG 179 Query: 170 SGDHLVLESNTGDTANTIRITANNS---------LSSLAYDPSSNVSSTVTQIQAPRDAS 220 +G+ LVL SN +N ++IT ++ LS LA+D S+ ++ +++ A RDA+ Sbjct: 180 NGNRLVLSSNDSGLSNALKITVSDDDLNNIDNNGLSKLAFDASTGGTANMSETVAARDAT 239 >ref|YP_584415.1| flagellar filament capping-like protein (fliD-like) [Cupriavidus metallidurans CH34] gb|ABF09146.1| flagellar filament capping-like protein (fliD-like) [Cupriavidus metallidurans CH34] Length = 498 Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 118/319 (36%), Positives = 179/319 (56%), Gaps = 35/319 (10%) Query: 374 LNDVMKAINDANTGVTASITNDGS--KDHLVLTP--TG-TDAVKLT-----GAGDYSDLA 423 L + AIN+AN GVTASI NDGS LV+ TG T++V+L+ G ++L Sbjct: 187 LQGIASAINNANAGVTASIINDGSGTPYRLVINSNNTGATNSVRLSVNETDGGTALANLV 246 Query: 424 G------STMGQLAKAQDAKLTVDGVTVTITSNKVTNVISGVTLNLSKVTTSADNFSLSI 477 G + Q AQ+++LTV+ + + TSN V++ ++GVT+ L++ TS S+S+ Sbjct: 247 GYDPAGTQNLQQTVAAQNSQLTVNNIAIQSTSNTVSDAVAGVTMTLAQTGTS----SVSV 302 Query: 478 NNDTSGLSTAANTFVTAYNTLAKAVANLTKQTPSTTKGQASTGSPLASESSVLALMGQVR 537 DTS + T FVTAYN L A+L+ PST T SPL +S++ + Q+R Sbjct: 303 QRDTSSIMTGIQGFVTAYNNLQSTSASLSAYDPST-----QTASPLTGDSTLSIMQSQMR 357 Query: 538 NTMLGALGDNGATNLSQIGISFQKDGTLALDATKLTNAANKDFDGITQLF--TSATNGVV 595 + + +N T LSQIGISFQ DGTLA+D +KLT A N + + LF T +G Sbjct: 358 SLLNTPQSNNALTTLSQIGISFQDDGTLAVDTSKLTTALNNNAGAVANLFGNTDGVSGYG 417 Query: 596 PKLQKLMDGILGESGVLASKTKGLQDSLKIVTDQ----QTAANARLQDLKDTYTNQFNRL 651 ++ L+ + +G L + T G+ ++LK +++Q QT NA + + Y QF +L Sbjct: 418 NQISTLVKNLTSSTGALTTATAGINNTLKDLSNQYDQTQTQINADIAN----YKAQFTQL 473 Query: 652 NVTLATMQSRQSYLTQQLA 670 +V ++ MQS +YLTQQ + Sbjct: 474 DVIMSQMQSTSAYLTQQFS 492 >ref|YP_747175.1| flagellar hook-associated 2 domain-containing protein [Nitrosomonas eutropha C91] gb|ABI59210.1| flagellar hook-associated 2 domain protein [Nitrosomonas eutropha C91] Length = 480 Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 119/346 (34%), Positives = 183/346 (52%), Gaps = 41/346 (11%) Query: 356 SKSFTINPTDLDGSGAIGLNDVMKAINDANTGVTASITNDGSKDHLVLTP--TG-TDAVK 412 +K+ TI+P L+D+ IN+ANTGVTASI NDG+ + LV+ TG T+A+K Sbjct: 145 AKTITIDP------AKSTLSDIRNTINEANTGVTASIVNDGNGNRLVIASRDTGLTNALK 198 Query: 413 