BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0252.p (227 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773677.1| amino acid ABC transporter permease [Herbasp... 452 e-125 gb|EGP48468.1| amino acid ABC transporter permease [Achromobacte... 357 6e-97 gb|EFV84587.1| polar amino acid ABC transporter [Achromobacter x... 357 9e-97 gb|AEJ29196.1| polar amino acid ABC transporter inner membrane s... 291 5e-77 ref|YP_001415090.1| polar amino acid ABC transporter inner membr... 276 2e-72 ref|YP_001526199.1| amino acid ABC transporter permease [Azorhiz... 268 4e-70 ref|YP_003777258.1| amino acid ABC transporter permease [Herbasp... 266 2e-69 ref|YP_982304.1| polar amino acid ABC transporter inner membrane... 263 2e-68 ref|YP_003962779.1| polar amino acid ABC transporter inner membr... 261 4e-68 ref|YP_001769970.1| polar amino acid ABC transporter inner membr... 249 2e-64 >ref|YP_003773677.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ61769.1| ABC-type amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 227 Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust. Identities = 227/227 (100%), Positives = 227/227 (100%) Query: 1 MHYEFDFASVAAHWPLLLQGAWTTVQLSFLATLLGFVLGAACAVARGSRHGWLRAAVSGY 60 MHYEFDFASVAAHWPLLLQGAWTTVQLSFLATLLGFVLGAACAVARGSRHGWLRAAVSGY Sbjct: 1 MHYEFDFASVAAHWPLLLQGAWTTVQLSFLATLLGFVLGAACAVARGSRHGWLRAAVSGY 60 Query: 61 VELIRNTPLLIQCYFLIFGLSSVGVTMPIMAGATLALVINIGAYSCEIVRAGLESIHHGQ 120 VELIRNTPLLIQCYFLIFGLSSVGVTMPIMAGATLALVINIGAYSCEIVRAGLESIHHGQ Sbjct: 61 VELIRNTPLLIQCYFLIFGLSSVGVTMPIMAGATLALVINIGAYSCEIVRAGLESIHHGQ 120 Query: 121 LEAASCLGLSPAQVFWHVVLLPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV 180 LEAASCLGLSPAQVFWHVVLLPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV Sbjct: 121 LEAASCLGLSPAQVFWHVVLLPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV 180 Query: 181 QSDTFRNFEVFLLLWAAYLALACLMRAGFWLLGQLVFTRRRKLGTPL 227 QSDTFRNFEVFLLLWAAYLALACLMRAGFWLLGQLVFTRRRKLGTPL Sbjct: 181 QSDTFRNFEVFLLLWAAYLALACLMRAGFWLLGQLVFTRRRKLGTPL 227 >gb|EGP48468.1| amino acid ABC transporter permease [Achromobacter xylosoxidans AXX-A] Length = 227 Score = 357 bits (917), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 177/227 (77%), Positives = 195/227 (85%) Query: 1 MHYEFDFASVAAHWPLLLQGAWTTVQLSFLATLLGFVLGAACAVARGSRHGWLRAAVSGY 60 M+Y FDFASV WPLL QGAW TV+LSF AT+LGF+LG CA+AR SR GWLRA GY Sbjct: 1 