BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0352.p (218 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773548.1| 50S ribosomal protein L3 [Herbaspirillum ser... 434 e-120 ref|YP_004751061.1| 50S ribosomal subunit protein L3 [Collimonas... 395 e-108 ref|ZP_08272688.1| LSU ribosomal protein L3p (L3e) [Oxalobactera... 388 e-106 ref|YP_001355101.1| large subunit ribosomal protein L3 [Janthino... 382 e-104 ref|YP_001101396.1| 50S ribosomal protein L3 [Herminiimonas arse... 380 e-103 ref|ZP_04579995.1| large subunit ribosomal protein L3 [Oxalobact... 367 e-100 ref|ZP_04577845.1| 50S ribosomal protein L3 [Oxalobacter formige... 367 e-100 ref|YP_004028696.1| LSU ribosomal protein L3P [Burkholderia rhiz... 365 3e-99 ref|ZP_02891689.1| ribosomal protein L3 [Burkholderia ambifaria ... 364 4e-99 ref|YP_772161.1| 50S ribosomal protein L3 [Burkholderia ambifari... 364 4e-99 >ref|YP_003773548.1| 50S ribosomal protein L3 [Herbaspirillum seropedicae SmR1] gb|ADJ61640.1| 50S ribosomal subunit L3 protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust. Identities = 218/218 (100%), Positives = 218/218 (100%) Query: 1 MSLGLVGRKVGMMRIFTEDGDSIPVTVLDVSNNRVTQIKTPEVDGYSAVQVTFGQRRASR 60 MSLGLVGRKVGMMRIFTEDGDSIPVTVLDVSNNRVTQIKTPEVDGYSAVQVTFGQRRASR Sbjct: 5 MSLGLVGRKVGMMRIFTEDGDSIPVTVLDVSNNRVTQIKTPEVDGYSAVQVTFGQRRASR 64 Query: 61 VVKAAAGHFAKAGVEAGTVLKEFRVDASKAAELKAGDVVGIGMFEAGQKVDVQGVSIGKG 120 VVKAAAGHFAKAGVEAGTVLKEFRVDASKAAELKAGDVVGIGMFEAGQKVDVQGVSIGKG Sbjct: 65 VVKAAAGHFAKAGVEAGTVLKEFRVDASKAAELKAGDVVGIGMFEAGQKVDVQGVSIGKG 124 Query: 121 YAGTIKRYNFSSGRATHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHLGDVKTTVQNLEI 180 YAGTIKRYNFSSGRATHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHLGDVKTTVQNLEI Sbjct: 125 YAGTIKRYNFSSGRATHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHLGDVKTTVQNLEI 184 Query: 181 ARVDAERQLLLVKGAVPGAKNGQVIVSPAVKVKAKKGA 218 ARVDAERQLLLVKGAVPGAKNGQVIVSPAVKVKAKKGA Sbjct: 185 ARVDAERQLLLVKGAVPGAKNGQVIVSPAVKVKAKKGA 222 >ref|YP_004751061.1| 50S ribosomal subunit protein L3 [Collimonas fungivorans Ter331] gb|AEK60238.1| 50S ribosomal subunit protein L3 [Collimonas fungivorans Ter331] Length = 271 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 189/218 (86%), Positives = 207/218 (94%) Query: 1 MSLGLVGRKVGMMRIFTEDGDSIPVTVLDVSNNRVTQIKTPEVDGYSAVQVTFGQRRASR 60 MSLGLVGRKVGMMRIFTEDGDSIPVTVLDVSNNRVTQIKTPE DGY+AVQV FG RRASR Sbjct: 54 MSLGLVGRKVGMMRIFTEDGDSIPVTVLDVSNNRVTQIKTPETDGYTAVQVAFGSRRASR 113 Query: 61 VVKAAAGHFAKAGVEAGTVLKEFRVDASKAAELKAGDVVGIGMFEAGQKVDVQGVSIGKG 120 V