BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0229.p (137 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773700.1| transcription regulator protein [Herbaspiril... 283 5e-75 ref|ZP_03269484.1| transcriptional regulator, TetR family [Burkh... 100 5e-20 ref|YP_003605281.1| transcriptional regulator, TetR family [Burk... 100 6e-20 ref|ZP_06842900.1| transcriptional regulator, TetR family [Burkh... 99 2e-19 ref|YP_559049.1| TetR family transcriptional regulator [Burkhold... 99 2e-19 ref|ZP_02886357.1| transcriptional regulator, TetR family [Burkh... 98 4e-19 ref|YP_004227987.1| regulatory protein TetR [Burkholderia sp. CC... 95 4e-18 ref|YP_003907143.1| regulatory protein TetR [Burkholderia sp. CC... 94 5e-18 ref|YP_001895914.1| TetR family transcriptional regulator [Burkh... 92 4e-17 ref|ZP_02379504.1| transcriptional regulator, TetR family protei... 90 1e-16 >ref|YP_003773700.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ61792.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 221 Score = 283 bits (725), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 137/137 (100%), Positives = 137/137 (100%) Query: 1 MTDAAVLEDELAAQYSRLYRDDKCSLLWMEARIVALRDEKFRAQLDGFLEERYRQITGFV 60 MTDAAVLEDELAAQYSRLYRDDKCSLLWMEARIVALRDEKFRAQLDGFLEERYRQITGFV Sbjct: 85 MTDAAVLEDELAAQYSRLYRDDKCSLLWMEARIVALRDEKFRAQLDGFLEERYRQITGFV 144 Query: 61 EAYGQLTGTTLSAPPREIAIGLMALCEGVSFSYRCVPHIVDGKTAESVLSWFLKASIAVP 120 EAYGQLTGTTLSAPPREIAIGLMALCEGVSFSYRCVPHIVDGKTAESVLSWFLKASIAVP Sbjct: 145 EAYGQLTGTTLSAPPREIAIGLMALCEGVSFSYRCVPHIVDGKTAESVLSWFLKASIAVP 204 Query: 121 PAPAPAPTKPVGRKRAS 137 PAPAPAPTKPVGRKRAS Sbjct: 205 PAPAPAPTKPVGRKRAS 221 >ref|ZP_03269484.1| transcriptional regulator, TetR family [Burkholderia sp. H160] gb|EDZ98932.1| transcriptional regulator, TetR family [Burkholderia sp. H160] Length = 178 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 42/99 (42%), Positives = 67/99 (67%) Query: 15 YSRLYRDDKCSLLWMEARIVALRDEKFRAQLDGFLEERYRQITGFVEAYGQLTGTTLSAP 74 YS L+R++KC LLW+EA+++A+RD +FR + + F+ E+ Q++ +V + + GT + P Sbjct: 71 YSSLHRENKCFLLWVEAKLLAVRDGRFRVRFNAFMHEKIEQLSAYVREFSERVGTPMQVP 130 Query: 75 PREIAIGLMALCEGVSFSYRCVPHIVDGKTAESVLSWFL 113 P ++AIGLM LC+GV F Y P V + AE+VL+ F Sbjct: 131 PEQLAIGLMGLCDGVQFFYTVDPQNVPTEMAEAVLAGFF 169 >ref|YP_003605281.1| transcriptional regulator, TetR family [Burkholderia sp. CCGE1002] gb|ADG15770.1| transcriptional regulator, TetR family [Burkholderia sp. CCGE1002] Length = 205 Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 43/99 (43%), Positives = 67/99 (67%) Query: 15 YSRLYRDDKCSLLWMEARIVALRDEKFRAQLDGFLEERYRQITGFVEAYGQLTGTTLSAP 74 YS L+R++KC LLW+EA+++A+RD +FR + + F+ E+ Q++ +V + + GT +S P Sbjct: 98 YSSLHRENKCFLLWVEAKLLAVRDGRFRLRFNAFMHEKIEQLSAYVREFSERVGTPMSMP 157 Query: 75 PREIAIGLMALCEGVSFSYRCVPHIVDGKTAESVLSWFL 113 P ++AIGLM LC+GV F Y P V + AE VL+ F Sbjct: 158 PEQLAIGLMGLCDGVQFFYTVDPQNVPTEMAEMVLAGFF 196 >ref|ZP_06842900.1| transcriptional regulator, TetR family [Burkholderia sp. Ch1-1] gb|EFG69354.1| transcriptional regulator, TetR family [Burkholderia sp. Ch1-1] Length = 205 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 42/107 (39%), Positives = 68/107 (63%) Query: 7 LEDELAAQYSRLYRDDKCSLLWMEARIVALRDEKFRAQLDGFLEERYRQITGFVEAYGQL 66 +E+ + YS L+R++KC LLW+EA+++A+RD +FR + + F+ E+ Q++ ++ + Sbjct: 90 MEERVLRYYSNLHRENKCFLLWVEAKLLAVRDGRFRMRFNAFMHEKLEQLSAYIREFSAR 149 Query: 67 TGTTLSAPPREIAIGLMALCEGVSFSYRCVPHIVDGKTAESVLSWFL 113 GT + PP +AIGLM LC+GV F Y P V + AE VL+ F Sbjct: 150 VGTPMPMPPETLAIGLMGLCDGVQFFYTVDPQNVPAEMAEKVLAGFF 