BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0319.p (404 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773582.1| branched-chain amino acid ABC transporter pe... 828 0.0 ref|ZP_08272537.1| Leucine-, isoleucine-, valine-, threonine-, a... 596 e-168 ref|ZP_06840389.1| Extracellular ligand-binding receptor [Burkho... 579 e-163 ref|YP_560960.1| branched chain amino acid ABC transporter perip... 578 e-163 ref|YP_001897524.1| branched-chain amino acid ABC transporter pe... 576 e-162 ref|ZP_08400961.1| putative substrate-binding periplasmic (pbp) ... 575 e-162 ref|YP_004755053.1| leucine-, isoleucine-, valine-, threonine-, ... 573 e-161 ref|YP_001859262.1| extracellular ligand-binding receptor [Burkh... 572 e-161 ref|ZP_01914818.1| ABC branched-chain amino acid family transpor... 569 e-160 ref|YP_004230013.1| extracellular ligand-binding receptor [Burkh... 569 e-160 >ref|YP_003773582.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ61674.1| ABC-type branched-chain amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 404 Score = 828 bits (2138), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/404 (99%), Positives = 403/404 (99%) Query: 1 MTPFIRRAALSATACALLGAAILPSAQAAGDTIKIGFITDMSGTYADFDGQGGVEAIRMA 60 MTPFIRRAALSATACALLGAAILPSAQAAGDTIKIGFITDMSGTYADFDGQGGVEAIRMA Sbjct: 1 MTPFIRRAALSATACALLGAAILPSAQAAGDTIKIGFITDMSGTYADFDGQGGVEAIRMA 60 Query: 61 IADAGGAINGKKVELVFADHQNKADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAG 120 IADAGGAINGKKVELVFADHQNKADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAG Sbjct: 61 IADAGGAINGKKVELVFADHQNKADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAG 120 Query: 121 EKKKVFISVGAGTTRQTNEECNAYTIQYAYDTTALARGTGAAITRQGGKSWYFLTADYAF 180 EKKKVFISVGAGTTRQTNEECNAYTIQYAYDTTALARGTGAAITRQGGKSWYFLTADYAF Sbjct: 121 EKKKVFISVGAGTTRQTNEECNAYTIQYAYDTTALARGTGAAITRQGGKSWYFLTADYAF 180 Query: 181 GTSLEKDTSEVVKSNGGNVVGATRVPLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAI 240 GTSLEKDTSEVVKSNGGNVVGATRVPLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAI Sbjct: 181 GTSLEKDTSEVVKSNGGNVVGATRVPLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAI 240 Query: 241 KAANEFGVNKTMKLAGLLIFINDTHSLGLPLTQGMYLTDGWYWDLNDQTRAWANRYFMKM 300 KAANEFGVNKTMKLAGLLIFINDTHSLGL LTQGMYLTDGWYWDLNDQTRAWANRYFMKM Sbjct: 241 KAANEFGVNKTMKLAGLLIFINDTHSLGLSLTQGMYLTDGWYWDLNDQTRAWANRYFMKM 300 