BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0253.p (215 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773676.1| amino acid ABC transporter permease [Herbasp... 425 e-117 gb|EGP48469.1| amino acid ABC transporter permease [Achromobacte... 282 3e-74 gb|AEJ29197.1| polar amino acid ABC transporter inner membrane s... 278 4e-73 gb|EFV84586.1| amino acid ABC transporter permease [Achromobacte... 275 4e-72 ref|YP_003962780.1| polar amino acid ABC transporter inner membr... 239 3e-61 ref|YP_001768634.1| polar amino acid ABC transporter inner membr... 231 5e-59 ref|YP_003774920.1| amino acid ABC transporter permease [Herbasp... 228 6e-58 ref|YP_003777259.1| amino acid ABC transporter permease [Herbasp... 223 1e-56 ref|YP_001525533.1| amino acid ABC transporter permease [Azorhiz... 223 2e-56 ref|YP_918681.1| polar amino acid ABC transporter, inner membran... 222 3e-56 >ref|YP_003773676.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ61768.1| ABC-type amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 215 Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust. Identities = 213/215 (99%), Positives = 213/215 (99%) Query: 1 MSEEQLLSLLQGAWGTVLLSGLTLLLGGMAGLALALARVSALRPLRRLAAAWIQLIQGTP 60 MSEEQLLSLLQGAWGTVLLSGLTLLLGGMAGLALALARVSALRPLRRLAAAWIQLIQGTP Sbjct: 1 MSEEQLLSLLQGAWGTVLLSGLTLLLGGMAGLALALARVSALRPLRRLAAAWIQLIQGTP 60 Query: 61 LLVLMGVCFYGPALAGVGTVEVLPAAATAMLIYASAFLGEIWRGCIQSVHKSQWEAAECI 120 LLVLMGVCFYGPALAGVGTVE LPAAATAMLIY SAFLGEIWRGCIQSVHKSQWEAAECI Sbjct: 61 LLVLMGVCFYGPALAGVGTVEALPAAATAMLIYTSAFLGEIWRGCIQSVHKSQWEAAECI 120 Query: 121 GLSRWQRMRMIVLPQALRMATPPTVGFAVQVIKNTSVASLVIGFAELSYNAKVLNNSTFQ 180 GLSRWQRMRMIVLPQALRMATPPTVGFAVQVIKNTSVASLVIGFAELSYNAKVLNNSTFQ Sbjct: 121 GLSRWQRMRMIVLPQALRMATPPTVGFAVQVIKNTSVASLVIGFAELSYNAKVLNNSTFQ 180 Query: 181 PFLYFGSAALLYFAMCYPLSRWSRALERKLHAHRR 215 PFLYFGSAALLYFAMCYPLSRWSRALERKLHAHRR Sbjct: 181 PFLYFGSAALLYFAMCYPLSRWSRALERKLHAHRR 215 >gb|EGP48469.1| amino acid ABC transporter permease [Achromobacter xylosoxidans AXX-A] Length = 219 Score = 282 bits (721), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 152/215 (70%), Positives = 179/215 (83%) Query: 1 MSEEQLLSLLQGAWGTVLLSGLTLLLGGMAGLALALARVSALRPLRRLAAAWIQLIQGTP 60 + E+ L++GAWGTV LS T GG+AGL LALARVS R LR AA +IQ+IQGTP Sbjct: 5 