BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0315.p (246 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773586.1| GTP-binding protein [Herbaspirillum seropedi... 507 e-142 ref|YP_001101365.1| ribosome biogenesis GTP-binding protein YsxC... 414 e-114 ref|YP_001355067.1| ribosome biogenesis GTP-binding protein YsxC... 409 e-112 ref|YP_004751096.1| putative GTPase [Collimonas fungivorans Ter3... 404 e-111 ref|ZP_04580024.1| GTP-binding protein EngB [Oxalobacter formige... 355 4e-96 ref|ZP_04577874.1| GTP-binding protein EngB [Oxalobacter formige... 333 2e-89 ref|YP_727888.1| ribosome biogenesis GTP-binding protein YsxC [R... 296 2e-78 ref|YP_004687177.1| GTP-binding protein EngB [Cupriavidus necato... 296 2e-78 ref|YP_297352.1| GTPase EngB [Ralstonia eutropha JMP134] >gi|119... 296 3e-78 ref|YP_002006898.1| ribosome biogenesis gtp-binding protein ysxc... 295 3e-78 >ref|YP_003773586.1| GTP-binding protein [Herbaspirillum seropedicae SmR1] gb|ADJ61678.1| GTP-binding protein [Herbaspirillum seropedicae SmR1] Length = 246 Score = 507 bits (1306), Expect = e-142, Method: Compositional matrix adjust. Identities = 243/246 (98%), Positives = 245/246 (99%) Query: 1 MSQLWQARFFTTVNHLRDLPKTSVPEIAFAGRSNAGKSSAINVLCNQKRLAFASKTPGRT 60 MSQLWQARFFTTVNHLRDLPKTSVPEIAFAGRSNAGKSSAINVLCNQKRLAFASKTPGRT Sbjct: 1 MSQLWQARFFTTVNHLRDLPKTSVPEIAFAGRSNAGKSSAINVLCNQKRLAFASKTPGRT 60 Query: 61 QHINYFSIGGAHVGQHRNDEARPDEIRAMLVDLPGYGYAEVSGSAKHHWQALLGDYVRQR 120 QHINYFSIGGAHVGQHRNDEARPDEIRAMLVDLPGYGYAEVSGSAKHHWQALLGDYVRQR Sbjct: 61 QHINYFSIGGAHVGQHRNDEARPDEIRAMLVDLPGYGYAEVSGSAKHHWQALLGDYVRQR 120 Query: 121 EQLAALVMIVDSRRPFTDLDIQMIEWFAPTGKPIHCILSKADKLNRNESTNALRQAQTYL 180 EQLAALVMIVDSRRPFTDLDIQMIEWFAPTGKPIHCILSKADKLNRNESTNALRQAQTYL Sbjct: 121 EQLAALVMIVDSRRPFTDLDIQMIEWFAPTGKPIHCILSKADKLNRNESTNALRQAQTYL 180 Query: 181 QSYVDENGQPFPFTAQLFSALKRIGLEEANDKILELAGLTAEAAPAQAATPAASVGEAAA 240 QSYVDE GQPFPFTAQLFSALKRIGLEEANDKILELAGLTAEAAPAQAATPAA+VG+AAA Sbjct: 181 QSYVDEKGQPFPFTAQLFSALKRIGLEEANDKILELAGLTAEAAPAQAATPAAAVGDAAA 240 Query: 241 DEAQQS 246 DEAQQS Sbjct: 241 DEAQQS 246 >ref|YP_001101365.1| ribosome biogenesis GTP-binding protein YsxC [Herminiimonas arsenicoxydans] sp|A4G9Q7.1|ENGB_HERAR RecName: Full=Probable GTP-binding protein EngB emb|CAL63244.1| Putative GTP-binding protein [Herminiimonas arsenicoxydans] Length = 239 Score = 414 bits (1064), Expect = e-114, Method: Compositional matrix adjust. Identities = 192/224 (85%), Positives = 206/224 (91%) Query: 1 