Query: 301 KKMPSMFQAGDASAVGQYLKAVKAVGSTDADKVMDYLRKNRINDFFTSNGVVRPDGRMVH 360 KKMPSMFQAGDASAVGQYLKAVKAVGSTDADKVMDYLRKNRINDFFTSNGVVRPDGRMVH Sbjct: 301 KKMPSMFQAGDASAVGQYLKAVKAVGSTDADKVMDYLRKNRINDFFTSNGVVRPDGRMVH 360 Query: 361 DMYLMEVKKPSESKRPWDYYKLVQTIPGEQAYMTKAESKCALWK 404 DMYLMEVKKPSESKRPWDYYKLVQTIPGEQAYMTKAESKCALWK Sbjct: 361 DMYLMEVKKPSESKRPWDYYKLVQTIPGEQAYMTKAESKCALWK 404 >ref|ZP_08272537.1| Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF33985.1| Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Oxalobacteraceae bacterium IMCC9480] Length = 409 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 286/404 (70%), Positives = 328/404 (81%), Gaps = 2/404 (0%) Query: 1 MTPFIRRAALSATACALLGAAILPSAQAAGDTIKIGFITDMSGTYADFDGQGGVEAIRMA 60 + P A+SA CAL A SAQ +GDT+KIGFITD+SG Y+D DGQGGVEAI+MA Sbjct: 8 IAPKTMTLAISAV-CALAFAGS-ASAQISGDTVKIGFITDISGLYSDIDGQGGVEAIKMA 65 Query: 61 IADAGGAINGKKVELVFADHQNKADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAG 120 IAD GG +NGKK+EL+ ADHQNKADIAA+KAREWFD+ GVDML+GG NS +LAM KVA Sbjct: 66 IADFGGTLNGKKIELISADHQNKADIAASKAREWFDQQGVDMLIGGTNSGTNLAMSKVAL 125 Query: 121 EKKKVFISVGAGTTRQTNEECNAYTIQYAYDTTALARGTGAAITRQGGKSWYFLTADYAF 180 EKKK FIS+GAGT R TNEEC YT+ YAYDT ALA+GTGAA+ +QGGKSW+FLTADYAF Sbjct: 126 EKKKPFISIGAGTARLTNEECTPYTLHYAYDTVALAKGTGAAVVKQGGKSWFFLTADYAF 185 Query: 181 GTSLEKDTSEVVKSNGGNVVGATRVPLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAI 240 G SLE DT+ VVK+NGG V G+ R PL+ SDFSSFLLQAQ+SKAQILGLA AGGD +NAI Sbjct: 186 GASLENDTTSVVKANGGTVSGSVRHPLSASDFSSFLLQAQASKAQILGLANAGGDTVNAI 245 Query: 241 KAANEFGVNKTMKLAGLLIFINDTHSLGLPLTQGMYLTDGWYWDLNDQTRAWANRYFMKM 300 KAANEFGVNKTMKLAGLL+FIND HSL LTQGMYLTD WYWD ND++R W+ RYF KM Sbjct: 246 KAANEFGVNKTMKLAGLLMFINDVHSLTPKLTQGMYLTDSWYWDQNDESRKWSRRYFEKM 305 Query: 301 KKMPSMFQAGDASAVGQYLKAVKAVGSTDADKVMDYLRKNRINDFFTSNGVVRPDGRMVH 360 KKMPS QA D SA YL AVKA GS D DKVM +RK +IND + NG++R DG M+H Sbjct: 306 KKMPSSLQAADYSATLTYLNAVKATGSDDTDKVMAQMRKTKINDMYAKNGMIRDDGSMIH 365 Query: 361 DMYLMEVKKPSESKRPWDYYKLVQTIPGEQAYMTKAESKCALWK 404 DMYLM+VK P+ESK PWDYYK++QTIPGEQA+ TKAE+KCA WK Sbjct: 366 DMYLMQVKSPTESKYPWDYYKVIQTIPGEQAFTTKAETKCASWK 409 >ref|ZP_06840389.1| Extracellular ligand-binding receptor [Burkholderia sp. Ch1-1] gb|EFG72109.1| Extracellular ligand-binding receptor [Burkholderia sp. Ch1-1] Length = 404 Score = 579 bits (1492), Expect = e-163, Method: Compositional matrix adjust. Identities = 278/403 (68%), Positives = 328/403 (81%), Gaps = 4/403 (0%) Query: 3 PFIRRAALSATACALLGAAI-LPSAQAAGDTIKIGFITDMSGTYADFDGQGGVEAIRMAI 61 P R A L A GAA+ + SAQAA D++KIGFITDMSG YAD DGQGG+EAIRMA+ Sbjct: 5 PLARLATLCFAVAA--GAALTMGSAQAADDSVKIGFITDMSGLYADIDGQGGLEAIRMAV 62 Query: 62 ADAGGAINGKKVELVFADHQNKADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAGE 121 AD GG +NGK + +V+ADHQNKADIAA++AREWFDRDGVDML+GG NSA L+M VAGE Sbjct: 63 ADFGGKVNGKPITVVYADHQNKADIAASRAREWFDRDGVDMLIGGTNSATGLSMNTVAGE 122 Query: 122 KKKVFISVGAGTTRQTNEECNAYTIQYAYDTTALARGTGAAITRQGGKSWYFLTADYAFG 181 KKKV+IS+GAG TNE+C YTI YAYDTTALA+GTG+A+T+QGGK+WYFLTADYAFG Sbjct: 123 KKKVYISIGAGADTLTNEQCTPYTIHYAYDTTALAKGTGSAVTKQGGKTWYFLTADYAFG 182 Query: 182 TSLEKDTSEVVKSNGGNVVGATRVPLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAIK 241 +LEK+TS+VVK+NGG V+GA R PL+ SDFSSFLLQAQ+SKAQILGLA AGGD IN+IK Sbjct: 183 KALEKNTSDVVKANGGQVLGAVRHPLSASDFSSFLLQAQASKAQILGLANAGGDTINSIK 242 Query: 242 AANEFGVNKTMKLAGLLIFINDTHSLGLPLTQGMYLTDGWYWDLNDQTRAWANRYFMKMK 301 AA EFG+ KTMKLA LL+FI+D HSLGL TQG+ LTD WYW+ + TR WA RYF K K Sbjct: 243 AAKEFGITKTMKLAALLVFIDDIHSLGLETTQGLVLTDSWYWNKDATTRKWAERYFDKTK 302 Query: 302 KMPSMFQAGDASAVGQYLKAVKAVGSTDADKVMDYLRKNRINDFFTSNGVVRPDGRMVHD 361 KMPS QA D SA YL AVKAVGSTD+DKVM L+K +I+DF+ + G +R DG M+HD Sbjct: 303 KMPSSLQAADYSATITYLNAVKAVGSTDSDKVMAQLKKTKIDDFY-AKGYIRQDGSMIHD 361 Query: 362 MYLMEVKKPSESKRPWDYYKLVQTIPGEQAYMTKAESKCALWK 404 MYLM+VK P+ESK PWDYYK+ TIPGEQA+ TKAE++CALWK Sbjct: 362 MYLMQVKTPAESKEPWDYYKITATIPGEQAFTTKAETRCALWK 404 >ref|YP_560960.1| branched chain amino acid ABC transporter periplasmic ligand-binding protein [Burkholderia xenovorans LB400] gb|ABE32908.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Burkholderia xenovorans LB400] Length = 404 Score = 578 bits (1489), Expect = e-163, Method: Compositional matrix adjust. Identities = 276/403 (68%), Positives = 329/403 (81%), Gaps = 4/403 (0%) Query: 3 PFIRRAALSATACALLGAAI-LPSAQAAGDTIKIGFITDMSGTYADFDGQGGVEAIRMAI 61 P R A L A GAA+ + SAQAA D++KIGFITDMSG YAD DGQGG+EAIRMA+ Sbjct: 5 PLARLATLCFAVAA--GAALTMGSAQAADDSVKIGFITDMSGLYADIDGQGGLEAIRMAV 62 Query: 62 ADAGGAINGKKVELVFADHQNKADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAGE 121 AD GG +NGK + +V+ADHQNKADIAA++AREWFDRDGVDML+GG NSA L+M VAGE Sbjct: 63 ADFGGKVNGKPITVVYADHQNKADIAASRAREWFDRDGVDMLIGGTNSATGLSMNTVAGE 