IPEQHAWYLVEGAWGTVKLSAWTFAGGGLAGLLLALARVSPRRALRAAAAGYIQVIQGTP 64 Query: 61 LLVLMGVCFYGPALAGVGTVEVLPAAATAMLIYASAFLGEIWRGCIQSVHKSQWEAAECI 120 LLVLMG+CF+GP+L G+G + L AA AM IY+SAFLGEIWRGCIQ+V K+QWEAAEC+ Sbjct: 65 LLVLMGLCFFGPSLFGLGELSALAAAGVAMTIYSSAFLGEIWRGCIQAVPKNQWEAAECL 124 Query: 121 GLSRWQRMRMIVLPQALRMATPPTVGFAVQVIKNTSVASLVIGFAELSYNAKVLNNSTFQ 180 GLSR QRM +VLPQALR+ATPPTVGF VQ+IKNTS+ASLVIG+ EL+YNAK+LNNSTFQ Sbjct: 125 GLSRLQRMAKVVLPQALRIATPPTVGFLVQIIKNTSIASLVIGYPELAYNAKILNNSTFQ 184 Query: 181 PFLYFGSAALLYFAMCYPLSRWSRALERKLHAHRR 215 PF+YFG AA+LYF MCYPLSRWSR LER+L+A RR Sbjct: 185 PFVYFGCAAVLYFLMCYPLSRWSRTLERRLNASRR 219 >gb|AEJ29197.1| polar amino acid ABC transporter inner membrane subunit [Paracoccus denitrificans SD1] Length = 215 Score = 278 bits (711), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 134/215 (62%), Positives = 170/215 (79%) Query: 1 MSEEQLLSLLQGAWGTVLLSGLTLLLGGMAGLALALARVSALRPLRRLAAAWIQLIQGTP 60 M+ L+SLL G GTV+LS LT + GG+AG ALALARVS L+PLR A + Q++QG P Sbjct: 1 MNTVFLISLLYGLLGTVILSALTFIFGGLAGFALALARVSPLKPLRVTAQLYTQIVQGVP 60 Query: 61 LLVLMGVCFYGPALAGVGTVEVLPAAATAMLIYASAFLGEIWRGCIQSVHKSQWEAAECI 120 LLVLMG+C++GP LAG V L AA AM +AS++LGE+W G + SV ++QWEAAEC+ Sbjct: 61 LLVLMGLCYFGPILAGYSAVPPLVAATMAMTFFASSYLGEMWYGALISVARAQWEAAECL 120 Query: 121 GLSRWQRMRMIVLPQALRMATPPTVGFAVQVIKNTSVASLVIGFAELSYNAKVLNNSTFQ 180 GLSRWQRM +VLPQALR+A PPTVGF V ++KNTSV+SLV+G++EL+YNAKV+NN+TFQ Sbjct: 121 GLSRWQRMTRVVLPQALRIAIPPTVGFMVIIVKNTSVSSLVVGYSELTYNAKVINNATFQ 180 Query: 181 PFLYFGSAALLYFAMCYPLSRWSRALERKLHAHRR 215 PFLYFG A LLYF +CYPLS +R++ERKL+ R Sbjct: 181 PFLYFGLAGLLYFLICYPLSLKARSMERKLNVANR 215 >gb|EFV84586.1| amino acid ABC transporter permease [Achromobacter xylosoxidans C54] Length = 219 Score = 275 bits (702), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 152/215 (70%), Positives = 180/215 (83%) Query: 1 MSEEQLLSLLQGAWGTVLLSGLTLLLGGMAGLALALARVSALRPLRRLAAAWIQLIQGTP 60 + E+ L++GAWGTV LS T GG+AGL LALARVS R LR AA +IQ+IQGTP Sbjct: 5 IPEQHAWYLVEGAWGTVKLSAWTFAGGGLAGLLLALARVSPRRALRAAAAGYIQVIQGTP 64 Query: 61 LLVLMGVCFYGPALAGVGTVEVLPAAATAMLIYASAFLGEIWRGCIQSVHKSQWEAAECI 120 LLVLMG+CF+GP+L G+G + L AA AM IY+SAFLGEIWRGCIQ+V K+QWEAAEC+ Sbjct: 65 LLVLMGLCFFGPSLFGLGELSALAAAGLAMTIYSSAFLGEIWRGCIQAVPKNQWEAAECL 124 Query: 121 GLSRWQRMRMIVLPQALRMATPPTVGFAVQVIKNTSVASLVIGFAELSYNAKVLNNSTFQ 180 