BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0414.p (224 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774557.1| dipeptide/oligopeptide/nickel ABC transporte... 438 e-121 ref|YP_004750982.1| ABC peptide transporter, inner membrane subu... 377 e-103 ref|YP_931724.1| ABC transporter permease [Azoarcus sp. BH72] >g... 294 8e-78 gb|AEG71951.1| dipeptide transmembrane protein [Ralstonia solana... 288 3e-76 ref|YP_003748310.1| peptide ABC transporter permease [Ralstonia ... 287 9e-76 ref|YP_002947494.1| binding-protein-dependent transport systems ... 286 1e-75 emb|CAQ36890.1| dipeptide transmembrane protein [Ralstonia solan... 286 1e-75 ref|ZP_00946697.1| DppC [Ralstonia solanacearum UW551] >gi|20773... 286 1e-75 ref|YP_004354842.1| ABC transporter permease [Pseudomonas brassi... 286 1e-75 ref|YP_004152944.1| binding-protein-dependent transport systems ... 286 2e-75 >ref|YP_003774557.1| dipeptide/oligopeptide/nickel ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ62649.1| ABC-type dipeptide/oligopeptide/nickel transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 293 Score = 438 bits (1126), Expect = e-121, Method: Compositional matrix adjust. Identities = 224/224 (100%), Positives = 224/224 (100%) Query: 1 MSHKFLLGSDYLGRDMLSRILFGTRATIGLALAATVLASATGTAIALFAAFSGGWRDAVI 60 MSHKFLLGSDYLGRDMLSRILFGTRATIGLALAATVLASATGTAIALFAAFSGGWRDAVI Sbjct: 70 MSHKFLLGSDYLGRDMLSRILFGTRATIGLALAATVLASATGTAIALFAAFSGGWRDAVI 129 Query: 61 SRALDALISIPSKMFALMMVATFGSSMLLLVLTAAITYMPGAYRIARSLAVNVQAMEYVQ 120 SRALDALISIPSKMFALMMVATFGSSMLLLVLTAAITYMPGAYRIARSLAVNVQAMEYVQ Sbjct: 130 SRALDALISIPSKMFALMMVATFGSSMLLLVLTAAITYMPGAYRIARSLAVNVQAMEYVQ 189 Query: 121 AARARGEGVWYIMTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSL 180 AARARGEGVWYIMTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSL Sbjct: 190 AARARGEGVWYIMTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSL 249 Query: 181 VRENISGLGEGALAVIMPALAIASLTIGVNLLIDNLRSKRAAKE 224 VRENISGLGEGALAVIMPALAIASLTIGVNLLIDNLRSKRAAKE Sbjct: 250 VRENISGLGEGALAVIMPALAIASLTIGVNLLIDNLRSKRAAKE 293 >ref|YP_004750982.1| ABC peptide transporter, inner membrane subunit [Collimonas fungivorans Ter331] gb|AEK60159.1| ABC peptide transporter, inner membrane subunit [Collimonas fungivorans Ter331] Length = 289 Score = 377 bits (967), Expect = e-103, Method: Compositional matrix adjust. Identities = 212/224 (94%), Positives = 219/224 (97%) Query: 1 MSHKFLLGSDYLGRDMLSRILFGTRATIGLALAATVLASATGTAIALFAAFSGGWRDAVI 60 MS KFLLGSDYLGRDMLSRILFGTRATIGLALAAT+LAS+ GTA+AL+AAF+GGWRDAVI Sbjct: 66 MSRKFLLGSDYLGRDMLSRILFGTRATIGLALAATLLASSIGTAVALYAAFTGGWRDAVI 125 Query: 61 SRALDALISIPSKMFALMMVATFGSSMLLLVLTAAITYMPGAYRIARSLAVNVQAMEYVQ 120 SRALDALISIPSKMFALMMVATFGSSM LLV TAAITYMPGAYRIARS+AVNVQAMEYVQ Sbjct: 126 SRALDALISIPSKMFALMMVATFGSSMWLLVTTAAITYMPGAYRIARSVAVNVQAMEYVQ 185 Query: 121 AARARGEGVWYIMTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSL 180 AARARGEGVWYIMT+EMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSL Sbjct: 186 AARARGEGVWYIMTMEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSL 245 Query: 181 VRENISGLGEGALAVIMPALAIASLTIGVNLLIDNLRSKRAAKE 224 VRENISGLGEGALAVIMPALAIASLTIGVNLLIDNLR KRAAKE Sbjct: 246 VRENISGLGEGALAVIMPALAIASLTIGVNLLIDNLRGKRAAKE 289 >ref|YP_931724.1| ABC transporter permease [Azoarcus sp. BH72] emb|CAL92837.1| ABC transporter, permease protein [Azoarcus sp. BH72] Length = 291 Score = 294 bits (752), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 153/224 (68%), Positives = 182/224 (81%), Gaps = 1/224 (0%) Query: 1 MSHKFLLGSDYLGRDMLSRILFGTRATIGLALAATVLASATGTAIALFAAFSGGWRDAVI 60 +S LG+DYLGRDML+R++ G T+G+A+ AT+LASA GTA+AL AA GGW D + Sbjct: 69 LSAAHPLGTDYLGRDMLARLVLGAGYTVGVAIVATLLASAGGTALALLAAVRGGWTDGAL 128 Query: 61 SRALDALISIPSKMFALMMVATFGSSMLLLVLTAAITYMPGAYRIARSLAVNVQAMEYVQ 120 SR +D LISIPSK+FAL+MVA FGSS+ LL LTAA+ Y+PG +RIARSLAVN+ AM+YV Sbjct: 129 SRLMDTLISIPSKLFALIMVAAFGSSVTLLALTAALIYVPGVFRIARSLAVNINAMDYVA 188 Query: 121 AARARGEGVWYIMTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSL 180 AR+RGEG YIM E+LPNM+ P+LAD GLRFVYVVLLL+GLSFL LGVQPP+ADWGSL Sbjct: 189 VARSRGEGDLYIMRHEILPNMLGPMLADLGLRFVYVVLLLAGLSFLGLGVQPPEADWGSL 248 Query: 181 VRENISGLGEGALAVIMPALAIASLTIGVNLLIDNLRSKRAAKE 224 VREN+ GL EGA AVI+PALAIASLTI VNL IDNL RA +E Sbjct: 249 VRENLGGLPEGAPAVIVPALAIASLTIAVNLFIDNL-PGRANRE 291 >gb|AEG71951.1| dipeptide transmembrane protein [Ralstonia solanacearum Po82] Length = 309 Score = 288 bits (738), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 152/224 (67%), Positives = 179/224 (79%), Gaps = 1/224 (0%) Query: 1 MSHKFLLGSDYLGRDMLSRILFGTRATIGLALAATVLASATGTAIALFAAFSGGWRDAVI 60 MS LG+DYLGRDM R++ G R T+G+AL AT+LAS TGT +ALFAA GG DAV+ Sbjct: 83 MSAAHWLGTDYLGRDMFVRLVDGARYTVGVALVATLLASGTGTVLALFAAAMGGLVDAVL 142 Query: 61 SRALDALISIPSKMFALMMVATFGSSMLLLVLTAAITYMPGAYRIARSLAVNVQAMEYVQ 