MNYTFDFASVLEQWPLLAQGAWVTVKLSFCATVLGFILGTLCALARNSRLGWLRALAGGY 60 Query: 61 VELIRNTPLLIQCYFLIFGLSSVGVTMPIMAGATLALVINIGAYSCEIVRAGLESIHHGQ 120 VELIRNTPLLIQ YFLIFGLSS G+TMPIMAGA LALVINIGAY+CEIVRAG+ESI Q Sbjct: 61 VELIRNTPLLIQAYFLIFGLSSAGLTMPIMAGAVLALVINIGAYTCEIVRAGIESIPKDQ 120 Query: 121 LEAASCLGLSPAQVFWHVVLLPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV 180 LEA CL LS QVFWHVVL PAVERV+P+LTSQFVL+MLASSI+S+VGAEELLGVANR+ Sbjct: 121 LEAGECLALSRLQVFWHVVLRPAVERVYPSLTSQFVLLMLASSIMSAVGAEELLGVANRI 180 Query: 181 QSDTFRNFEVFLLLWAAYLALACLMRAGFWLLGQLVFTRRRKLGTPL 227 QSDT+RNFEVF++LW YLAL+ LMR GFWLL QLVF RRRKLGTPL Sbjct: 181 QSDTYRNFEVFIVLWGVYLALSWLMRLGFWLLAQLVFPRRRKLGTPL 227 >gb|EFV84587.1| polar amino acid ABC transporter [Achromobacter xylosoxidans C54] Length = 227 Score = 357 bits (915), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 176/227 (77%), Positives = 195/227 (85%) Query: 1 MHYEFDFASVAAHWPLLLQGAWTTVQLSFLATLLGFVLGAACAVARGSRHGWLRAAVSGY 60 M+Y FDFASV WPLL QGAW TV+LSF AT+LGF+LG CA+AR SR GWLRA GY Sbjct: 1 MNYTFDFASVLEQWPLLAQGAWVTVKLSFCATVLGFILGTLCALARNSRLGWLRAVAGGY 60 Query: 61 VELIRNTPLLIQCYFLIFGLSSVGVTMPIMAGATLALVINIGAYSCEIVRAGLESIHHGQ 120 VELIRNTPLLIQ YFLIFGLSS G+TMPIMAGA LALVINIGAY+CEIVRAG+ESI Q Sbjct: 61 VELIRNTPLLIQAYFLIFGLSSAGLTMPIMAGAVLALVINIGAYTCEIVRAGIESIPKDQ 120 Query: 121 LEAASCLGLSPAQVFWHVVLLPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV 180 LEA CL LS QVFWHVVL PAVERV+P+LTSQFVL+MLASSI+S+VGAEELLGVANR+ Sbjct: 121 LEAGECLALSRLQVFWHVVLRPAVERVYPSLTSQFVLLMLASSIMSAVGAEELLGVANRI 180 Query: 181 QSDTFRNFEVFLLLWAAYLALACLMRAGFWLLGQLVFTRRRKLGTPL 227 QSDT+RNFEVF++LW YLAL+ LMR GFWLL Q+VF RRRKLGTPL Sbjct: 181 QSDTYRNFEVFIVLWGVYLALSWLMRLGFWLLAQVVFPRRRKLGTPL 227 >gb|AEJ29196.1| polar amino acid ABC transporter inner membrane subunit [Paracoccus denitrificans SD1] Length = 227 Score = 291 bits (745), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 142/227 (62%), Positives = 177/227 (77%) Query: 1 MHYEFDFASVAAHWPLLLQGAWTTVQLSFLATLLGFVLGAACAVARGSRHGWLRAAVSGY 60 M Y+F+F +V +HWPLL GAW T+ L+F AT+ GFV+G CAVAR S WL+ Y Sbjct: 1 MPYQFNFQAVLSHWPLLAHGAWVTLVLTFWATIAGFVVGTLCAVARTSGPVWLQRIAGAY 60 Query: 61 VELIRNTPLLIQCYFLIFGLSSVGVTMPIMAGATLALVINIGAYSCEIVRAGLESIHHGQ 120 VE+IRNTPLLIQ YFLIFGL+S G+ +PIM GA LALV+N+GAY+ E++RAG+ESI GQ Sbjct: 61 VEVIRNTPLLIQAYFLIFGLASTGMRLPIMVGAVLALVVNVGAYTAEVMRAGMESIKAGQ 120 Query: 121 LEAASCLGLSPAQVFWHVVLLPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV 180 LEAA CLGL+ Q+F HVVL PA+ERV+P+L S +VL+ML SS+LS+VG EEL G +NRV Sbjct: 121 LEAAGCLGLTQRQIFMHVVLRPAMERVYPSLASLYVLLMLGSSVLSAVGVEELFGTSNRV 180 Query: 181 QSDTFRNFEVFLLLWAAYLALACLMRAGFWLLGQLVFTRRRKLGTPL 227 QS T+RNFEVF++L A YL L +MR FW LG ++F RRRKLGTPL Sbjct: 181 QSATYRNFEVFIVLGAIYLGLTMIMRLTFWALGLILFPRRRKLGTPL 227 >ref|YP_001415090.1| polar amino acid ABC transporter inner membrane subunit [Xanthobacter autotrophicus Py2] gb|ABS65433.1| polar amino acid ABC transporter, inner membrane subunit [Xanthobacter autotrophicus Py2] Length = 227 Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 131/227 (57%), Positives = 173/227 (76%) Query: 1 MHYEFDFASVAAHWPLLLQGAWTTVQLSFLATLLGFVLGAACAVARGSRHGWLRAAVSGY 60 M Y+FDFA++ +W G W T+QLSF+AT+LGFVLG CA+ R W++A V+ Y Sbjct: 1 MTYQFDFAALLPYWREFAMGVWLTLQLSFVATVLGFVLGTLCAIGRSDGAPWVKALVACY 60 Query: 61 VELIRNTPLLIQCYFLIFGLSSVGVTMPIMAGATLALVINIGAYSCEIVRAGLESIHHGQ 120 VE+IRNTPLL+Q + + FG++++G+ + A LALV+N+GAY+ EIVRAGLESIH Q Sbjct: 61 VEVIRNTPLLVQIFIIYFGIATLGLHVDANVAAVLALVVNVGAYTSEIVRAGLESIHKSQ 120 Query: 121 LEAASCLGLSPAQVFWHVVLLPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV 180 LEAA CLGLS Q +WHV++ PA+ERV+PALTSQ+VL+MLASSI S + AEEL VANR+ Sbjct: 121 LEAAECLGLSRPQTYWHVIVRPAIERVYPALTSQYVLLMLASSITSQISAEELTAVANRI 180 Query: 181 QSDTFRNFEVFLLLWAAYLALACLMRAGFWLLGQLVFTRRRKLGTPL 227 QSDTFR+FE ++++ YLAL+ ++R FWL G +VF RRRKLGT L Sbjct: 181 QSDTFRSFETYIVVGVLYLALSFVVRIAFWLFGLVVFVRRRKLGTAL 227 >ref|YP_001526199.1| amino acid ABC transporter permease [Azorhizobium caulinodans ORS 571] dbj|BAF89281.1| amino acid ABC transporter permease protein [Azorhizobium caulinodans ORS 571] Length = 227 Score = 268 bits (686), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 127/227 (55%), Positives = 169/227 (74%) Query: 1 MHYEFDFASVAAHWPLLLQGAWTTVQLSFLATLLGFVLGAACAVARGSRHGWLRAAVSGY 60 M Y+FDFA + W G W T+QLS ++T+LGF+LG CA+ R W++ V+ Y Sbjct: 1 MTYQFDFAVLLPFWREFAMGVWLTLQLSLISTVLGFILGTLCAIGRADGPPWVKFLVATY 60 Query: 61 VELIRNTPLLIQCYFLIFGLSSVGVTMPIMAGATLALVINIGAYSCEIVRAGLESIHHGQ 120 VE+IRNTPLL+Q + + FG++++G+ + A LALV+N+GAY+ EIVRAGLESIH Q Sbjct: 61 VEIIRNTPLLVQVFIVYFGIATLGIHVSANLAAVLALVVNVGAYTSEIVRAGLESIHKSQ 120 Query: 121 LEAASCLGLSPAQVFWHVVLLPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV 180 LEAA CLGLS Q +WHV++ PA+ERV+PALTSQ+VL+MLASSI S + AEEL VANR+ Sbjct: 121 LEAAECLGLSRPQTYWHVIVRPAIERVYPALTSQYVLLMLASSITSQISAEELTAVANRI 180 Query: 181 QSDTFRNFEVFLLLWAAYLALACLMRAGFWLLGQLVFTRRRKLGTPL 227 QSDTFR+FE ++++ YLAL+ ++R FWL G +VF RRRKLGT L Sbjct: 181 QSDTFRSFETYIVVGVLYLALSFVVRLAFWLFGLVVFVRRRKLGTAL 227 >ref|YP_003777258.