GLSR QRM +VLPQALR+ATPPTVGF VQ+IKNTS+ASLVIG+ EL+YNAK+LNNSTFQ Sbjct: 125 GLSRLQRMAKVVLPQALRIATPPTVGFLVQIIKNTSIASLVIGYPELAYNAKILNNSTFQ 184 Query: 181 PFLYFGSAALLYFAMCYPLSRWSRALERKLHAHRR 215 PF+YFG AA+LYF MCYPLSRWSR+LER+L+A RR Sbjct: 185 PFVYFGCAAILYFLMCYPLSRWSRSLERRLNASRR 219 >ref|YP_003962780.1| polar amino acid ABC transporter inner membrane protein [Ketogulonicigenium vulgare Y25] gb|ADO41480.1| polar amino acid ABC transporter, inner membrane subunit [Ketogulonicigenium vulgare Y25] gb|AEM42334.1| Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family protein [Ketogulonigenium vulgarum WSH-001] Length = 216 Score = 239 bits (609), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 122/211 (57%), Positives = 162/211 (76%), Gaps = 2/211 (0%) Query: 5 QLLSLLQGAWGTVLLSGLTLLLGGMAGLALALARVSALRPLRRLAAAWIQLIQGTPLLVL 64 + LL G W T++LS L + LG +AG + L R+S + L RL+ W+Q+IQGTPLL+ Sbjct: 8 HFIYLLNGLWWTIILSALAMSLGSIAGFIVMLGRISRRKWLVRLSGTWVQIIQGTPLLIQ 67 Query: 65 MGVCFYGPALAGVGTVEVLPAAATAMLIYASAFLGEIWRGCIQSVHKSQWEAAECIGLSR 124 M + ++G + G+ +V L AAA A +IYASA+LGEIWRGC+QS+ K+Q+EAAE +GL+R Sbjct: 68 MFIIYFGLGVVGI-SVPALAAAAIATMIYASAYLGEIWRGCVQSIAKTQFEAAESMGLTR 126 Query: 125 WQRMRMIVLPQALRMATPPTVGFAVQVIKNTSVASLVIGFAELSYNAKVLNNSTFQPFLY 184 WQ +R ++LPQA+R+ATPPTVGF VQ+IKNTS+AS V+GF EL+ A+V+NNS F+PFL Sbjct: 127 WQALRDVILPQAMRIATPPTVGFTVQLIKNTSLAS-VVGFLELTRAAQVINNSLFEPFLV 185 Query: 185 FGSAALLYFAMCYPLSRWSRALERKLHAHRR 215 FG AA LYFA+CYPLS WSR LERKL+ RR Sbjct: 186 FGIAAALYFAVCYPLSLWSRNLERKLNVGRR 216 >ref|YP_001768634.1| polar amino acid ABC transporter inner membrane subunit [Methylobacterium sp. 4-46] gb|ACA16200.1| polar amino acid ABC transporter, inner membrane subunit [Methylobacterium sp. 4-46] Length = 219 Score = 231 bits (589), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 118/215 (54%), Positives = 160/215 (74%), Gaps = 2/215 (0%) Query: 1 MSEEQLLSLLQGAWGTVLLSGLTLLLGGMAGLALALARVSALRPLRRLAAAWIQLIQGTP 60 S L+ LL+G TV+L+ L LLG +AG + L R++ R +RRLA A++Q+IQG P Sbjct: 4 FSLNHLVFLLEGVGWTVVLTALAFLLGSLAGFGVMLLRIARARWVRRLAFAYVQVIQGLP 63 Query: 61 LLVLMGVCFYGPALAGVGTVEVLPAAATAMLIYASAFLGEIWRGCIQSVHKSQWEAAECI 120 LL+L+ ++G + GV + L AAA ++++Y SAFLGEIWRGC+++V ++Q EAAEC+ Sbjct: 64 LLILLFCVYFGLGVIGV-ELSPLVAAAISLMVYCSAFLGEIWRGCVEAVPRTQGEAAECL 122 Query: 121 GLSRWQRMRMIVLPQALRMATPPTVGFAVQVIKNTSVASLVIGFAELSYNAKVLNNSTFQ 180 LSRWQ + ++LPQA R+A PPTVGF VQV+K+TS+AS V+GF EL+ ++++NNS FQ Sbjct: 123 ALSRWQALVDVILPQAARIAVPPTVGFFVQVLKSTSLAS-VVGFVELTRASQLINNSIFQ 181 Query: 181 PFLYFGSAALLYFAMCYPLSRWSRALERKLHAHRR 215 PFL FG A LYFA+CYPLSRWSR LERKLH RR Sbjct: 182 PFLVFGLAGALYFALCYPLSRWSRRLERKLHVGRR 216 >ref|YP_003774920.