KAAAGH+AKAGVEAGT+L+EFR+D++KA+ELKAG+V+ +FE GQKVDVQGVSIGKG Sbjct: 114 VTKAAAGHYAKAGVEAGTILREFRIDSTKASELKAGEVIAASLFEVGQKVDVQGVSIGKG 173 Query: 121 YAGTIKRYNFSSGRATHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHLGDVKTTVQNLEI 180 YAGTIKR+NF+SGRA+HGNSRSHNVPGSIGMAQDPGRVFPGKRMTGH+GDV T QNLEI Sbjct: 174 YAGTIKRHNFASGRASHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHMGDVTVTTQNLEI 233 Query: 181 ARVDAERQLLLVKGAVPGAKNGQVIVSPAVKVKAKKGA 218 ARVDAERQLLLVKGAVPGAKNGQV+VSPA+K+KAKKGA Sbjct: 234 ARVDAERQLLLVKGAVPGAKNGQVVVSPAIKIKAKKGA 271 >ref|ZP_08272688.1| LSU ribosomal protein L3p (L3e) [Oxalobacteraceae bacterium IMCC9480] gb|EGF33840.1| LSU ribosomal protein L3p (L3e) [Oxalobacteraceae bacterium IMCC9480] Length = 218 Score = 388 bits (996), Expect = e-106, Method: Compositional matrix adjust. Identities = 186/218 (85%), Positives = 204/218 (93%) Query: 1 MSLGLVGRKVGMMRIFTEDGDSIPVTVLDVSNNRVTQIKTPEVDGYSAVQVTFGQRRASR 60 MSLGLVGRKVGMMRIFT+DGDSIPVTV+DVSNNRVTQIKTPE DGY++VQV FGQRRASR Sbjct: 1 MSLGLVGRKVGMMRIFTDDGDSIPVTVVDVSNNRVTQIKTPETDGYTSVQVAFGQRRASR 60 Query: 61 VVKAAAGHFAKAGVEAGTVLKEFRVDASKAAELKAGDVVGIGMFEAGQKVDVQGVSIGKG 120 V +A AGH AKAGVEAGTVLKEFR+DA KA+E+KAGD+V +FE GQKVDVQG+SIGKG Sbjct: 61 VNQATAGHHAKAGVEAGTVLKEFRIDAVKASEMKAGDIVAASLFEVGQKVDVQGISIGKG 120 Query: 121 YAGTIKRYNFSSGRATHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHLGDVKTTVQNLEI 180 YAG IKRYNFSSGRATHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGH+GDV T QNLEI Sbjct: 121 YAGVIKRYNFSSGRATHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHMGDVTVTTQNLEI 180 Query: 181 ARVDAERQLLLVKGAVPGAKNGQVIVSPAVKVKAKKGA 218 AR+DA+RQLLL+KGAVPGAKNG+V+VSPAVK+KAKKGA Sbjct: 181 ARIDADRQLLLIKGAVPGAKNGKVVVSPAVKIKAKKGA 218 >ref|YP_001355101.1| large subunit ribosomal protein L3 [Janthinobacterium sp. Marseille] sp|A6T3K4.1|RL3_JANMA RecName: Full=50S ribosomal protein L3 gb|ABR89086.1| large subunit ribosomal protein L3 [Janthinobacterium sp. Marseille] Length = 224 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 189/215 (87%), Positives = 199/215 (92%) Query: 4 GLVGRKVGMMRIFTEDGDSIPVTVLDVSNNRVTQIKTPEVDGYSAVQVTFGQRRASRVVK 63 GL+GRKVGMMRIFT+DGDSIPVTVLDVSNNRVTQIKT EVDGYSAVQV FG RRASRV K Sbjct: 10 GLLGRKVGMMRIFTDDGDSIPVTVLDVSNNRVTQIKTSEVDGYSAVQVAFGSRRASRVNK 69 Query: 64 AAAGHFAKAGVEAGTVLKEFRVDASKAAELKAGDVVGIGMFEAGQKVDVQGVSIGKGYAG 123 A+AGHFAKAGVEAGTVLKEFRV A+ A+ELK GDV+ +FE GQKVDVQGV+IGKGYAG Sbjct: 70 ASAGHFAKAGVEAGTVLKEFRVAATAASELKVGDVIAASLFEVGQKVDVQGVTIGKGYAG 129 Query: 124 TIKRYNFSSGRATHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHLGDVKTTVQNLEIARV 183 IKRYNF SGRATHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHLGDV T QNLEIAR+ Sbjct: 130 VIKRYNFGSGRATHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHLGDVTRTTQNLEIARI 189 Query: 184 DAERQLLLVKGAVPGAKNGQVIVSPAVKVKAKKGA 218 DA+RQLLLVKGAVPGAKNGQVIVSPAVKVKAKKGA Sbjct: 190 DADRQLLLVKGAVPGAKNGQVIVSPAVKVKAKKGA 224 >ref|YP_001101396.1| 50S ribosomal protein L3 [Herminiimonas arsenicoxydans] sp|A4G9T8.1|RL3_HERAR RecName: Full=50S ribosomal protein L3 emb|CAL63275.1| 50S ribosomal subunit protein L3 [Herminiimonas arsenicoxydans] Length = 224 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 187/215 (86%), Positives = 202/215 (93%) Query: 4 GLVGRKVGMMRIFTEDGDSIPVTVLDVSNNRVTQIKTPEVDGYSAVQVTFGQRRASRVVK 63 GL+GRKVGMMRIFT+DGDSIPVTVLDVSNNRVTQIKTP+VDGYSAVQV FG RRASRV K Sbjct: 10 GLLGRKVGMMRIFTDDGDSIPVTVLDVSNNRVTQIKTPDVDGYSAVQVAFGSRRASRVNK 69 Query: 64 AAAGHFAKAGVEAGTVLKEFRVDASKAAELKAGDVVGIGMFEAGQKVDVQGVSIGKGYAG 123 A+AGH AKAGVEAGTVLKEFRV A+ A+ELK GDV+ +FE GQKVDVQGV+IGKGYAG Sbjct: 70 ASAGHHAKAGVEAGTVLKEFRVAATAASELKVGDVIAASLFEVGQKVDVQGVTIGKGYAG 129 Query: 124 TIKRYNFSSGRATHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHLGDVKTTVQNLEIARV 183 TIKR++F+SGRATHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHLGDV T+QNLEIAR+ Sbjct: 130 TIKRHHFASGRATHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHLGDVARTMQNLEIARI 189 Query: 184 DAERQLLLVKGAVPGAKNGQVIVSPAVKVKAKKGA 218 DA+RQLLLVKGAVPGAKNGQVIVSPAVKVKAKKGA Sbjct: 190 DADRQLLLVKGAVPGAKNGQVIVSPAVKVKAKKGA 224 >ref|ZP_04579995.1| large subunit ribosomal protein L3 [Oxalobacter formigenes OXCC13] gb|EEO30968.1| large subunit ribosomal protein L3 [Oxalobacter formigenes OXCC13] Length = 222 Score = 367 bits (943), Expect = e-100, Method: Compositional matrix adjust. Identities = 179/218 (82%), Positives = 198/218 (90%) Query: 1 MSLGLVGRKVGMMRIFTEDGDSIPVTVLDVSNNRVTQIKTPEVDGYSAVQVTFGQRRASR 60 MSLGL+GRKVGMMRIFT++GDSIPVTV+DVS+NRVTQ+KT E DGY+AVQV FG+RR SR Sbjct: 5 MSLGLIGRKVGMMRIFTDEGDSIPVTVVDVSDNRVTQVKTTETDGYTAVQVAFGKRRPSR 64 Query: 61 VVKAAAGHFAKAGVEAGTVLKEFRVDASKAAELKAGDVVGIGMFEAGQKVDVQGVSIGKG 120 V KAAAGHFAKAGVEAGTVL+EF VD SKAAE+KAGDV+ MFEAGQK+DVQGVSIGKG Sbjct: 65 VNKAAAGHFAKAGVEAGTVLREFTVDESKAAEVKAGDVLPATMFEAGQKIDVQGVSIGKG 124 Query: 121 YAGTIKRYNFSSGRATHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHLGDVKTTVQNLEI 180 YAGTIKR+NF+SGRATHGNS SHNVPGSIGM QDPGRVFPGK+MTGH+GDV T+QNLEI Sbjct: 125 YAGTIKRHNFASGRATHGNSLSHNVPGSIGMNQDPGRVFPGKKMTGHMGDVTKTIQNLEI 184 Query: 181 ARVDAERQLLLVKGAVPGAKNGQVIVSPAVKVKAKKGA 218 AR+DAER LLLVKGAVPGAKN +VIV PAVK K KGA Sbjct: 