MSQLWQARFFTTVNHLRDLPKTSVPEIAFAGRSNAGKSSAINVLCNQKRLAFASKTPGRT 60 MS LWQARFFTTVNHLRDLP T VPEIAFAGRSNAGKS+AIN+L NQK+L FASKTPGRT Sbjct: 1 MSLLWQARFFTTVNHLRDLPNTQVPEIAFAGRSNAGKSTAINILSNQKKLCFASKTPGRT 60 Query: 61 QHINYFSIGGAHVGQHRNDEARPDEIRAMLVDLPGYGYAEVSGSAKHHWQALLGDYVRQR 120 QHINYFSIGGAHVGQHR DE + +EIRAMLVDLPGYGYAEVSGSAKHHWQALLGDYV++R Sbjct: 61 QHINYFSIGGAHVGQHRKDETKVEEIRAMLVDLPGYGYAEVSGSAKHHWQALLGDYVQRR 120 Query: 121 EQLAALVMIVDSRRPFTDLDIQMIEWFAPTGKPIHCILSKADKLNRNESTNALRQAQTYL 180 EQLAALV+IVDSRRPFTDLDIQM+EWFAPTGKPIHCIL+K+DKLNRNESTNALR A T L Sbjct: 121 EQLAALVLIVDSRRPFTDLDIQMLEWFAPTGKPIHCILTKSDKLNRNESTNALRTANTLL 180 Query: 181 QSYVDENGQPFPFTAQLFSALKRIGLEEANDKILELAGLTAEAA 224 SYVDE GQPFPFTAQLFSALKR G++EANDKILEL GL E + Sbjct: 181 ASYVDEYGQPFPFTAQLFSALKRTGIDEANDKILELLGLNDEVS 224 >ref|YP_001355067.1| ribosome biogenesis GTP-binding protein YsxC [Janthinobacterium sp. Marseille] sp|A6T3H0.1|ENGB_JANMA RecName: Full=Probable GTP-binding protein EngB gb|ABR89835.1| GTP-binding protein EngB [Janthinobacterium sp. Marseille] Length = 235 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 192/234 (82%), Positives = 214/234 (91%), Gaps = 1/234 (0%) Query: 1 MSQLWQARFFTTVNHLRDLPKTSVPEIAFAGRSNAGKSSAINVLCNQKRLAFASKTPGRT 60 MS LWQARFFTTVNHLRDLPKT VPEIAFAGRSNAGKS+AIN+LCNQK+LAFASKTPGRT Sbjct: 1 MSLLWQARFFTTVNHLRDLPKTQVPEIAFAGRSNAGKSTAINILCNQKKLAFASKTPGRT 60 Query: 61 QHINYFSIGGAHVGQHRNDEARPDEIRAMLVDLPGYGYAEVSGSAKHHWQALLGDYVRQR 120 QHINYFSIGGAHVGQHR DE + DEIRA+LVDLPGYGYAEVSGSAK HWQ LLGDYV++R Sbjct: 61 QHINYFSIGGAHVGQHRKDETKVDEIRALLVDLPGYGYAEVSGSAKLHWQELLGDYVQRR 120 Query: 121 EQLAALVMIVDSRRPFTDLDIQMIEWFAPTGKPIHCILSKADKLNRNESTNALRQAQTYL 180 EQLAALV+IVDSRRPFT+LDIQM+EWFAPTGKPIHC+L+K+DKLNRN++ NALR A+T L Sbjct: 121 EQLAALVLIVDSRRPFTELDIQMLEWFAPTGKPIHCLLTKSDKLNRNDAANALRTARTIL 180 Query: 181 QSYVDENGQPFPFTAQLFSALKRIGLEEANDKILELAGLTAEAAPAQAATPAAS 234 SYVDENGQPFPFTAQ+FSALKR GL+EANDKI+EL GL EA ++ PAA+ Sbjct: 181 GSYVDENGQPFPFTAQMFSALKRSGLDEANDKIIELLGLN-EAPQEESNGPAAN 233 >ref|YP_004751096.1| putative GTPase [Collimonas fungivorans Ter331] gb|AEK60273.1| putative GTPase with nucleoside triP hydrolase domain, involved in coordination of cell cycle [Collimonas fungivorans Ter331] Length = 329 Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust. Identities = 194/237 (81%), Positives = 211/237 (89%), Gaps = 1/237 (0%) Query: 1 MSQLWQARFFTTVNHLRDLPKTSVPEIAFAGRSNAGKSSAINVLCNQKRLAFASKTPGRT 60 MS LWQARFFTTVNHLRDLP VPEIAFAGRSNAGKS+AIN+LCNQK+LAFASKTPGRT Sbjct: 91 