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ63012.1| ABC-type amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 216 Score = 228 bits (580), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 114/214 (53%), Positives = 157/214 (73%), Gaps = 2/214 (0%) Query: 1 MSEEQLLSLLQGAWGTVLLSGLTLLLGGMAGLALALARVSALRPLRRLAAAWIQLIQGTP 60 S + + LL+ A T+LLS L L GG+AG +AL R S L PLR L+A +IQ+IQGTP Sbjct: 5 FSFDNFVFLLEAARWTLLLSALAFLGGGIAGFIVALMRTSHLAPLRLLSAVYIQIIQGTP 64 Query: 61 LLVLMGVCFYGPALAGVGTVEVLPAAATAMLIYASAFLGEIWRGCIQSVHKSQWEAAECI 120 +L+L+ + FYG A+ G ++ AA AM IY+SA+LGEIWRGCI++V QWEA+ + Sbjct: 65 VLILLFLSFYGLAIFGYKLPPMV-AATIAMTIYSSAYLGEIWRGCIEAVPVPQWEASTAL 123 Query: 121 GLSRWQRMRMIVLPQALRMATPPTVGFAVQVIKNTSVASLVIGFAELSYNAKVLNNSTFQ 180 ++RWQ++R ++LPQA+R++ PPTVGF VQ++KNTS+AS +IG EL+ K+++N+TFQ Sbjct: 124 AMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIAS-IIGLVELAQAGKLVSNATFQ 182 Query: 181 PFLYFGSAALLYFAMCYPLSRWSRALERKLHAHR 214 PFL F A +YF CYPLSR++ ALERK HAHR Sbjct: 183 PFLVFPIVAGIYFVFCYPLSRFAFALERKYHAHR 216 >ref|YP_003777259.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65351.1| ABC-type amino acid transport system, permease protein [Herbaspirillum seropedicae SmR1] Length = 216 Score = 223 bits (568), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 110/207 (53%), Positives = 154/207 (74%), Gaps = 2/207 (0%) Query: 9 LLQGAWGTVLLSGLTLLLGGMAGLALALARVSALRPLRRLAAAWIQLIQGTPLLVLMGVC 68 LLQ A TV+LS + + GG+AG +AL RVS LR +A+ +IQ++QG PLLV++ V Sbjct: 12 LLQAAVWTVVLSLVAFVFGGVAGFVIALWRVSPNAVLRGIASGYIQVVQGIPLLVILFVA 71 Query: 69 FYGPALAGVGTVEVLPAAATAMLIYASAFLGEIWRGCIQSVHKSQWEAAECIGLSRWQRM 128 ++G A+AG + L AA + IY +AFLGEIWRGCIQ+V K+QWEA+EC+G +R++++ Sbjct: 72 YFGLAIAGF-KLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASECLGFNRFEQL 130 Query: 129 RMIVLPQALRMATPPTVGFAVQVIKNTSVASLVIGFAELSYNAKVLNNSTFQPFLYFGSA 188 ++LPQA+++ATPPTVGF VQ++KNTS+AS VIGF +LS +++NNSTFQPF FG Sbjct: 131 TKVILPQAVKIATPPTVGFMVQIVKNTSLAS-VIGFVDLSRAGQIINNSTFQPFTVFGCV 