185 ARIDAERNLLLVKGAVPGAKNAEVIVRPAVKTKVSKGA 222 >ref|ZP_04577845.1| 50S ribosomal protein L3 [Oxalobacter formigenes HOxBLS] gb|EEO28807.1| 50S ribosomal protein L3 [Oxalobacter formigenes HOxBLS] Length = 222 Score = 367 bits (943), Expect = e-100, Method: Compositional matrix adjust. Identities = 178/218 (81%), Positives = 198/218 (90%) Query: 1 MSLGLVGRKVGMMRIFTEDGDSIPVTVLDVSNNRVTQIKTPEVDGYSAVQVTFGQRRASR 60 MSLGL+GRKVGMMRIFT++GDSIPVTV+DVS+NRVTQ+KT E DGY+AVQV FG+RR SR Sbjct: 5 MSLGLIGRKVGMMRIFTDEGDSIPVTVVDVSDNRVTQVKTTETDGYAAVQVAFGKRRPSR 64 Query: 61 VVKAAAGHFAKAGVEAGTVLKEFRVDASKAAELKAGDVVGIGMFEAGQKVDVQGVSIGKG 120 V KAAAGH+AKAGVEAGTVL+EFRVDA+KAAE+KAGDVV + +FE GQK+DVQGVSIGKG Sbjct: 65 VNKAAAGHYAKAGVEAGTVLREFRVDATKAAEMKAGDVVPVTLFEVGQKIDVQGVSIGKG 124 Query: 121 YAGTIKRYNFSSGRATHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHLGDVKTTVQNLEI 180 YAGTIKR+NF SGRATHGNS SHNVPGSIGM QDPGRVFPGK+MTGH+GD TVQNLEI Sbjct: 125 YAGTIKRHNFGSGRATHGNSLSHNVPGSIGMNQDPGRVFPGKKMTGHMGDETRTVQNLEI 184 Query: 181 ARVDAERQLLLVKGAVPGAKNGQVIVSPAVKVKAKKGA 218 AR+DAER LLLVKGAVPGAKN QV+V PAVK K KGA Sbjct: 185 ARIDAERNLLLVKGAVPGAKNAQVVVCPAVKTKVSKGA 222 >ref|YP_004028696.1| LSU ribosomal protein L3P [Burkholderia rhizoxinica HKI 454] emb|CBW74552.1| LSU ribosomal protein L3P [Burkholderia rhizoxinica HKI 454] Length = 247 Score = 365 bits (937), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 178/218 (81%), Positives = 195/218 (89%) Query: 1 MSLGLVGRKVGMMRIFTEDGDSIPVTVLDVSNNRVTQIKTPEVDGYSAVQVTFGQRRASR 60 MSLGLVGRKVGM RIFT DGDSIPVTVLDVS+NRVTQIKT E DGY+AVQV FG+RRASR Sbjct: 30 MSLGLVGRKVGMTRIFTADGDSIPVTVLDVSDNRVTQIKTVETDGYTAVQVAFGERRASR 89 Query: 61 VVKAAAGHFAKAGVEAGTVLKEFRVDASKAAELKAGDVVGIGMFEAGQKVDVQGVSIGKG 120 V K AGH AKAGV+AG +LKEFR++A KAAEL G VVG+ +FE GQKVDVQGVSIGKG Sbjct: 90 VTKPLAGHLAKAGVQAGEILKEFRIEADKAAELSPGSVVGVDLFEVGQKVDVQGVSIGKG 149 Query: 121 YAGTIKRYNFSSGRATHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHLGDVKTTVQNLEI 180 YAGTIKRYNF SGRA+HGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHLGDV T QNLEI Sbjct: 150 YAGTIKRYNFGSGRASHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHLGDVTATTQNLEI 209 Query: 181 ARVDAERQLLLVKGAVPGAKNGQVIVSPAVKVKAKKGA 218 AR+DA+R+L+LVKGAVPGAK G+V V+PAVK +AKKGA Sbjct: 210 ARIDAQRKLILVKGAVPGAKGGKVFVTPAVKARAKKGA 247 >ref|ZP_02891689.1| ribosomal protein L3 [Burkholderia ambifaria IOP40-10] ref|ZP_02907506.1| ribosomal protein L3 [Burkholderia ambifaria MEX-5] ref|YP_001806993.1| 50S ribosomal protein L3 [Burkholderia ambifaria MC40-6] sp|B1YRD0.1|RL3_BURA4 RecName: Full=50S ribosomal