LTG----------------AGDYSDLAGST-MGQLAKAQDAKLTVDGVTVTITSNKVTNV 455 +T A D S G T M + A++AK+ +DG+ V +SN + + Sbjct: 199 ITVDDADGNHTNNTGLSKLAFDASSTGGVTNMAEAVPAKNAKMKIDGIAVEKSSNTINDA 258 Query: 456 ISGVTLNLSKVTTSADNFSLSINNDTSGLSTAANTFVTAYNTLAKAVANLTKQTPSTTKG 515 + GVT NL K N +L++ D + + TA FVTAYN L K++ NL++ T Sbjct: 259 LEGVTFNLLKANPGT-NMTLTVEQDKASVETAVKAFVTAYNELEKSIGNLSRY--DTANK 315 Query: 516 QASTGSPLASESSVLALMGQVRNTMLG---ALGDNGATNLSQIGISFQKDGTLALDATKL 572 QAS L +S+V + +VR + G A+G G +LS++GISFQKDGTL LD KL Sbjct: 316 QASV---LTGDSTVRMVQNRVRAMLTGNQSAVG--GINSLSELGISFQKDGTLKLDNGKL 370 Query: 573 TNAANKDFDGITQLFTS----ATNGVVPKLQKLMDGILGESGVLASKTKGLQDSLKIVTD 628 + + F++ T G +L +L+DG+ G++ ++ G+ ++K + Sbjct: 371 SAVLVDPDKNVAAFFSTQTMEGTEGFATQLDQLLDGMARSDGLINNRMDGINSTIKGIGR 430 Query: 629 QQTAANARLQDLKDTYTNQFNRLNVTLATMQSRQSYLTQQLAKLSK 674 Q+ A RL +++ QF L+ +A+M +YL QQLA L K Sbjct: 431 QREALEHRLGEVEKRLRAQFTALDSMVASMTQTNNYLQQQLANLPK 476 Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 73/214 (34%), Positives = 110/214 (51%), Gaps = 25/214 (11%) Query: 15 LDVATLVNQLISVESKSRLTPLKNKESSFNTLISAYGSLKNAFTSYQSALKTLTA-ASFS 73 LD++ ++++L+ VE + LT L KE+ +SA+GSLK+A +S+Q ++K L A F+ Sbjct: 11 LDISGIISKLMQVEQRP-LTQLNTKEAKQQAQLSAFGSLKSALSSFQESVKALAKPALFT 69 Query: 74 AQKTTLSNAGTGTNLTTDPFTADTNTDESTKVL-AQKLQSAGFTAGQTFNAGDSVAIKVG 132 K TL++ T T+ A + E + AQK++S F T ++ I G Sbjct: 70 GFKATLTDTTVATVSTSAKVAAGVHEIEVQSLAQAQKIKSEAFVTTDTIIGNGTLTIAFG 129 Query: 133 T--NQPTF----------ITLQ-ANATLAGVRDAINAAKAGVTASITTDGSGDHLVLESN 179 T TF IT+ A +TL+ +R+ IN A GVTASI DG+G+ LV+ S Sbjct: 130 TYNEDDTFTANTEKAAKTITIDPAKSTLSDIRNTINEANTGVTASIVNDGNGNRLVIASR 189 Query: 180 TGDTANTIRITA---------NNSLSSLAYDPSS 204 N ++IT N LS LA+D SS Sbjct: 190 DTGLTNALKITVDDADGNHTNNTGLSKLAFDASS 223 >ref|YP_934209.1| flagellar hook-associated protein [Azoarcus sp. BH72] emb|CAL95322.1| flagellar hook-associated protein [Azoarcus sp. BH72] Length = 473 Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 142/437 (32%), Positives = 220/437 (50%), Gaps = 41/437 (9%) Query: 268 IQPKTNSLAGVRDAINASD--AGVNASIVNDG---TNDHLVLTAKDAGSANTLRVTGTGN 322 I+ SL A+N++D A A++ DG T+D AK A + ++ VT Sbjct: 