120 SR LD L +IPSKMFAL+MVA FGSS+ +LVLTAAI Y+PGAYRIARSLAVN+ A++YV Sbjct: 143 SRVLDTLTAIPSKMFALIMVAGFGSSVTMLVLTAAIIYVPGAYRIARSLAVNINALDYVT 202 Query: 121 AARARGEGVWYIMTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSL 180 AR RGEG YIM E+LPN++ P+LAD GLRFVYVVLLL+ LSFL LG+QPP ADWGSL Sbjct: 203 VARTRGEGTLYIMLREILPNIVGPMLADLGLRFVYVVLLLASLSFLGLGIQPPSADWGSL 262 Query: 181 VRENISGLGEGALAVIMPALAIASLTIGVNLLIDNLRSKRAAKE 224 VRENI L + +VI+PALAIASLTI VNL+IDNL RAA+E Sbjct: 263 VRENIGALPDAGASVIVPALAIASLTIAVNLVIDNL-PGRAARE 305 >ref|YP_003748310.1| peptide ABC transporter permease [Ralstonia solanacearum CFBP2957] emb|CBJ53923.1| putative dipeptide transport system permease protein dppC [Ralstonia solanacearum CFBP2957] Length = 307 Score = 287 bits (734), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 151/224 (67%), Positives = 178/224 (79%), Gaps = 1/224 (0%) Query: 1 MSHKFLLGSDYLGRDMLSRILFGTRATIGLALAATVLASATGTAIALFAAFSGGWRDAVI 60 MS LG+DYLGRDM R++ G R T+G+AL AT+LAS TGT +ALFAA GG DA + Sbjct: 81 MSAAHWLGTDYLGRDMFVRLVDGARYTVGVALVATLLASGTGTVLALFAAAMGGLVDATL 140 Query: 61 SRALDALISIPSKMFALMMVATFGSSMLLLVLTAAITYMPGAYRIARSLAVNVQAMEYVQ 120 SR LD L +IPSKMFAL+MVA FGSS+ +LVLTAAI Y+PGAYRIARSLAVN+ A++YV Sbjct: 141 SRVLDTLTAIPSKMFALIMVAGFGSSVTMLVLTAAIIYVPGAYRIARSLAVNINALDYVT 200 Query: 121 AARARGEGVWYIMTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSL 180 AR RGEG YIM E+LPN++ P+LAD GLRFVYVVLLL+ LSFL LG+QPP ADWGSL Sbjct: 201 VARTRGEGTLYIMLREILPNIVGPMLADLGLRFVYVVLLLASLSFLGLGIQPPSADWGSL 260 Query: 181 VRENISGLGEGALAVIMPALAIASLTIGVNLLIDNLRSKRAAKE 224 VRENI L + +VI+PALAIASLTI VNL+IDNL RAA+E Sbjct: 261 VRENIGALPDAGASVIVPALAIASLTIAVNLVIDNL-PGRAARE 303 >ref|YP_002947494.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus S110] gb|ACS22228.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus S110] Length = 301 Score = 286 bits (733), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 153/224 (68%), Positives = 180/224 (80%), Gaps = 1/224 (0%) Query: 1 MSHKFLLGSDYLGRDMLSRILFGTRATIGLALAATVLASATGTAIALFAAFSGGWRDAVI 60 MS LG+DYLGRDML+ I+ G R TIG+AL AT+LAS TGT +AL AA SG W DAV+ Sbjct: 75 MSAAHWLGTDYLGRDMLALIIEGARYTIGVALLATLLASGTGTVLALLAAASGRWIDAVL 134 Query: 61 SRALDALISIPSKMFALMMVATFGSSMLLLVLTAAITYMPGAYRIARSLAVNVQAMEYVQ 120 SR LD L +IPSKMFAL+MVA FGSS+ +LV+TAAI Y+PGAYR+ARSLAVN+ A++YV Sbjct: 135 SRGLDTLTAIPSKMFALIMVAGFGSSVPMLVVTAAIIYVPGAYRMARSLAVNINALDYVT 194 Query: 121 AARARGEGVWYIMTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSL 180 AR RGEG YIM E+LPN++ P+LAD GLRFVYVVLLL+ LSFL LG+QPP ADWGSL Sbjct: 195 VARTRGEGTLYIMLREILPNILGPMLADLGLRFVYVVLLLASLSFLGLGIQPPAADWGSL 254 Query: 181 VRENISGLGEGALAVIMPALAIASLTIGVNLLIDNLRSKRAAKE 224 VRENI L G +VI+PALAIASLTI VNL+IDNL RAA+E Sbjct: 255 VRENIGALAMGGASVIVPALAIASLTIAVNLVIDNL-PGRAARE 297 >emb|CAQ36890.1| dipeptide transmembrane protein [Ralstonia solanacearum MolK2] Length = 332 Score = 286 bits (733), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 151/224 (67%), Positives = 178/224 (79%), Gaps = 1/224 (0%) Query: 1 MSHKFLLGSDYLGRDMLSRILFGTRATIGLALAATVLASATGTAIALFAAFSGGWRDAVI 60 MS LG+DYLGRDM R++ G R T+G+AL AT+LAS TGT +ALFAA GG DA + Sbjct: 81 MSAAHWLGTDYLGRDMFVRLVDGARYTVGVALVATLLASGTGTVLALFAAAMGGLVDAAL 140 Query: 61 SRALDALISIPSKMFALMMVATFGSSMLLLVLTAAITYMPGAYRIARSLAVNVQAMEYVQ 120 SR LD L +IPSKMFAL+MVA FGSS+ +LVLTAAI Y+PGAYRIARSLAVN+ A++YV Sbjct: 141 SRVLDTLTAIPSKMFALIMVAGFGSSVTMLVLTAAIIYVPGAYRIARSLAVNINALDYVT 200 Query: 121 AARARGEGVWYIMTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSL 180 AR RGEG YIM E+LPN++ P+LAD GLRFVYVVLLL+ LSFL LG+QPP ADWGSL Sbjct: 201 VARTRGEGTLYIMLREILPNIVGPMLADLGLRFVYVVLLLASLSFLGLGIQPPSADWGSL 260 Query: 181 VRENISGLGEGALAVIMPALAIASLTIGVNLLIDNLRSKRAAKE 224 VRENI L + +VI+PALAIASLTI VNL+IDNL RAA+E Sbjct: 261 VRENIGALPDAGASVIVPALAIASLTIAVNLVIDNL-PGRAARE 303 >ref|ZP_00946697.1| DppC [Ralstonia solanacearum UW551] ref|YP_002257769.1| transmembrane protein [Ralstonia solanacearum IPO1609] gb|EAP70806.1| DppC [Ralstonia solanacearum UW551] emb|CAQ59656.1| transmembrane protein [Ralstonia solanacearum IPO1609] Length = 307 Score = 286 bits (733), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 151/224 (67%), Positives = 178/224 (79%), Gaps = 1/224 (0%) Query: 1 MSHKFLLGSDYLGRDMLSRILFGTRATIGLALAATVLASATGTAIALFAAFSGGWRDAVI 60 MS LG+DYLGRDM R++ G R T+G+AL AT+LAS TGT +ALFAA GG DA + Sbjct: 81 MSAAHWLGTDYLGRDMFVRLVDGARYTVGVALVATLLASGTGTVLALFAAAMGGLVDAAL 140 Query: 61 SRALDALISIPSKMFALMMVATFGSSMLLLVLTAAITYMPGAYRIARSLAVNVQAMEYVQ 120 SR LD L +IPSKMFAL+MVA FGSS+ +LVLTAAI Y+PGAYRIARSLAVN+ A++YV Sbjct: 141 SRVLDTLTAIPSKMFALIMVAGFGSSVTMLVLTAAIIYVPGAYRIARSLAVNINALDYVT 200 Query: 121 AARARGEGVWYIMTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSL 180 AR RGEG YIM E+LPN++ P+LAD GLRFVYVVLLL+ LSFL LG+QPP ADWGSL Sbjct: 201 VARTRGEGTLYIMLREILPNIVGPMLADLGLRFVYVVLLLASLSFLGLGIQPPSADWGSL 