BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0408.p (138 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774562.1| translation initiation inhibitor protein [He... 275 2e-72 ref|ZP_04948754.1| hypothetical protein BDAG_04777 [Burkholderia... 187 5e-46 ref|ZP_06842873.1| Endoribonuclease L-PSP [Burkholderia sp. Ch1-... 183 8e-45 ref|YP_560097.1| hypothetical protein Bxe_A0900 [Burkholderia xe... 179 1e-43 ref|YP_001896710.1| endoribonuclease L-PSP [Burkholderia phytofi... 176 1e-42 ref|ZP_03267954.1| Endoribonuclease L-PSP [Burkholderia sp. H160... 174 4e-42 ref|YP_001889615.1| endoribonuclease L-PSP [Burkholderia phytofi... 174 4e-42 ref|YP_002948024.1| Endoribonuclease L-PSP [Variovorax paradoxus... 159 1e-37 ref|YP_003605873.1| Endoribonuclease L-PSP [Burkholderia sp. CCG... 158 3e-37 ref|YP_004617319.1| hypothetical protein Rta_02360 [Ramlibacter ... 155 2e-36 >ref|YP_003774562.1| translation initiation inhibitor protein [Herbaspirillum seropedicae SmR1] gb|ADJ62654.1| translation initiation inhibitor, yjgF family protein [Herbaspirillum seropedicae SmR1] Length = 138 Score = 275 bits (702), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 137/138 (99%), Positives = 137/138 (99%) Query: 1 MNHDPHHADPAATYPVTHNPAGLATPGGHYSHVATGNGMAFISGQLPIDAHGNKLAEASF 60 MNHD HHADPAATYPVTHNPAGLATPGGHYSHVATGNGMAFISGQLPIDAHGNKLAEASF Sbjct: 1 MNHDQHHADPAATYPVTHNPAGLATPGGHYSHVATGNGMAFISGQLPIDAHGNKLAEASF 60 Query: 61 DVQARQVLANVEAALAGVGSEIGKLLQVRVYLTDVAHWPAFNDLYAAWAGSARPARAVVP 120 DVQARQVLANVEAALAGVGSEIGKLLQVRVYLTDVAHWPAFNDLYAAWAGSARPARAVVP Sbjct: 61 DVQARQVLANVEAALAGVGSEIGKLLQVRVYLTDVAHWPAFNDLYAAWAGSARPARAVVP 120 Query: 121 VPALHFGLQIEVEATALL 138 VPALHFGLQIEVEATALL Sbjct: 121 VPALHFGLQIEVEATALL 138 >ref|ZP_04948754.1| hypothetical protein BDAG_04777 [Burkholderia dolosa AUO158] gb|EAY71925.1| hypothetical protein BDAG_04777 [Burkholderia dolosa AUO158] Length = 166 Score = 187 bits (475), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 89/126 (70%), Positives = 104/126 (82%) Query: 12 ATYPVTHNPAGLATPGGHYSHVATGNGMAFISGQLPIDAHGNKLAEASFDVQARQVLANV 71 A +P T NPAGLATPGGHYSHV+ NG+ F+SGQLPIDA G KL++ FD QA QVLANV Sbjct: 40 AAHPRTLNPAGLATPGGHYSHVSIANGLIFVSGQLPIDATGRKLSDRPFDEQAEQVLANV 99 Query: 72 EAALAGVGSEIGKLLQVRVYLTDVAHWPAFNDLYAAWAGSARPARAVVPVPALHFGLQIE 131 ALAG GS++ KL+QVR Y+ DVAHWP+FN++YA WA A+PARAVVPVPALHFGL+IE Sbjct: 100 ACALAGAGSDVTKLVQVRAYIVDVAHWPSFNEIYARWAADAKPARAVVPVPALHFGLKIE 159 Query: 132 VEATAL 137 VEA AL Sbjct: 160 VEAVAL 165 >ref|ZP_06842873.1| Endoribonuclease L-PSP [Burkholderia sp. Ch1-1] gb|EFG69597.1| Endoribonuclease L-PSP [Burkholderia sp. Ch1-1] Length = 137 Score = 183 bits (464), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 88/137 (64%), Positives = 103/137 (75%), Gaps = 7/137 (5%) Query: 2 NHDPHHADPAATYPVTHNPAGLATPGGHYSHVATGNGMAFISGQLPIDAHGNKLAEASFD 61 HD H P T NPA L+ PGGHYSHVA NG F+SGQLPI G+KL+EASF+ Sbjct: 5 QHDSH-------LPRTENPATLSKPGGHYSHVAVANGFVFVSGQLPITPQGDKLSEASFE 57 Query: 62 VQARQVLANVEAALAGVGSEIGKLLQVRVYLTDVAHWPAFNDLYAAWAGSARPARAVVPV 121 VQA QVLANV+AAL G GS + +L+QVRVY+ DV HW +FN +YA WAG ARPARAVVPV Sbjct: 58 VQAEQVLANVQAALEGAGSSVAQLVQVRVYIVDVEHWMSFNQIYARWAGEARPARAVVPV 117 Query: 122 PALHFGLQIEVEATALL 138 P LH+G +IEVEATAL+ Sbjct: 118 PQLHYGFRIEVEATALV 134 >ref|YP_560097.1| hypothetical protein Bxe_A0900 [Burkholderia xenovorans LB400] gb|ABE32045.1| Conserved hypothetical protein [Burkholderia xenovorans LB400] Length = 134 Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 84/124 (67%), Positives = 98/124 (79%) Query: 15 PVTHNPAGLATPGGHYSHVATGNGMAFISGQLPIDAHGNKLAEASFDVQARQVLANVEAA 74 P T NPA L+ PGGHYSHVA NG F+SGQLPI G KL+EASF+VQA QVLANV+AA Sbjct: 11 PRTENPATLSKPGGHYSHVAIANGFVFVSGQLPITPQGGKLSEASFEVQAEQVLANVQAA 70 Query: 75 LAGVGSEIGKLLQVRVYLTDVAHWPAFNDLYAAWAGSARPARAVVPVPALHFGLQIEVEA 134 L GS + +L+QVRVY+ DV HW +FN +YA WAG ARPARAVVPVP LH+G +IEVEA Sbjct: 71 LESAGSSVAQLVQVRVYIVDVEHWMSFNQIYARWAGEARPARAVVPVPQLHYGFRIEVEA 130 Query: 135 TALL 138 TAL+ Sbjct: 131 TALV 134 >ref|YP_001896710.1| endoribonuclease L-PSP [Burkholderia phytofirmans PsJN] gb|ACD17486.1| Endoribonuclease L-PSP [Burkholderia phytofirmans PsJN] Length = 134 Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 83/124 (66%), Positives = 99/124 (79%) Query: 15 PVTHNPAGLATPGGHYSHVATGNGMAFISGQLPIDAHGNKLAEASFDVQARQVLANVEAA 74 P NPA L+ PGGHY+HVA NG F+SGQLPI A G+KL+EASF+VQA QVLANV+AA Sbjct: 11 PHMDNPATLSQPGGHYTHVAVANGFVFVSGQLPITAQGDKLSEASFEVQAEQVLANVQAA 70 Query: 75 LAGVGSEIGKLLQVRVYLTDVAHWPAFNDLYAAWAGSARPARAVVPVPALHFGLQIEVEA 134 L GS + +L+QVRVY+ DV HW +FN +YA WAG ARPARAVVPVP LH+G +IEVEA Sbjct: 71 LERAGSGVAQLVQVRVYIVDVEHWMSFNQIYARWAGEARPARAVVPVPQLHYGFKIEVEA 130 Query: 135 TALL 138 TAL+ Sbjct: 131 TALV 134 >ref|ZP_03267954.1| Endoribonuclease L-PSP [Burkholderia sp. H160] gb|EEA00500.1| Endoribonuclease L-PSP [Burkholderia sp. H160] Length = 130 Score = 174 bits (441), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 80/124 (64%), Positives = 96/124 (77%) Query: 15 PVTHNPAGLATPGGHYSHVATGNGMAFISGQLPIDAHGNKLAEASFDVQARQVLANVEAA 74 P T NP LA PGGHYSHVA NG F+SGQLPI+A G KLA+A FD QA QVL+NV AA Sbjct: 7 PYTDNPTALAKPGGHYSHVAVANGFVFVSGQLPINAQGEKLADAPFDAQAEQVLSNVRAA 66 Query: 75 LAGVGSEIGKLLQVRVYLTDVAHWPAFNDLYAAWAGSARPARAVVPVPALHFGLQIEVEA 134 L VGS + +L+QVRVY+ D+ HW +FN +YA WAG A+PARAVVPVP LH+G +IEVEA Sbjct: 67 LESVGSSVAQLVQVRVYVADIEHWASFNQIYARWAGDAKPARAVVPVPQLHYGFKIEVEA 126 Query: 135 TALL 138 A++ Sbjct: 127 VAVV 130 >ref|YP_001889615.1| endoribonuclease