protein L3 gb|EDT02697.1| ribosomal protein L3 [Burkholderia ambifaria IOP40-10] gb|EDT41325.1| ribosomal protein L3 [Burkholderia ambifaria MEX-5] gb|ACB62777.1| ribosomal protein L3 [Burkholderia ambifaria MC40-6] Length = 216 Score = 364 bits (935), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 180/216 (83%), Positives = 192/216 (88%) Query: 1 MSLGLVGRKVGMMRIFTEDGDSIPVTVLDVSNNRVTQIKTPEVDGYSAVQVTFGQRRASR 60 MSLGLVGRKVGM RIFT +GDSIPVTVLDVS+NRVTQIKT E DGY+AVQV FG RRASR Sbjct: 1 MSLGLVGRKVGMTRIFTAEGDSIPVTVLDVSDNRVTQIKTVETDGYTAVQVAFGSRRASR 60 Query: 61 VVKAAAGHFAKAGVEAGTVLKEFRVDASKAAELKAGDVVGIGMFEAGQKVDVQGVSIGKG 120 V K AGH AKAGVEAG +LKEFR+DA+KAAEL G VVG +FE GQKVDVQGVSIGKG Sbjct: 61 VTKPLAGHLAKAGVEAGEILKEFRIDAAKAAELSNGAVVGADLFEVGQKVDVQGVSIGKG 120 Query: 121 YAGTIKRYNFSSGRATHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHLGDVKTTVQNLEI 180 YAGTIKRYNFSSGRATHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHLGDV TVQNLEI Sbjct: 121 YAGTIKRYNFSSGRATHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHLGDVTVTVQNLEI 180 Query: 181 ARVDAERQLLLVKGAVPGAKNGQVIVSPAVKVKAKK 216 AR+DAER+LLLVKGA+PGAK G+V V+PAVK K K Sbjct: 181 ARIDAERKLLLVKGAIPGAKGGKVFVTPAVKTKGAK 216 >ref|YP_772161.1| 50S ribosomal protein L3 [Burkholderia ambifaria AMMD] ref|YP_001118178.1| 50S ribosomal protein L3 [Burkholderia vietnamiensis G4] sp|Q0BJ46.1|RL3_BURCM RecName: Full=50S ribosomal protein L3 sp|A4JAP0.1|RL3_BURVG RecName: Full=50S ribosomal protein L3 gb|ABI85827.1| LSU ribosomal protein L3P [Burkholderia ambifaria AMMD] gb|ABO53343.1| LSU ribosomal protein L3P [Burkholderia vietnamiensis G4] Length = 217 Score = 364 bits (935), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 180/216 (83%), Positives = 192/216 (88%) Query: 1 MSLGLVGRKVGMMRIFTEDGDSIPVTVLDVSNNRVTQIKTPEVDGYSAVQVTFGQRRASR 60 MSLGLVGRKVGM RIFT +GDSIPVTVLDVS+NRVTQIKT E DGY+AVQV FG RRASR Sbjct: 2 MSLGLVGRKVGMTRIFTAEGDSIPVTVLDVSDNRVTQIKTVETDGYTAVQVAFGSRRASR 61 Query: 61 VVKAAAGHFAKAGVEAGTVLKEFRVDASKAAELKAGDVVGIGMFEAGQKVDVQGVSIGKG 120 V K AGH AKAGVEAG +LKEFR+DA+KAAEL G VVG +FE GQKVDVQGVSIGKG Sbjct: 62 VTKPLAGHLAKAGVEAGEILKEFRIDAAKAAELSNGAVVGADLFEVGQKVDVQGVSIGKG 121 Query: 121 YAGTIKRYNFSSGRATHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHLGDVKTTVQNLEI 180 YAGTIKRYNFSSGRATHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHLGDV TVQNLEI Sbjct: 122 YAGTIKRYNFSSGRATHGNSRSHNVPGSIGMAQDPGRVFPGKRMTGHLGDVTVTVQNLEI 181 Query: 181 ARVDAERQLLLVKGAVPGAKNGQVIVSPAVKVKAKK 216 AR+DAER+LLLVKGA+PGAK G+V V+PAVK K K Sbjct: 182 ARIDAERKLLLVKGAIPGAKGGKVFVTPAVKTKGAK 217