122 Query: 122 KKKVFISVGAGTTRQTNEECNAYTIQYAYDTTALARGTGAAITRQGGKSWYFLTADYAFG 181 KKKV+IS+GAG TNE+C YT+ YAYDTTALA+GTG+A+T+QGGK+WYFLTADYAFG Sbjct: 123 KKKVYISIGAGADTLTNEQCTPYTVHYAYDTTALAKGTGSAVTKQGGKTWYFLTADYAFG 182 Query: 182 TSLEKDTSEVVKSNGGNVVGATRVPLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAIK 241 +LEK+T++VVK+NGG V+GA R PL+ SDFSSFLLQAQ+SKAQILGLA AGGD IN+IK Sbjct: 183 KALEKNTADVVKANGGQVLGAVRHPLSASDFSSFLLQAQASKAQILGLANAGGDTINSIK 242 Query: 242 AANEFGVNKTMKLAGLLIFINDTHSLGLPLTQGMYLTDGWYWDLNDQTRAWANRYFMKMK 301 AA EFG+ KTMKLA LL+FI+D HSLGL TQG+ LTD WYW+ + TR WA RYF KMK Sbjct: 243 AAKEFGITKTMKLAALLVFIDDIHSLGLETTQGLVLTDSWYWNKDATTRKWAERYFDKMK 302 Query: 302 KMPSMFQAGDASAVGQYLKAVKAVGSTDADKVMDYLRKNRINDFFTSNGVVRPDGRMVHD 361 KMPS QA D SA YL AVKAVGSTD+DKVM L+K +I+DF+ + G +R DG M+HD Sbjct: 303 KMPSSLQAADYSATMTYLNAVKAVGSTDSDKVMAQLKKTKIDDFY-AKGYIRQDGSMIHD 361 Query: 362 MYLMEVKKPSESKRPWDYYKLVQTIPGEQAYMTKAESKCALWK 404 MYLM+VK P+ES+ PWDYYK+ TIPGEQA+ TKAE++CALWK Sbjct: 362 MYLMQVKTPAESREPWDYYKITATIPGEQAFTTKAETRCALWK 404 >ref|YP_001897524.1| branched-chain amino acid ABC transporter peripasmic protein [Burkholderia phytofirmans PsJN] gb|ACD18300.1| Extracellular ligand-binding receptor [Burkholderia phytofirmans PsJN] Length = 404 Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust. Identities = 276/403 (68%), Positives = 327/403 (81%), Gaps = 4/403 (0%) Query: 3 PFIRRAALSATACALLGAAI-LPSAQAAGDTIKIGFITDMSGTYADFDGQGGVEAIRMAI 61 P R A L A GAA+ + SAQAA D +KIGFITDMSG YAD DGQGG+EAIRMA+ Sbjct: 5 PLARLATLCFAVAA--GAALTMGSAQAADDAVKIGFITDMSGLYADIDGQGGLEAIRMAV 62 Query: 62 ADAGGAINGKKVELVFADHQNKADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAGE 121 AD GG +NGK + +V+ADHQNKADIAA++AREWFDRDGVD+L+GG NSA L+M VAGE Sbjct: 63 ADFGGKVNGKPITVVYADHQNKADIAASRAREWFDRDGVDLLIGGTNSATGLSMNTVAGE 122 Query: 122 KKKVFISVGAGTTRQTNEECNAYTIQYAYDTTALARGTGAAITRQGGKSWYFLTADYAFG 181 KKKV+IS+GAG TNE+C YTI YAYDTTALA+GTG+A+T+QGGK+WYFLTADYAFG Sbjct: 123 KKKVYISIGAGADTLTNEQCTPYTIHYAYDTTALAKGTGSAVTKQGGKTWYFLTADYAFG 182 Query: 182 TSLEKDTSEVVKSNGGNVVGATRVPLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAIK 241 +LEK+TS+VVK+NGG V+G R PL+ SDFSSFLLQAQ+SKAQILGLA AGGD IN+IK Sbjct: 183 KALEKNTSDVVKANGGQVLGTVRHPLSASDFSSFLLQAQASKAQILGLANAGGDTINSIK 242 Query: 242 AANEFGVNKTMKLAGLLIFINDTHSLGLPLTQGMYLTDGWYWDLNDQTRAWANRYFMKMK 301 AA EFG+ KTMKLA LL+FI+D HSLGL TQG+ LTD WYW+ + TR WA RYF KM+ Sbjct: 243 AAKEFGITKTMKLAALLMFIDDVHSLGLETTQGLVLTDSWYWNKDATTRKWAQRYFDKMR 302 Query: 302 KMPSMFQAGDASAVGQYLKAVKAVGSTDADKVMDYLRKNRINDFFTSNGVVRPDGRMVHD 361 KMPS QA D SA YL AVKAVGSTD+DKVM L+K +I+DF+ + G +R DG M+HD Sbjct: 303 KMPSSLQAADYSATMTYLNAVKAVGSTDSDKVMAQLKKTKIDDFY-AKGYIRQDGSMIHD 361 Query: 362 MYLMEVKKPSESKRPWDYYKLVQTIPGEQAYMTKAESKCALWK 404 MYLM+VK P+ESK PWDYYK+ TIPGEQA+ TKAE++CALWK Sbjct: 362 MYLMQVKTPAESKEPWDYYKITATIPGEQAFTTKAETRCALWK 404 >ref|ZP_08400961.1| putative substrate-binding periplasmic (pbp) ABC transporter protein [Rubrivivax benzoatilyticus JA2] gb|EGJ09294.1| putative substrate-binding periplasmic (pbp) ABC transporter protein [Rubrivivax benzoatilyticus JA2] Length = 402 Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust. Identities = 275/396 (69%), Positives = 323/396 (81%), Gaps = 3/396 (0%) Query: 12 ATACALL-GAAILPSAQA--AGDTIKIGFITDMSGTYADFDGQGGVEAIRMAIADAGGAI 68 ATAC+LL GAA+ SA A +GD I+IG ITDMSG Y+D DG GGVEAIRMAIADAGG++ Sbjct: 7 ATACSLLLGAAVGTSAHAQISGDVIRIGLITDMSGLYSDIDGAGGVEAIRMAIADAGGSV 66 Query: 69 NGKKVELVFADHQNKADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAGEKKKVFIS 128 GKK+E+VFADHQNKAD+AA KAREWFD G+D+L+GG NS SLAM KVA EKKK FI+ Sbjct: 67 AGKKIEVVFADHQNKADVAAAKAREWFDTQGLDLLIGGTNSGTSLAMAKVAAEKKKPFIA 126 Query: 129 VGAGTTRQTNEECNAYTIQYAYDTTALARGTGAAITRQGGKSWYFLTADYAFGTSLEKDT 188 VGA T+ TN++CNAYT+ +AYDT ALA+GTG A+ + GGKSWYFLTADYAFG L+ DT Sbjct: 127 VGAATSALTNDQCNAYTVHWAYDTVALAKGTGNAVVKAGGKSWYFLTADYAFGAQLQNDT 186 Query: 189 SEVVKSNGGNVVGATRVPLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAIKAANEFGV 248 S VVK+ GGNVVG+ + PL+ +DFSSFLLQAQ+SKAQILGLA AGGD INAIKAANEFG+ Sbjct: 187 SAVVKAAGGNVVGSVKHPLSATDFSSFLLQAQASKAQILGLANAGGDTINAIKAANEFGI 246 Query: 249 NKTMKLAGLLIFINDTHSLGLPLTQGMYLTDGWYWDLNDQTRAWANRYFMKMKKMPSMFQ 308 K+MKLAGLL+FIND HSLGL TQGMYLTD WYW+ + +TRAW R+F KMK+MPS Q Sbjct: 247 TKSMKLAGLLVFINDIHSLGLKTTQGMYLTDSWYWNRDAETRAWGRRFFEKMKRMPSSLQ 306 Query: 309 AGDASAVGQYLKAVKAVGSTDADKVMDYLRKNRINDFFTSNGVVRPDGRMVHDMYLMEVK 368 AGD SA QYL AVKA G+ DADKV+ +RK R+ND F +G +R DGRMVHDMYLM+VK Sbjct: 307 AGDYSAATQYLAAVKATGTDDADKVLAQMRKTRVNDIFAKDGFIRGDGRMVHDMYLMQVK 366 Query: 369 KPSESKRPWDYYKLVQTIPGEQAYMTKAESKCALWK 404 P +S PWDYY +VQT GE+A+ TKAESKCALWK Sbjct: 367 APDKSVEPWDYYNVVQTFKGEEAWTTKAESKCALWK 402 >ref|YP_004755053.1| leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Collimonas fungivorans Ter331] gb|AEK64230.1| Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Collimonas fungivorans Ter331] Length = 408 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 272/404 (67%), Positives = 319/404 (78%) Query: 1 MTPFIRRAALSATACALLGAAILPSAQAAGDTIKIGFITDMSGTYADFDGQGGVEAIRMA 60 M ++ A++ + LG A SAQ +GDTIKIGFITDMS Y+D DG GG EAI+MA Sbjct: 5 MNIKLKTLAVAVGSTLALGLATQASAQISGDTIKIGFITDMSSVYSDIDGPGGAEAIKMA 64 Query: 61 IADAGGAINGKKVELVFADHQNKADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAG 120 IAD GGAINGKK+ELV ADHQNKADIA++KAREWFD+ G+DML+GG NS +LAM K+A Sbjct: 65 IADMGGAINGKKIELVVADHQNKADIASSKAREWFDQQGLDMLIGGTNSGTALAMAKIAV 124 Query: 121 EKKKVFISVGAGTTRQTNEECNAYTIQYAYDTTALARGTGAAITRQGGKSWYFLTADYAF 180 EKKK F +GAG+TR TNEEC YT+ YAYDT ALA GTG+A+ +QGGKSWYFLTADYAF Sbjct: 125 EKKKPFFEIGAGSTRLTNEECTPYTVHYAYDTYALAHGTGSAVVKQGGKSWYFLTADYAF 184 Query: 181 GTSLEKDTSEVVKSNGGNVVGATRVPLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAI 240 G SLEKDT+ VVKS+GG V+GA + PL SDFSSF+LQAQSSKAQI+GLA AGGD+IN++ Sbjct: 185 GASLEKDTTAVVKSSGGTVLGAVKHPLNASDFSSFMLQAQSSKAQIIGLANAGGDLINSV 244 Query: 241 KAANEFGVNKTMKLAGLLIFINDTHSLGLPLTQGMYLTDGWYWDLNDQTRAWANRYFMKM 300 KAANEFGV K KLAGLL+FIND HSL L TQGMYLTD WYWD ND++R WA RYF KM Sbjct: 245 KAANEFGVTKNAKLAGLLVFINDIHSLTLKQTQGMYLTDSWYWDQNDESRKWAKRYFEKM 304 Query: 301 KKMPSMFQAGDASAVGQYLKAVKAVGSTDADKVMDYLRKNRINDFFTSNGVVRPDGRMVH 360 KK PS QAGD SA QYL AVK +G+ D DKVM+ LRK + ND + N +R DGR+VH Sbjct: 305 KKEPSSLQAGDYSAAMQYLAAVKTIGTDDGDKVMEQLRKAKFNDMYAKNAYLRADGRVVH 364 Query: 361 DMYLMEVKKPSESKRPWDYYKLVQTIPGEQAYMTKAESKCALWK 404 DM L +VK P++SK PWDY +QTIPGEQA+ +KAESKCALWK Sbjct: 365 DMTLYQVKAPADSKYPWDYLNKIQTIPGEQAFASKAESKCALWK 408 >ref|YP_001859262.1| extracellular ligand-binding receptor [Burkholderia phymatum STM815] gb|ACC72216.1| Extracellular ligand-binding receptor [Burkholderia phymatum STM815] Length = 404 Score = 572 bits (1473), Expect = e-161, Method: Compositional matrix adjust. Identities = 268/380 (70%), Positives = 316/380 (83%), Gaps = 1/380 (0%) Query: 25 SAQAAGDTIKIGFITDMSGTYADFDGQGGVEAIRMAIADAGGAINGKKVELVFADHQNKA 84 SAQAA D +KIGFITDMSG YAD DGQGG+EAIRMA+AD GG +NGK +++V+ADHQNKA Sbjct: 26 SAQAADDAVKIGFITDMSGLYADIDGQGGLEAIRMAVADFGGKVNGKPIQVVYADHQNKA 85 Query: 85 DIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAGEKKKVFISVGAGTTRQTNEECNAY 