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65350.1| ABC-type amino acid transport system, permease protein [Herbaspirillum seropedicae SmR1] Length = 227 Score = 266 bits (680), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 129/227 (56%), Positives = 167/227 (73%) Query: 1 MHYEFDFASVAAHWPLLLQGAWTTVQLSFLATLLGFVLGAACAVARGSRHGWLRAAVSGY 60 M+Y FDF SV A+W LL GAW T+QLS L+ +LGF +G CA+A SR +R V Y Sbjct: 1 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAY 60 Query: 61 VELIRNTPLLIQCYFLIFGLSSVGVTMPIMAGATLALVINIGAYSCEIVRAGLESIHHGQ 120 VE+IRNTPLL+Q + + FGL+S+G + A +AL +N+GAY+ EI+RAG+ SIH GQ Sbjct: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 Query: 121 LEAASCLGLSPAQVFWHVVLLPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV 180 +EAA CLG+S V+WHVVLLPAVERV+P+LTSQF+L+MLASSI S + AEEL AN V Sbjct: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 Query: 181 QSDTFRNFEVFLLLWAAYLALACLMRAGFWLLGQLVFTRRRKLGTPL 227 QS+TFR+FEV+ ++ AYL L+ L R FW + Q+ F R+RKLGT L Sbjct: 181 QSETFRSFEVYAVIAVAYLVLSFLFRGAFWAISQIAFVRKRKLGTNL 227 >ref|YP_982304.1| polar amino acid ABC transporter inner membrane subunit [Polaromonas naphthalenivorans CJ2] gb|ABM37383.1| amino acid ABC transporter membrane protein 1, PAAT family [Polaromonas naphthalenivorans CJ2] Length = 227 Score = 263 bits (671), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 129/227 (56%), Positives = 167/227 (73%) Query: 1 MHYEFDFASVAAHWPLLLQGAWTTVQLSFLATLLGFVLGAACAVARGSRHGWLRAAVSGY 60 MHY DF++ A+WP LL GAWTT+ LS AT+ GF+LG CA+ + WL S Y Sbjct: 1 MHYSLDFSAPLAYWPELLAGAWTTLALSLSATVFGFLLGVFCALTKTGHSVWLARVASAY 60 Query: 61 VELIRNTPLLIQCYFLIFGLSSVGVTMPIMAGATLALVINIGAYSCEIVRAGLESIHHGQ 120 VELIRNTPLL+Q + + FGLSS+G+ + AT+ALV+N+GAY+ EIVRAG++SI GQ Sbjct: 61 VELIRNTPLLVQIFIVYFGLSSLGLQVGAFTAATIALVVNVGAYTSEIVRAGIDSIPRGQ 120 Query: 121 LEAASCLGLSPAQVFWHVVLLPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV 180 +EAA C+ LS Q HVVL PA+ERV+PALTSQ+VL+MLASSI S + AEEL VANR+ Sbjct: 121 MEAAECMALSRWQTLRHVVLPPAIERVYPALTSQYVLLMLASSICSQISAEELTAVANRI 180 Query: 181 QSDTFRNFEVFLLLWAAYLALACLMRAGFWLLGQLVFTRRRKLGTPL 227 QSDTFR+ E +L++ AYL ++ +MRA FWL+ + F R R+LGTPL Sbjct: 181 