BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0356.p (224 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774609.1| DNA repair RadC-like protein [Herbaspirillum... 455 e-126 ref|YP_001100717.1| DNA repair protein RadC [Herminiimonas arsen... 276 2e-72 ref|YP_001354241.1| DNA repair protein RadC [Janthinobacterium s... 263 1e-68 gb|ABW82962.1| DNA repair protein [uncultured bacterium pEAF66] 256 1e-66 ref|YP_004751889.1| DNA repair protein RadC [Collimonas fungivor... 253 2e-65 ref|YP_003523378.1| DNA repair protein RadC [Sideroxydans lithot... 253 2e-65 ref|YP_003751686.1| DNA repair protein radC homolog, associated ... 251 4e-65 ref|YP_544427.1| DNA repair protein RadC [Methylobacillus flagel... 251 6e-65 emb|CCA84774.1| DNA repair protein radC homolog, associated with... 251 6e-65 ref|NP_520565.1| DNA repair protein RadC [Ralstonia solanacearum... 251 7e-65 >ref|YP_003774609.1| DNA repair RadC-like protein [Herbaspirillum seropedicae SmR1] gb|ADJ62701.1| DNA repair RadC-like protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 223/224 (99%), Positives = 223/224 (99%) Query: 1 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV Sbjct: 1 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60 Query: 61 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHR 120 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMR RELLNSTRAVGDYLKLMLAHR Sbjct: 61 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRQRELLNSTRAVGDYLKLMLAHR 120 Query: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP Sbjct: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180 Query: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHGKM 224 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHGKM Sbjct: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHGKM 224 >ref|YP_001100717.1| DNA repair protein RadC [Herminiimonas arsenicoxydans] sp|A4G7V9.1|Y2468_HERAR RecName: Full=UPF0758 protein HEAR2468 emb|CAL62596.1| DNA repair protein RadC homolog [Herminiimonas arsenicoxydans] Length = 224 Score = 276 bits (705), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 131/224 (58%), Positives = 173/224 (77%) Query: 1 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60 M ITDWP+EQRPRER+ +HG A LSDAELLA+FLRVG+ GK+AV+L + + FGSL+G+ Sbjct: 1 MAITDWPEEQRPRERLIRHGAAILSDAELLAVFLRVGVTGKSAVDLGRDMVAHFGSLNGL 60 Query: 61 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHR 120 A D GLGPA QL+AVLE++RR++ +++ LNS +AV YL+L+L+ R Sbjct: 61 FSATLNDFSKINGLGPAKYAQLQAVLELARRSLCEELQAGVALNSPQAVKQYLQLLLSGR 120 Query: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180 E FV LFLDV+N+LI +E+F+GTLT ++VYPRE++KAAL HNAASVILAHNHPSG P Sbjct: 121 AYESFVILFLDVKNRLIVCDEMFRGTLTHTSVYPREIVKAALGHNAASVILAHNHPSGTP 180 Query: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHGKM 224 EPS D LT AL +AL ++D+R+LDHFVVAG ++YSFA+ G++ Sbjct: 181 EPSAADQTLTQALKQALMLIDVRVLDHFVVAGKQVYSFAEQGQL 224 >ref|YP_001354241.1| DNA repair protein RadC [Janthinobacterium sp. Marseille] sp|A6T144.1|Y2551_JANMA RecName: Full=UPF0758 protein mma_2551 gb|ABR88373.1| DNA repair protein [Janthinobacterium sp. Marseille] Length = 224 Score = 263 bits (672), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 125/224 (55%), Positives = 166/224 (74%) Query: 1 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60 M I+DWP++ RPRER+ +HG A L+DAELLAIFLR+G+ GK+AV+LA + + FGSL + Sbjct: 1 MAISDWPEQDRPRERLIKHGAAILTDAELLAIFLRLGVAGKSAVDLARDMLNHFGSLHAL 60 Query: 61 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHR 120 A D GLGPA QL+AVLE++RR++ ++++ LNS +AV YL+L+L + Sbjct: 61 FSASLDDFSQLNGLGPAKYAQLQAVLELTRRSLSEELQIGISLNSPQAVKKYLQLLLGGK 120 Query: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180 E F LFLDV+N+LI EELF+GTLT ++VYPRE++K AL HNAASVILAHNHPSG Sbjct: 121 PYEAFAVLFLDVKNRLIACEELFRGTLTHTSVYPREIVKEALTHNAASVILAHNHPSGSS 