189 Query: 189 ALLYFAMCYPLSRWSRALERKLHAHRR 215 AL+YF +C+PLS S+ ERKL+ R Sbjct: 190 ALIYFCLCFPLSALSKHFERKLNVSHR 216 >ref|YP_001525533.1| amino acid ABC transporter permease [Azorhizobium caulinodans ORS 571] dbj|BAF88615.1| amino acid ABC transporter, permease protein [Azorhizobium caulinodans ORS 571] Length = 219 Score = 223 bits (567), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 113/208 (54%), Positives = 155/208 (74%), Gaps = 2/208 (0%) Query: 4 EQLLSLLQGAWGTVLLSGLTLLLGGMAGLALALARVSALRPLRRLAAAWIQLIQGTPLLV 63 + LL+ T++L+ + L LGG+AGL +ALARVS L PLR AA+IQ+IQG+P+L+ Sbjct: 9 NDFIFLLESLRWTLVLTAIALTLGGIAGLFIALARVSPLMPLRLATAAYIQIIQGSPVLM 68 Query: 64 LMGVCFYGPALAGVGTVEVLPAAATAMLIYASAFLGEIWRGCIQSVHKSQWEAAECIGLS 123 ++ + +YG +L G + L AA+ +M IY S +LG+IWRGCI++V K QWEA+EC+G++ Sbjct: 69 ILFLSYYGLSLIGF-QLPALVAASISMSIYVSGYLGDIWRGCIEAVPKPQWEASECLGMT 127 Query: 124 RWQRMRMIVLPQALRMATPPTVGFAVQVIKNTSVASLVIGFAELSYNAKVLNNSTFQPFL 183 R Q+ R I+LPQALR+A PPT GFAVQV+KNTS+ S +IGF ELS +++NNSTFQPF Sbjct: 128 RVQQFRHIILPQALRIALPPTTGFAVQVVKNTSITS-IIGFVELSRAGQLINNSTFQPFR 186 Query: 184 YFGSAALLYFAMCYPLSRWSRALERKLH 211 F + A +YF +CYPLSR S LERKL+ Sbjct: 187 VFLTVAAIYFVICYPLSRLSGWLERKLN 214 >ref|YP_918681.1| polar amino acid ABC transporter, inner membrane subunit [Paracoccus denitrificans PD1222] gb|ABL72985.1| amino acid ABC transporter membrane protein 2, PAAT family [Paracoccus denitrificans PD1222] Length = 214 Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 116/215 (53%), Positives = 157/215 (73%), Gaps = 3/215 (1%) Query: 1 MSEEQLLSLLQGAWGTVLLSGLTLLLGGMAGLALALARVSALRPLRRLAAAWIQLIQGTP 60 ++ Q+ +LL A T LS + +LGG GL +A+ RVSA R LR +A +IQ++QGTP Sbjct: 2 LTTFQMQALLTAAVWTAGLSLIAFVLGGAVGLLIAVMRVSANRVLRGIAFTYIQIVQGTP 61 Query: 61 LLVLMGVCFYGPALAGVGTVEVLPAAATAMLIYASAFLGEIWRGCIQSVHKSQWEAAECI 120 LLV+M + F+G ++ G AA+ AM+IY+SA+ GEIWRG I +V K+QWEAAEC+ Sbjct: 62 LLVMMMLAFFGLSILGFDLTP-FAAASFAMVIYSSAYFGEIWRGGILAVPKTQWEAAECL 120 Query: 121 GLSRWQRMRMIVLPQALRMATPPTVGFAVQVIKNTSVASLVIGFAELSYNAKVLNNSTFQ 180 L QR ++++PQ LR++TPPTVGF VQ++KNTS+AS VIG AEL+Y +K++NNSTFQ Sbjct: 121 ALHPVQRFWLVIIPQGLRISTPPTVGFMVQIVKNTSLAS-VIGVAELTYTSKLINNSTFQ 179 Query: 181 PFLYFGSAALLYFAMCYPLSRWSRALERKLH-AHR 214 PF+ F A+LYF MCYPL+ WSR LE KL+ AHR Sbjct: 180 PFIIFSVVAVLYFCMCYPLAWWSRKLEDKLNVAHR 214