QSDTFRSVETYLIVAGAYLLMSLVMRAIFWLIAMVAFPRLRRLGTPL 227 >ref|YP_003962779.1| polar amino acid ABC transporter inner membrane protein [Ketogulonicigenium vulgare Y25] gb|ADO41479.1| polar amino acid ABC transporter, inner membrane subunit [Ketogulonicigenium vulgare Y25] gb|AEM42333.1| Amino acid ABC transporter permease protein [Ketogulonigenium vulgarum WSH-001] Length = 226 Score = 261 bits (668), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 118/224 (52%), Positives = 165/224 (73%) Query: 1 MHYEFDFASVAAHWPLLLQGAWTTVQLSFLATLLGFVLGAACAVARGSRHGWLRAAVSGY 60 M Y+F+FA++ +WP + GAW T+QL+ A + G V+G CA+AR SR LR+ Y Sbjct: 1 MSYQFNFAALVPYWPDFISGAWVTLQLTVGAVIFGMVIGVLCAIARRSRFVALRSVAGVY 60 Query: 61 VELIRNTPLLIQCYFLIFGLSSVGVTMPIMAGATLALVINIGAYSCEIVRAGLESIHHGQ 120 VE +RNTP ++Q +FL FG+SSVGV MPIM A ALV+N+GAY+ EI+RAG+++I GQ Sbjct: 61 VETVRNTPFIVQIFFLFFGMSSVGVRMPIMVAAIFALVVNVGAYTAEIIRAGMDAIPKGQ 120 Query: 121 LEAASCLGLSPAQVFWHVVLLPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV 180 +EAA LGLS Q++ ++L+PA+E+V+PALTSQFVLMML +SI S + AEEL GVAN + Sbjct: 121 IEAAEALGLSQFQIYRDIILMPAIEKVYPALTSQFVLMMLTTSICSQISAEELTGVANNI 180 Query: 181 QSDTFRNFEVFLLLWAAYLALACLMRAGFWLLGQLVFTRRRKLG 224 QS+TFR+FE ++++ Y+ + +MR GFWL+G F RRR +G Sbjct: 181 QSNTFRSFETYIVIGLFYIGITLMMRFGFWLIGLYAFPRRRVMG 224 >ref|YP_001769970.1| polar amino acid ABC transporter inner membrane subunit [Methylobacterium sp. 4-46] gb|ACA17536.1| polar amino acid ABC transporter, inner membrane subunit [Methylobacterium sp. 4-46] Length = 227 Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 125/227 (55%), Positives = 163/227 (71%) Query: 1 MHYEFDFASVAAHWPLLLQGAWTTVQLSFLATLLGFVLGAACAVARGSRHGWLRAAVSGY 60 M + DF +V WP L GA T++LS +AT +G LG A+ R SRH LR Y Sbjct: 1 MSLDLDFGAVLERWPSFLDGALLTLELSGIATAVGGALGGITAIGRRSRHAALRRLCEVY 60 Query: 61 VELIRNTPLLIQCYFLIFGLSSVGVTMPIMAGATLALVINIGAYSCEIVRAGLESIHHGQ 120 VE IRNTPLL+Q + + FGL+S+G + A LAL IN+GAY+ EIVRAGL++I GQ Sbjct: 61 VEAIRNTPLLVQIFLVYFGLASLGFRFSALTVAALALTINVGAYTTEIVRAGLDAIPRGQ 120 Query: 121 LEAASCLGLSPAQVFWHVVLLPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV 180 +EAA L LS AQ++ HVVLLPA+ERV+P+LTSQFVL+MLASS+ S + AEEL VAN + Sbjct: 121 IEAAEGLALSRAQIYRHVVLLPAIERVYPSLTSQFVLLMLASSVTSQISAEELTAVANYI 180 Query: 181 QSDTFRNFEVFLLLWAAYLALACLMRAGFWLLGQLVFTRRRKLGTPL 227 QSDT+R FE ++++ Y+AL+ +MRAGFW LG ++F RRR+LGTPL Sbjct: 181 QSDTYRAFETYIVVALIYVALSFIMRAGFWGLGLVLFPRRRRLGTPL 227