180 Query: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHGKM 224 EPS D LT AL +AL ++D+R+LDHFVV G +YSFA+HG + Sbjct: 181 EPSAADHSLTQALKQALALIDVRVLDHFVVGGKNVYSFAEHGHL 224 >gb|ABW82962.1| DNA repair protein [uncultured bacterium pEAF66] Length = 224 Score = 256 bits (655), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 122/224 (54%), Positives = 169/224 (75%) Query: 1 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60 M I DWP +QRPRER+ G +ALSD ELLA+FLRVGI G++AVEL + I++FGS+ G+ Sbjct: 1 MGIKDWPVQQRPRERLISEGASALSDPELLALFLRVGIKGRSAVELGRDLIEQFGSIQGL 60 Query: 61 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHR 120 A +G+GPA +L+AV+E+++RAI QM+ E L S V YL++ L + Sbjct: 61 FAASLAQFSAVRGMGPAKFAELQAVMELAQRAICEQMQAGEALGSPELVRQYLRMTLGRQ 120 Query: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180 + E FV LFLDV+N+L+ ++E+F+GTLT ++VYPREV+KAAL NAASV+LAHNHPSG P Sbjct: 121 QHESFVVLFLDVKNRLLSSQEMFRGTLTHTSVYPREVVKAALARNAASVLLAHNHPSGAP 180 Query: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHGKM 224 EPS+ DL LT +L +AL ++D+R+LDHFVVAG ++SFA+HG++ Sbjct: 181 EPSEADLILTRSLVQALALVDVRVLDHFVVAGPHVHSFAEHGQL 224 >ref|YP_004751889.1| DNA repair protein RadC [Collimonas fungivorans Ter331] gb|AEK61066.1| DNA repair protein RadC [Collimonas fungivorans Ter331] Length = 224 Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 121/224 (54%), Positives = 166/224 (74%) Query: 1 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60 M ITDWP +QRPRER+ + GP ALS+AELLA+FLRVG GK+AV+L E FGSL+ + Sbjct: 1 MAITDWPADQRPRERLIKLGPQALSNAELLAVFLRVGAAGKSAVDLGREMTSHFGSLNRL 60 Query: 61 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHR 120 A ++ GLGPA QL+A+LE+ RR++ +++ ++ AV YL+L+L ++ Sbjct: 61 FSAPLKEFCAIHGLGPAKFAQLQAILELGRRSLAEELQAGSSFDAPAAVKQYLQLLLTNK 120 Query: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180 E F+ LFLDV+N+LI EELF+GTLT ++VYPREV+KAAL HNAASV+LAHNHPSG Sbjct: 121 PHESFLVLFLDVKNRLICAEELFRGTLTHASVYPREVVKAALTHNAASVMLAHNHPSGTL 180 Query: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHGKM 224 EPS D +LT L +AL ++ +R+LDHF+VAGT ++SFA+HG++ Sbjct: 181 EPSSADRQLTQTLKQALDLIGVRVLDHFIVAGTEVHSFAEHGQL 224 >ref|YP_003523378.1| DNA repair protein RadC [Sideroxydans lithotrophicus ES-1] gb|ADE10991.1| DNA repair protein RadC [Sideroxydans lithotrophicus ES-1] Length = 224 Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 125/224 (55%), Positives = 169/224 (75%) Query: 1 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60 M ITDW + +RPRE++ Q G AALSDAELLAIFLR G+ G +AV+LA + + RFGSL + Sbjct: 1 MAITDWAEGERPREKLLQRGAAALSDAELLAIFLRTGVVGMSAVDLARDLLVRFGSLTRM 60 Query: 61 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHR 120 A E+D G+G A QL+AV+EMSRRA+ +M+ ++LNS RAV +YL+L+L R Sbjct: 61 FAASEKDFCDIHGMGRAKFVQLQAVVEMSRRALREEMQSGDVLNSPRAVREYLQLLLRSR 120 Query: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180 +QE FVA+F+D ++++I EELF+GTLTQ++VYPREV+K AL HNAA++I AHNHPSG Sbjct: 121 QQEVFVAIFVDAQHRVICAEELFQGTLTQTSVYPREVVKRALHHNAAALIFAHNHPSGVA 180 Query: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHGKM 224 EPS D LT AL +AL+++D+R+LDHF+VAG SFA+ G + Sbjct: 181 EPSQSDQLLTDALMQALRLVDVRVLDHFIVAGAACLSFAEKGML 224 >ref|YP_003751686.1| DNA repair protein radC homolog, associated with replication fork [Ralstonia solanacearum PSI07] emb|CBJ50389.1| DNA repair protein radC homolog, associated with replication fork [Ralstonia solanacearum PSI07] emb|CCA82654.1| DNA repair protein radC homolog, associated with replication fork [blood disease bacterium R229] Length = 224 Score = 251 bits (642), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 123/224 (54%), Positives = 164/224 (73%) Query: 1 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60 M I DWP +RPRE++ G AALSDAELLAIFLRVG+PGK+AV+LA E + FGSL + Sbjct: 1 