L-PSP [Burkholderia phytofirmans PsJN] gb|ACD20244.1| Endoribonuclease L-PSP [Burkholderia phytofirmans PsJN] Length = 134 Score = 174 bits (441), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 80/124 (64%), Positives = 97/124 (78%) Query: 15 PVTHNPAGLATPGGHYSHVATGNGMAFISGQLPIDAHGNKLAEASFDVQARQVLANVEAA 74 P T NP GLA PGGHYSHV+ NGM F+SGQLPID G KL + F+ QA QVLAN+ A Sbjct: 11 PRTINPEGLAPPGGHYSHVSIANGMVFVSGQLPIDPTGRKLTDQPFEAQAEQVLANLATA 70 Query: 75 LAGVGSEIGKLLQVRVYLTDVAHWPAFNDLYAAWAGSARPARAVVPVPALHFGLQIEVEA 134 LAG GS++ KL+QVRVY+ D+ +W FN++YA W G+A+PARAVVPVPALHFGL+IEVEA Sbjct: 71 LAGAGSDVTKLVQVRVYIVDIEYWATFNEIYARWTGAAKPARAVVPVPALHFGLKIEVEA 130 Query: 135 TALL 138 A + Sbjct: 131 VACV 134 >ref|YP_002948024.1| Endoribonuclease L-PSP [Variovorax paradoxus S110] gb|ACS22758.1| Endoribonuclease L-PSP [Variovorax paradoxus S110] Length = 138 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 78/115 (67%), Positives = 91/115 (79%) Query: 23 LATPGGHYSHVATGNGMAFISGQLPIDAHGNKLAEASFDVQARQVLANVEAALAGVGSEI 82 LA PGGHYSH A G G+ FI+GQLPI G +LA+A+F+VQA Q LANVEAAL GS I Sbjct: 23 LARPGGHYSHAAVGGGLVFIAGQLPITPAGERLADAAFEVQAAQTLANVEAALLAAGSGI 82 Query: 83 GKLLQVRVYLTDVAHWPAFNDLYAAWAGSARPARAVVPVPALHFGLQIEVEATAL 137 GKLLQVRVYL D+A+WPAF+ +YA WAG +RPARAVVP LHFG ++EVEA AL Sbjct: 83 GKLLQVRVYLDDIANWPAFDRIYAQWAGPSRPARAVVPTGPLHFGFKVEVEAMAL 137 >ref|YP_003605873.1| Endoribonuclease L-PSP [Burkholderia sp. CCGE1002] gb|ADG16362.1| Endoribonuclease L-PSP [Burkholderia sp. CCGE1002] Length = 134 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 83/124 (66%), Positives = 99/124 (79%) Query: 15 PVTHNPAGLATPGGHYSHVATGNGMAFISGQLPIDAHGNKLAEASFDVQARQVLANVEAA 74 P T NPA LA PGGHYSHVA NG F+SGQLPI+A G+KLA+ASFD QA QVLANV+AA Sbjct: 11 PHTDNPAALAKPGGHYSHVAVANGFVFVSGQLPINAQGDKLADASFDAQAEQVLANVKAA 70 Query: 75 LAGVGSEIGKLLQVRVYLTDVAHWPAFNDLYAAWAGSARPARAVVPVPALHFGLQIEVEA 134 L VGS + +L+QVRVY+ DV HW +FN +YA WAG A+PARAVVPVP LH+G +IEVEA Sbjct: 71 LESVGSSVAQLVQVRVYVVDVEHWASFNQIYARWAGEAKPARAVVPVPQLHYGFKIEVEA 130 Query: 135 TALL 138 ++ Sbjct: 131 VGVV 134 >ref|YP_004617319.1| hypothetical protein Rta_02360 [Ramlibacter tataouinensis TTB310] gb|AEG91300.1| Conserved hypothetical protein [Ramlibacter tataouinensis TTB310] Length = 130 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 74/118 (62%), Positives = 88/118 (74%) Query: 20 PAGLATPGGHYSHVATGNGMAFISGQLPIDAHGNKLAEASFDVQARQVLANVEAALAGVG 79 PA LA P GHYSH G+ F++G+LP+ G L +ASF+ QARQVLANVEAAL G Sbjct: 12 PADLAAPRGHYSHAVRAAGLVFVAGELPVAPDGRLLTDASFEEQARQVLANVEAALRSAG 71 Query: 80 SEIGKLLQVRVYLTDVAHWPAFNDLYAAWAGSARPARAVVPVPALHFGLQIEVEATAL 137 S + KL+QVRVY+TD+ WPAFN LYA W G ARPAR VVPVP LH+G Q+E+EATAL Sbjct: 72 SSVHKLVQVRVYVTDIDQWPAFNALYAQWCGPARPARIVVPVPRLHYGFQLEMEATAL 129