MSLLWQARFFTTVNHLRDLPTLQVPEIAFAGRSNAGKSTAINLLCNQKKLAFASKTPGRT 150 Query: 61 QHINYFSIGGAHVGQHRNDEARPDEIRAMLVDLPGYGYAEVSGSAKHHWQALLGDYVRQR 120 QHINYFSIGGAHV QHR DE + DEIRA+LVDLPGYGYAEVSGSAK HWQ LLGDYVR+R Sbjct: 151 QHINYFSIGGAHVAQHRKDETKIDEIRALLVDLPGYGYAEVSGSAKLHWQQLLGDYVRRR 210 Query: 121 EQLAALVMIVDSRRPFTDLDIQMIEWFAPTGKPIHCILSKADKLNRNESTNALRQAQTYL 180 +QLAALV+IVDSRRPFT+LD+QM+EWFAPTGKPIHCILSK+DKLNRN++TNALRQA+T+L Sbjct: 211 QQLAALVLIVDSRRPFTELDVQMVEWFAPTGKPIHCILSKSDKLNRNDATNALRQARTFL 270 Query: 181 QSYVDENGQPFPFTAQLFSALKRIGLEEANDKILELAGLTAEAAPAQAATPAASVGE 237 SYVDEN Q PFTAQLFSAL R GLEEAND+ILELAGLT A AT AA GE Sbjct: 271 ASYVDENNQQLPFTAQLFSALNRSGLEEANDRILELAGLTDAAGDMPDAT-AAGAGE 326 >ref|ZP_04580024.1| GTP-binding protein EngB [Oxalobacter formigenes OXCC13] gb|EEO30997.1| GTP-binding protein EngB [Oxalobacter formigenes OXCC13] Length = 231 Score = 355 bits (910), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 160/218 (73%), Positives = 186/218 (85%) Query: 1 MSQLWQARFFTTVNHLRDLPKTSVPEIAFAGRSNAGKSSAINVLCNQKRLAFASKTPGRT 60 MS+LWQARF+ TVNHLRDLPK VPE+AF GRSNAGKSSAIN LCNQK LAFASKTPGRT Sbjct: 1 MSKLWQARFYKTVNHLRDLPKLDVPEVAFVGRSNAGKSSAINTLCNQKSLAFASKTPGRT 60 Query: 61 QHINYFSIGGAHVGQHRNDEARPDEIRAMLVDLPGYGYAEVSGSAKHHWQALLGDYVRQR 120 QHIN+FSIGGAHVGQHR+D R EI LVDLPGYG+A+VSGSAK HWQ LL DY+ R Sbjct: 61 QHINFFSIGGAHVGQHRHDPVRESEIDMFLVDLPGYGFAQVSGSAKEHWQKLLSDYLIHR 120 Query: 121 EQLAALVMIVDSRRPFTDLDIQMIEWFAPTGKPIHCILSKADKLNRNESTNALRQAQTYL 180 +QL LV+++D+R PF LD+Q++EWFA TGKP+HC+L+KADKLNR+ESTNAL+Q T L Sbjct: 121 QQLTGLVLVMDARHPFQPLDVQLLEWFAVTGKPVHCLLTKADKLNRSESTNALKQVDTIL 180 Query: 181 QSYVDENGQPFPFTAQLFSALKRIGLEEANDKILELAG 218 +SYVDE G PFPFTAQLFS+ KRIG++EA D IL+LAG Sbjct: 181 KSYVDEEGNPFPFTAQLFSSTKRIGIKEATDTILQLAG 218 >ref|ZP_04577874.1| GTP-binding protein EngB [Oxalobacter formigenes HOxBLS] gb|EEO28836.1| GTP-binding protein EngB [Oxalobacter formigenes HOxBLS] Length = 237 Score = 333 bits (853), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 150/226 (66%), Positives = 181/226 (80%) Query: 1 MSQLWQARFFTTVNHLRDLPKTSVPEIAFAGRSNAGKSSAINVLCNQKRLAFASKTPGRT 60 MS+LWQARFF T NHLRDLP+ +VPEIAF GRSNAGKSSAIN LCNQK LA+AS+TPGRT Sbjct: 12 MSKLWQARFFRTANHLRDLPRLNVPEIAFVGRSNAGKSSAINTLCNQKNLAYASRTPGRT 71 Query: 61 QHINYFSIGGAHVGQHRNDEARPDEIRAMLVDLPGYGYAEVSGSAKHHWQALLGDYVRQR 120 QHIN+FSIGGAHV QHR+D +++ LVDLPGYGYA++SG+AK HWQ LL DY+ R Sbjct: 72 QHINFFSIGGAHVAQHRHDPVDENKVELFLVDLPGYGYAQISGTAKEHWQKLLSDYLITR 131 Query: 121 EQLAALVMIVDSRRPFTDLDIQMIEWFAPTGKPIHCILSKADKLNRNESTNALRQAQTYL 