48 IKSALTSLQTATTALNSTDKFAATKATVAGDGFTATSD-----AKAAAGSYSIDVTQMAK 102 Query: 323 FAAFNFDPSGTITTTGVATNQTYSSGSLALQVGSKSFTINPTD----LDGSGAIGLNDVM 378 + S T A T G++ G+KSF + LD G L + Sbjct: 103 IQRVSTATSSTFVP--AAGKMTIEYGTVKTTDGTKSFASDSPPRTATLDFEGGT-LEQLR 159 Query: 379 KAIN-DANTGVTASITNDGSKDHLVLTPTGTDA---VKLTGAGDYSDL---------AGS 425 AIN D G+ ASI N+G+ LVL+ T T A KLTG +DL AG Sbjct: 160 DAINKDTTLGLKASIVNNGTTSQLVLSGTKTGANMAFKLTGESGLADLSFDPSATAAAGD 219 Query: 426 TMGQLAKAQDAKLTVDGVTVTITSNKVTNVISGVTLNLSKV---TTSADNFSLSINNDTS 482 M + AQDA L VDG++VT +SN +++VI GVTL L+K T ++ + ++++ D S Sbjct: 220 KMYSVQAAQDALLKVDGISVTRSSNTISDVIDGVTLTLNKEPSGTATSLSGTVTVAADQS 279 Query: 483 GLSTAANTFVTAYNTLAKAVANLTKQTPSTTKGQASTGSPLASESSVLALMGQVRNTMLG 542 TA + FV AYN + + +LT T T + L +++ ++ GQ+R+ + Sbjct: 280 AAKTAVDAFVKAYNEVQSTLKSLTAYNTET-----DTAATLTGDATARSIQGQLRSALAQ 334 Query: 543 AL-GDNGATNLSQIGISFQKDGTLALDATKLTNAANKDFDGITQLF--TSATNGVVPKLQ 599 + G A++LSQIGI+F KDGTL++D+TK A + + LF T +G Sbjct: 335 SFSGLGNASSLSQIGITFAKDGTLSVDSTKFNKAMSDPAMNVGALFAGTDKIDGFADVFS 394 Query: 600 KLMDGILGESGVLASKTKGLQDSLKIVTDQQTAANARLQDLKDTYTNQFNRLNVTLATMQ 659 K + ++ GV+AS+T G+ ++K +T Q A RL+ ++ Y +QF+ L+ L+ M Sbjct: 395 KKLSSMIDSGGVIASRTDGINSTIKSITKQYDAMETRLEAMEARYRSQFSSLDTLLSGMS 454 Query: 660 SRQSYLTQQLAKLSKSS 676 +YL+QQLA L +S Sbjct: 455 QTSTYLSQQLANLPSTS 471 Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 25/232 (10%) Query: 8 ISTSAGPLDVATLVNQLISVESKSRLTPLKNKESSFNTLISAYGSLKNAFTSYQSALKTL 67 I++S LD+ +LV L+SVES+ L+ L KE+S+ +SA+G +K+A TS Q+A L Sbjct: 4 ITSSGSILDIDSLVKGLMSVESRP-LSLLATKEASYQAKLSAFGQIKSALTSLQTATTAL 62 Query: 68 TAA-SFSAQKTTLSNAGTGTNLTTDPFTADTNTDESTKVLAQKLQSAGFTAGQTF-NAGD 125 + F+A K T+ AG G T+D A + +A K+Q TF A Sbjct: 63 NSTDKFAATKATV--AGDGFTATSDAKAAAGSYSIDVTQMA-KIQRVSTATSSTFVPAAG 119 Query: 126 SVAIKVGT-------------NQPTFITLQ-ANATLAGVRDAINA-AKAGVTASITTDGS 170 + I+ GT + P TL TL +RDAIN G+ ASI +G+ Sbjct: 120 KMTIEYGTVKTTDGTKSFASDSPPRTATLDFEGGTLEQLRDAINKDTTLGLKASIVNNGT 179 Query: 171 GDHLVLESNTGDTANT-IRITANNSLSSLAYDPSSNVSS--TVTQIQAPRDA 219 LVL S T AN ++T + L+ L++DPS+ ++ + +QA +DA Sbjct: 180 TSQLVL-SGTKTGANMAFKLTGESGLADLSFDPSATAAAGDKMYSVQAAQDA 230