MAIADWPAHERPREKLLTQGSAALSDAELLAIFLRVGMPGKSAVDLARELLAHFGSLGCL 60 Query: 61 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHR 120 A +R+ G+GPA QL A+LE++RRA+ ++ + L S ++V D+L+L L HR Sbjct: 61 CHASQREFSAIHGMGPAKYAQLHALLEVARRALKEEITHGQPLESPQSVKDFLRLTLGHR 120 Query: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180 QE F LFLDVR++LI EELF+GTLT++ VYPRE+ K AL HNA++VIL+HNHP+G Sbjct: 121 PQEVFACLFLDVRHRLIAWEELFQGTLTEARVYPREIAKRALYHNASAVILSHNHPTGHV 180 Query: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHGKM 224 EPS+ DL LT L AL ++D+R+LDH +V T++YSF +HGKM Sbjct: 181 EPSESDLMLTRELCRALALLDVRILDHMIVGRTQVYSFLEHGKM 224 >ref|YP_544427.1| DNA repair protein RadC [Methylobacillus flagellatus KT] sp|Q1H4K1.1|Y315_METFK RecName: Full=UPF0758 protein Mfla_0315 gb|ABE48586.1| DNA replication and repair protein RadC [Methylobacillus flagellatus KT] Length = 224 Score = 251 bits (641), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 121/222 (54%), Positives = 163/222 (73%) Query: 1 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60 M ITDWP+ +RPRE++ G ALSDAELLAIFLR G+ GK+AV+LA E ++RF SL+G+ Sbjct: 1 MAITDWPEGERPREKLRAAGAMALSDAELLAIFLRTGVAGKSAVDLARELLKRFSSLNGI 60 Query: 61 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHR 120 A ++ G+G + QL+A+ EMSRRA+ QM+ R++L S +AV YL L + Sbjct: 61 FAASAEEICQVHGMGLSKFVQLQAIFEMSRRALLEQMQGRDVLTSPQAVRQYLSLRIGAL 120 Query: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180 +E F+ +FLD +++++ EELF GTLTQ++VYPREV+K ALRHNAA++I AHNHPSG P Sbjct: 121 PREVFIGIFLDAQHRVLAVEELFSGTLTQTSVYPREVVKCALRHNAAAMIFAHNHPSGVP 180 Query: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHG 222 EPS D LT AL AL ++DIR+LDHFVVAG +L SF++ G Sbjct: 181 EPSQADRALTEALKAALNLIDIRVLDHFVVAGNQLVSFSERG 222 >emb|CCA84774.1| DNA repair protein radC homolog, associated with replication fork [Ralstonia syzygii R24] Length = 224 Score = 251 bits (641), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 123/224 (54%), Positives = 163/224 (72%) Query: 1 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60 M I DWP +RPRE++ G AALSDAELLAIFLRVG+PGK+AV+LA E + FGSL + Sbjct: 1 MAIADWPAHERPREKLLTQGSAALSDAELLAIFLRVGMPGKSAVDLARELLAHFGSLGCL 60 Query: 61 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHR 120 A +R+ G+GPA QL A+LE+ RRA+ ++ + L S ++V D+L+L L HR Sbjct: 61 CHASQREFSAIHGMGPAKYAQLHALLEVGRRALKEEITHGQPLESPQSVKDFLRLTLGHR 120 Query: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180 QE F LFLDVR++LI EELF+GTLT++ VYPRE+ K AL HNA++VIL+HNHP+G Sbjct: 121 PQEVFACLFLDVRHRLIAWEELFQGTLTEARVYPREIAKRALYHNASAVILSHNHPTGHV 180 Query: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHGKM 224 EPS+ DL LT L AL ++D+R+LDH +V T++YSF +HGKM Sbjct: 181 EPSESDLMLTRELCRALALLDVRILDHMIVGRTQVYSFLEHGKM 224 >ref|NP_520565.1| DNA repair protein RadC [Ralstonia solanacearum GMI1000] sp|Q8XWN0.1|Y2444_RALSO RecName: Full=UPF0758 protein RSc2444 emb|CAD16151.1| probable dna repair protein radc homolog [Ralstonia solanacearum GMI1000] Length = 224 Score = 251 bits (640), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 122/224 (54%), Positives = 162/224 (72%) Query: 1 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60 M I DWP +RPRE++ GPAALSDAELLAIFLRVG+PGK+AV+LA E + FGSL + Sbjct: 1 MAIADWPAHERPREKLLTQGPAALSDAELLAIFLRVGMPGKSAVDLARELLAHFGSLGRL 60 Query: 61 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHR 120 A R+ G+GPA QL A+LE++RRA+ ++ + L S ++V D+L+L L HR Sbjct: 61 CHASRREFSAIHGMGPAKYAQLHALLEVARRALKEEIAYGQTLESPQSVKDFLRLTLGHR 120 Query: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180 QE F LFLDVR++LI EELF+GTLT++ VYPRE+ K AL HNA+++IL+HNHP+G Sbjct: 121 PQEVFACLFLDVRHRLIAWEELFQGTLTEARVYPREIAKRALHHNASALILSHNHPTGHV 180 Query: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHGKM 224 EPS+ DL LT L AL ++D+R+LDH +V +YSF +HGKM Sbjct: 181 EPSESDLVLTRELCRALALLDVRVLDHMIVGRAEVYSFLEHGKM 224