180 QL+ L++++DSR PF LD+ ++EWFA TGKPIHC+L+KADKLNR ES+ AL+Q T L Sbjct: 132 PQLSGLILVMDSRHPFQPLDVSLLEWFAVTGKPIHCLLTKADKLNRRESSEALKQVDTIL 191 Query: 181 QSYVDENGQPFPFTAQLFSALKRIGLEEANDKILELAGLTAEAAPA 226 +SY+DENG PFPF+AQLFS+ KR GL+EA IL LAG P Sbjct: 192 RSYIDENGHPFPFSAQLFSSTKRTGLKEATAFILNLAGQPENTDPV 237 >ref|YP_727888.1| ribosome biogenesis GTP-binding protein YsxC [Ralstonia eutropha H16] sp|Q0K651.1|ENGB_CUPNH RecName: Full=Probable GTP-binding protein EngB emb|CAJ94520.1| Predicted GTPase [Ralstonia eutropha H16] Length = 233 Score = 296 bits (759), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 147/244 (60%), Positives = 180/244 (73%), Gaps = 11/244 (4%) Query: 1 MSQLWQARFFTTVNHLRDLPKTSVPEIAFAGRSNAGKSSAINVLCNQKRLAFASKTPGRT 60 MS L QARFF TVNHLRDLP T+VPE+AFAGRSNAGKS+AIN+LCNQKRLAF+S+TPGRT Sbjct: 1 MSLLHQARFFITVNHLRDLPATAVPEVAFAGRSNAGKSTAINILCNQKRLAFSSRTPGRT 60 Query: 61 QHINYFSIGGAHVGQHRNDEARPDEIRAMLVDLPGYGYAEVSGSAKHHWQALLGDYVRQR 120 QHINYFS+ PD + A LVDLPGYGYAEVSGSAK+HWQ LL DYV+ R Sbjct: 61 QHINYFSVAPVKA---------PDPL-AFLVDLPGYGYAEVSGSAKYHWQGLLSDYVQTR 110 Query: 121 EQLAALVMIVDSRRPFTDLDIQMIEWFAPTGKPIHCILSKADKLNRNESTNALRQAQTYL 180 +QL+ L++++D+RRPFTDLD QM+EWF PTG+PIH +L+KADKL +++ ALR+ + L Sbjct: 111 QQLSGLILMMDARRPFTDLDCQMVEWFLPTGRPIHVLLTKADKLTNSDNAKALRETRKML 170 Query: 181 QSYVDENGQPFPFTAQLFSALKRIGLEEANDKILELAGLTAEAAPAQAATPAASVGEAAA 240 Q Y ++ P P TAQLFS+LKR G+EEA I L EA A+A + A AA Sbjct: 171 QGYAEQMETPVPMTAQLFSSLKRRGIEEAQGVIAGWLNL-PEAQKAEARSAAEKSEPPAA 229 Query: 241 DEAQ 244 D A+ Sbjct: 230 DPAE 233 >ref|YP_004687177.1| GTP-binding protein EngB [Cupriavidus necator N-1] gb|AEI78696.1| GTP-binding protein EngB [Cupriavidus necator N-1] Length = 233 Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 146/243 (60%), Positives = 180/243 (74%), Gaps = 11/243 (4%) Query: 1 MSQLWQARFFTTVNHLRDLPKTSVPEIAFAGRSNAGKSSAINVLCNQKRLAFASKTPGRT 60 MS L QARFF TVNHLRDLP T+VPE+AFAGRSNAGKS+AIN+LCNQKRLAF+S+TPGRT Sbjct: 1 MSLLHQARFFITVNHLRDLPATAVPEVAFAGRSNAGKSTAINILCNQKRLAFSSRTPGRT 60 Query: 61 QHINYFSIGGAHVGQHRNDEARPDEIRAMLVDLPGYGYAEVSGSAKHHWQALLGDYVRQR 120 QHINYFS+ PD + A LVDLPGYGYAEVSG+AK+HWQ LL DYV+ R Sbjct: 61 QHINYFSVAPVKA---------PDPL-AFLVDLPGYGYAEVSGTAKYHWQGLLSDYVQTR 110 Query: 121 EQLAALVMIVDSRRPFTDLDIQMIEWFAPTGKPIHCILSKADKLNRNESTNALRQAQTYL 180 +QL+ L++++D+RRPFTDLD QM+EWF PTG+PIH +L+KADKL +++ ALR+ + L Sbjct: 111 QQLSGLILMMDARRPFTDLDCQMVEWFLPTGRPIHVLLTKADKLTNSDNAKALRETRKML 170 Query: 181 QSYVDENGQPFPFTAQLFSALKRIGLEEANDKILELAGLTAEAAPAQAATPAASVGEAAA 