144 DIAA++AREWFDRDGVDMLVGG NSA L+M +VAGEK KV+IS+GAG TNE+C Y Sbjct: 86 DIAASRAREWFDRDGVDMLVGGTNSATGLSMNQVAGEKHKVYISIGAGADTLTNEQCTPY 145 Query: 145 TIQYAYDTTALARGTGAAITRQGGKSWYFLTADYAFGTSLEKDTSEVVKSNGGNVVGATR 204 TI YAYDTTALA+GTG+A+T+QGGK+WYFLTADYAFG +LEK+T++VVK+NGG V+G R Sbjct: 146 TIHYAYDTTALAKGTGSAVTKQGGKTWYFLTADYAFGKALEKNTADVVKANGGQVLGEVR 205 Query: 205 VPLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAIKAANEFGVNKTMKLAGLLIFINDT 264 PL+ SDFSSFLLQAQ+SKAQILGLA AGGD IN+IKAA EFGV KTMKLA LL+FIND Sbjct: 206 HPLSASDFSSFLLQAQASKAQILGLANAGGDTINSIKAAKEFGVTKTMKLAALLVFINDI 265 Query: 265 HSLGLPLTQGMYLTDGWYWDLNDQTRAWANRYFMKMKKMPSMFQAGDASAVGQYLKAVKA 324 HSLGL TQ + LTD WYW+ + TR W+ RYF KM+KMPS QA D SA YLKAV+ Sbjct: 266 HSLGLETTQNLVLTDSWYWNKDATTRKWSQRYFDKMRKMPSSLQAADYSATMTYLKAVQT 325 Query: 325 VGSTDADKVMDYLRKNRINDFFTSNGVVRPDGRMVHDMYLMEVKKPSESKRPWDYYKLVQ 384 VGSTDADKVM L+K +I+DFF + G +R DG M+HDMYLM+VK P+ESK PWDYYK+ Sbjct: 326 VGSTDADKVMAQLKKQKIDDFF-AKGYIRQDGSMIHDMYLMQVKTPAESKEPWDYYKITA 384 Query: 385 TIPGEQAYMTKAESKCALWK 404 TIPGEQA+ TK E++CALWK Sbjct: 385 TIPGEQAFTTKQETRCALWK 404 >ref|ZP_01914818.1| ABC branched-chain amino acid family transporter, periplasmic ligand binding protein [Limnobacter sp. MED105] gb|EDM84134.1| ABC branched-chain amino acid family transporter, periplasmic ligand binding protein [Limnobacter sp. MED105] Length = 401 Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust. Identities = 274/395 (69%), Positives = 318/395 (80%), Gaps = 2/395 (0%) Query: 12 ATACALLGAAILPSAQA--AGDTIKIGFITDMSGTYADFDGQGGVEAIRMAIADAGGAIN 69 AT A L A + SAQA + DTIKIG ITDMSG YAD DG GGVEA++MAIAD GG +N Sbjct: 7 ATGLAALFAVVAGSAQAQISNDTIKIGVITDMSGLYADIDGPGGVEAVKMAIADFGGTLN 66 Query: 70 GKKVELVFADHQNKADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAGEKKKVFISV 129 GKK+ELVFADHQNKADIAA+KAREWFD +GVDML+ G NS +LAM KVA EK+K + Sbjct: 67 GKKIELVFADHQNKADIAASKAREWFDTEGVDMLISGTNSGTALAMAKVAEEKQKPNFVI 126 Query: 130 GAGTTRQTNEECNAYTIQYAYDTTALARGTGAAITRQGGKSWYFLTADYAFGTSLEKDTS 189 GAGT R TNEECN Y+I YAYDT ALA+GTG+A+T+QGGK+WYFLTADYAFGTSLE DT+ Sbjct: 127 GAGTARITNEECNPYSIHYAYDTVALAKGTGSAVTKQGGKTWYFLTADYAFGTSLETDTT 186 Query: 190 EVVKSNGGNVVGATRVPLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAIKAANEFGVN 249 VVK+NGG V GA R PL+ SDFSSF+LQAQ+S AQILGLA AGGD +N+IKAANEFGV Sbjct: 187 AVVKANGGTVKGAIRHPLSASDFSSFMLQAQASGAQILGLANAGGDTVNSIKAANEFGVT 