260 Query: 181 VRENISGLGEGALAVIMPALAIASLTIGVNLLIDNLRSKRAAKE 224 VRENI L + +VI+PALAIASLTI VNL+IDNL RAA+E Sbjct: 261 VRENIGALPDAGASVIVPALAIASLTIAVNLVIDNL-PGRAARE 303 >ref|YP_004354842.1| ABC transporter permease [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA69838.1| putative ABC transporter, permease component [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 286 Score = 286 bits (733), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 144/220 (65%), Positives = 175/220 (79%) Query: 1 MSHKFLLGSDYLGRDMLSRILFGTRATIGLALAATVLASATGTAIALFAAFSGGWRDAVI 60 +S + LG+DYLGRDMLSRIL G + T+GLAL A VLAS GT+ AL + S W D +I Sbjct: 60 LSAAYPLGTDYLGRDMLSRILVGAQFTVGLALVAAVLASGLGTSCALLSVVSPKWLDELI 119 Query: 61 SRALDALISIPSKMFALMMVATFGSSMLLLVLTAAITYMPGAYRIARSLAVNVQAMEYVQ 120 SR +DA ISIPSKM AL+MV+ FGSS+ LLV TA +++MPGA+RIARS+AVN++A+EYVQ Sbjct: 120 SRLMDAFISIPSKMLALIMVSAFGSSVTLLVCTAVLSFMPGAFRIARSMAVNIEALEYVQ 179 Query: 121 AARARGEGVWYIMTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSL 180 AR RGE YI VE+LPNM+ PVL D GLRF ++VLLLSG+SFL LGVQPPDAD GSL Sbjct: 180 VARTRGERRLYIACVEILPNMLNPVLTDLGLRFGFIVLLLSGMSFLGLGVQPPDADLGSL 239 Query: 181 VRENISGLGEGALAVIMPALAIASLTIGVNLLIDNLRSKR 220 VRENI GL +GA A+++PALAI +LTIGVNL ID L S+R Sbjct: 240 VRENIGGLNQGAPAIVIPALAIGTLTIGVNLFIDRLSSRR 279 >ref|YP_004152944.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus EPS] gb|ADU34833.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus EPS] Length = 301 Score = 286 bits (731), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 151/224 (67%), Positives = 180/224 (80%), Gaps = 1/224 (0%) Query: 1 MSHKFLLGSDYLGRDMLSRILFGTRATIGLALAATVLASATGTAIALFAAFSGGWRDAVI 60 +S LG+DYLGRDML+ I+ G R TIG+AL AT+LAS TGT +AL AA SG W D+V+ Sbjct: 75 ISAAHWLGTDYLGRDMLALIIEGARYTIGVALLATLLASGTGTTLALLAAASGRWTDSVL 134 Query: 61 SRALDALISIPSKMFALMMVATFGSSMLLLVLTAAITYMPGAYRIARSLAVNVQAMEYVQ 120 SR LD L +IPSKMFAL+MVA FGSS+ +LV+TAAI Y+PGAYR+ARSLAVN+ A++YV Sbjct: 135 SRGLDTLTAIPSKMFALIMVAGFGSSVAMLVVTAAIIYVPGAYRMARSLAVNINALDYVT 194 Query: 121 AARARGEGVWYIMTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSL 180 AR RGEG YIM E+LPN++ P+LAD GLRFVYVVLLL+ LSFL LG+QPP ADWGSL Sbjct: 195 VARTRGEGTLYIMLREILPNILGPMLADLGLRFVYVVLLLASLSFLGLGIQPPAADWGSL 254 Query: 181 VRENISGLGEGALAVIMPALAIASLTIGVNLLIDNLRSKRAAKE 224 VRENI L G +VI+PALAIASLTI VNL+IDNL RAA+E Sbjct: 255 VRENIGALAMGGASVIVPALAIASLTIAVNLVIDNL-PGRAARE 297