240 Q Y ++ P P TAQLFS+LKR G+EEA I L EA A+A + A + AA Sbjct: 171 QGYAEQMETPVPMTAQLFSSLKRRGIEEAQGVIAGWLNL-PEAQKAEAKSAAETSEPPAA 229 Query: 241 DEA 243 D A Sbjct: 230 DPA 232 >ref|YP_297352.1| GTPase EngB [Ralstonia eutropha JMP134] sp|Q46WH5.1|ENGB_CUPPJ RecName: Full=Probable GTP-binding protein EngB gb|AAZ62508.1| cell division checkpoint GTPase YihA [Ralstonia eutropha JMP134] Length = 228 Score = 296 bits (757), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 138/213 (64%), Positives = 167/213 (78%), Gaps = 10/213 (4%) Query: 1 MSQLWQARFFTTVNHLRDLPKTSVPEIAFAGRSNAGKSSAINVLCNQKRLAFASKTPGRT 60 MS L QARFFTTVNHLRDLP T+VPE+AFAGRSNAGKS+AIN+LCNQKRLAF+S+TPGRT Sbjct: 1 MSLLHQARFFTTVNHLRDLPATAVPEVAFAGRSNAGKSTAINILCNQKRLAFSSRTPGRT 60 Query: 61 QHINYFSIGGAHVGQHRNDEARPDEIRAMLVDLPGYGYAEVSGSAKHHWQALLGDYVRQR 120 QHINYF++ PD I A LVDLPGYGYAEVSGSAK+HWQ LL DYV+ R Sbjct: 61 QHINYFTVAPVKA---------PDPI-AFLVDLPGYGYAEVSGSAKYHWQGLLSDYVQTR 110 Query: 121 EQLAALVMIVDSRRPFTDLDIQMIEWFAPTGKPIHCILSKADKLNRNESTNALRQAQTYL 180 QL+ L++++D+RRPFTDLD QM+EWF PTGKP+H +L+KADKL +E+ ALR+ + L Sbjct: 111 SQLSGLILMMDARRPFTDLDCQMVEWFLPTGKPVHVLLTKADKLTNSENAKALRETRKML 170 Query: 181 QSYVDENGQPFPFTAQLFSALKRIGLEEANDKI 213 + Y ++ P P TAQLFS+LKR G+EEA I Sbjct: 171 EGYAEQLATPVPLTAQLFSSLKRRGIEEAQRVI 203 >ref|YP_002006898.1| ribosome biogenesis gtp-binding protein ysxc [Cupriavidus taiwanensis LMG 19424] sp|B3R7D7.1|ENGB_CUPTR RecName: Full=Probable GTP-binding protein EngB emb|CAQ70837.1| GTPase binding protein, involved in coordination of cell cycle [Cupriavidus taiwanensis LMG 19424] Length = 237 Score = 295 bits (756), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 139/213 (65%), Positives = 167/213 (78%), Gaps = 10/213 (4%) Query: 1 MSQLWQARFFTTVNHLRDLPKTSVPEIAFAGRSNAGKSSAINVLCNQKRLAFASKTPGRT 60 MS L QARFF TVNHLRDLP T+VPE+AFAGRSNAGKS+AIN+LCNQKRLAF+S+TPGRT Sbjct: 1 MSLLHQARFFITVNHLRDLPATAVPEVAFAGRSNAGKSTAINILCNQKRLAFSSRTPGRT 60 Query: 61 QHINYFSIGGAHVGQHRNDEARPDEIRAMLVDLPGYGYAEVSGSAKHHWQALLGDYVRQR 120 QHINYFS+ PD + A LVDLPGYGYAEVSGSAK+HWQ LL DYV+ R Sbjct: 61 QHINYFSVAPVKA---------PDPL-AFLVDLPGYGYAEVSGSAKYHWQGLLSDYVQTR 110 Query: 121 EQLAALVMIVDSRRPFTDLDIQMIEWFAPTGKPIHCILSKADKLNRNESTNALRQAQTYL 180 +QLA L++++D+RRPFTDLD QM+EWF PTG+PIH +L+KADKL +E+ ALR+ + L Sbjct: 111 QQLAGLILMMDARRPFTDLDCQMVEWFLPTGRPIHVLLTKADKLTNSENAKALRETRKML 170 Query: 181 QSYVDENGQPFPFTAQLFSALKRIGLEEANDKI 213 Q Y ++ P P TAQLFS+LKR G+EEA I Sbjct: 171 QGYAEQLETPVPMTAQLFSSLKRRGIEEAQAVI 203