246 Query: 250 KTMKLAGLLIFINDTHSLGLPLTQGMYLTDGWYWDLNDQTRAWANRYFMKMKKMPSMFQA 309 +MKLAGLL+FIND H+LGL T+GMYLTD WYWD ND+TR W+ R+F KMKKMPS QA Sbjct: 247 GSMKLAGLLMFINDVHALGLGQTKGMYLTDSWYWDQNDETRKWSKRFFDKMKKMPSSLQA 306 Query: 310 GDASAVGQYLKAVKAVGSTDADKVMDYLRKNRINDFFTSNGVVRPDGRMVHDMYLMEVKK 369 D SA QYL AVKA G+ D KVM+ LRK ++ND + NG R DG M+HDM+LM+VK Sbjct: 307 ADYSATLQYLNAVKAAGTDDGAKVMEALRKQKVNDVYAKNGYYRVDGSMIHDMFLMQVKD 366 Query: 370 PSESKRPWDYYKLVQTIPGEQAYMTKAESKCALWK 404 P ESK+PWDY K+VQ IPGEQA+ TKAE+KCALWK Sbjct: 367 PKESKKPWDYLKVVQAIPGEQAFTTKAETKCALWK 401 >ref|YP_004230013.1| extracellular ligand-binding receptor [Burkholderia sp. CCGE1001] gb|ADX56953.1| Extracellular ligand-binding receptor [Burkholderia sp. CCGE1001] Length = 404 Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust. Identities = 270/403 (66%), Positives = 327/403 (81%), Gaps = 4/403 (0%) Query: 3 PFIRRAALSATACALLGAAI-LPSAQAAGDTIKIGFITDMSGTYADFDGQGGVEAIRMAI 61 P R A++ A GAAI + SAQAA D +KIGFITDMSG YAD DGQGG+EAIRMA+ Sbjct: 5 PLARIASVCFAVAA--GAAITMSSAQAADDAVKIGFITDMSGLYADIDGQGGLEAIRMAV 62 Query: 62 ADAGGAINGKKVELVFADHQNKADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAGE 121 AD GG +NGK + +++ADHQNKADIAA++AREW DR+G+D+L+GG NSA L+M VAGE Sbjct: 63 ADFGGKVNGKPITVLYADHQNKADIAASRAREWMDREGLDLLIGGTNSATGLSMNTVAGE 122 Query: 122 KKKVFISVGAGTTRQTNEECNAYTIQYAYDTTALARGTGAAITRQGGKSWYFLTADYAFG 181 K KV+IS+GAG TNE+C YTI YAYDTTALA+GTG+A+ +QGGK+WYFLTADYAFG Sbjct: 123 KHKVYISIGAGADTLTNEQCTPYTIHYAYDTTALAKGTGSAVVKQGGKTWYFLTADYAFG 182 Query: 182 TSLEKDTSEVVKSNGGNVVGATRVPLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAIK 241 +LEK+T++VVK++GG V+G+ R PL+ SDFSSFLLQAQSSKAQ+LGLA AGGD IN+IK Sbjct: 183 KALEKNTADVVKASGGQVLGSVRHPLSASDFSSFLLQAQSSKAQVLGLANAGGDTINSIK 242 Query: 242 AANEFGVNKTMKLAGLLIFINDTHSLGLPLTQGMYLTDGWYWDLNDQTRAWANRYFMKMK 301 AA EFG+ KTMKLA LL+FIND HSLGL TQG+ LTD WYW+ + TR WA RYF KM+ Sbjct: 243 AAKEFGITKTMKLAALLMFINDVHSLGLETTQGLVLTDSWYWNKDANTRKWAQRYFDKMR 302 Query: 302 KMPSMFQAGDASAVGQYLKAVKAVGSTDADKVMDYLRKNRINDFFTSNGVVRPDGRMVHD 361 KMPS QA D SA YLKAV+AVGSTDADKVM L+K +I+DF+ + G +R DG M+HD Sbjct: 303 KMPSSLQAADYSATMNYLKAVQAVGSTDADKVMAQLKKTKIDDFY-AKGYIRQDGSMIHD 361 Query: 362 MYLMEVKKPSESKRPWDYYKLVQTIPGEQAYMTKAESKCALWK 404 MYLM+VK P+ESK PWDYYK+ TIPGEQA+ TKAE++CALWK Sbjct: 362 MYLMQVKTPAESKEPWDYYKITATIPGEQAFTTKAETRCALWK 404