196 >ref|YP_559049.1| TetR family transcriptional regulator [Burkholderia xenovorans LB400] gb|ABE30997.1| transcriptional regulator, TetR family [Burkholderia xenovorans LB400] Length = 205 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 42/107 (39%), Positives = 68/107 (63%) Query: 7 LEDELAAQYSRLYRDDKCSLLWMEARIVALRDEKFRAQLDGFLEERYRQITGFVEAYGQL 66 +E+ + YS L+R++KC LLW+EA+++A+RD +FR + + F+ E+ Q++ ++ + Sbjct: 90 MEERVLRYYSNLHRENKCFLLWVEAKLLAVRDGRFRMRFNAFMHEKLEQLSAYIREFSAR 149 Query: 67 TGTTLSAPPREIAIGLMALCEGVSFSYRCVPHIVDGKTAESVLSWFL 113 GT + PP +AIGLM LC+GV F Y P V + AE VL+ F Sbjct: 150 VGTPMLMPPETLAIGLMGLCDGVQFFYTVDPQNVPAEMAEKVLAGFF 196 >ref|ZP_02886357.1| transcriptional regulator, TetR family [Burkholderia graminis C4D1M] gb|EDT08011.1| transcriptional regulator, TetR family [Burkholderia graminis C4D1M] Length = 178 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 43/107 (40%), Positives = 69/107 (64%) Query: 7 LEDELAAQYSRLYRDDKCSLLWMEARIVALRDEKFRAQLDGFLEERYRQITGFVEAYGQL 66 +E+ + YS L+R++KC LLW+EA+++A+RD +FR + + F+ E+ Q+ +V + + Sbjct: 63 MEERVMRYYSNLHRENKCFLLWVEAKLLAVRDGRFRLRFNAFMHEKLEQLAAYVSEFSER 122 Query: 67 TGTTLSAPPREIAIGLMALCEGVSFSYRCVPHIVDGKTAESVLSWFL 113 GT L P +A+GLM LC+GV F Y P V +TAE+VL+ F Sbjct: 123 VGTPLPLPAATLALGLMGLCDGVQFFYTVDPQNVPSETAEAVLAGFF 169 >ref|YP_004227987.1| regulatory protein TetR [Burkholderia sp. CCGE1001] gb|ADX54927.1| regulatory protein TetR [Burkholderia sp. CCGE1001] Length = 205 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 43/107 (40%), Positives = 68/107 (63%) Query: 7 LEDELAAQYSRLYRDDKCSLLWMEARIVALRDEKFRAQLDGFLEERYRQITGFVEAYGQL 66 +E+ + YS L R++KC LLW+EA+++A+RD +FR + + FL E+ Q+ +V + + Sbjct: 90 MEERVMRYYSNLPRENKCFLLWVEAKLLAVRDGRFRLRFNAFLHEKLEQLAAYVREFSER 149 Query: 67 TGTTLSAPPREIAIGLMALCEGVSFSYRCVPHIVDGKTAESVLSWFL 113 GT L P +A+GLM LC+GV F + P V G+ AE+VL+ F Sbjct: 150 VGTPLPLPAEMLAMGLMGLCDGVQFFHAVDPQNVPGEMAEAVLTGFF 196 >ref|YP_003907143.1| regulatory protein TetR [Burkholderia sp. CCGE1003] gb|ADN57852.1| regulatory protein TetR [Burkholderia sp. CCGE1003] Length = 205 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 42/107 (39%), Positives = 67/107 (62%) Query: 7 LEDELAAQYSRLYRDDKCSLLWMEARIVALRDEKFRAQLDGFLEERYRQITGFVEAYGQL 66 +E + YS L+R++KC LLW+EA+++A RD +FR + + FL E+ Q++ +V + + Sbjct: 90 MEQRVMHYYSNLHRENKCFLLWVEAKLLAARDGRFRLRFNAFLHEKLAQLSAYVREFSER 149 Query: 67 TGTTLSAPPREIAIGLMALCEGVSFSYRCVPHIVDGKTAESVLSWFL 113 GT L P +A+GLM LC+GV F + P V G A++VL+ F Sbjct: 150 VGTPLPLPAEMLAMGLMGLCDGVQFFHTVDPQNVPGDMAQAVLAGFF 196 >ref|YP_001895914.1| TetR family transcriptional regulator [Burkholderia phytofirmans PsJN] gb|ACD16690.1| transcriptional regulator, TetR family [Burkholderia phytofirmans PsJN] Length = 205 Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 67/107 (62%) Query: 7 LEDELAAQYSRLYRDDKCSLLWMEARIVALRDEKFRAQLDGFLEERYRQITGFVEAYGQL 66 +E+ + YS L+R++KC LLW EA+++A+RD +FR + + F+ ++ Q+ ++ + Sbjct: 90 MEERVLRYYSNLHRENKCFLLWAEAKLLAVRDGRFRIRFNAFMHDKLEQLGVYIREFSAR 149 Query: 67 TGTTLSAPPREIAIGLMALCEGVSFSYRCVPHIVDGKTAESVLSWFL 113 GT + PP +AIGLM+LC+G+ F Y P V + E+VL+ F Sbjct: 150 VGTPMLMPPETLAIGLMSLCDGLQFFYTVDPQNVPAERVEAVLAGFF 196 >ref|ZP_02379504.1| transcriptional regulator, TetR family protein [Burkholderia ubonensis Bu] Length = 201 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 41/105 (39%), Positives = 65/105 (61%) Query: 13 AQYSRLYRDDKCSLLWMEARIVALRDEKFRAQLDGFLEERYRQITGFVEAYGQLTGTTLS 72 A Y R++ DD+C LLW+EA++ A RD KFR + + FL+E ++ + A+ + +GT L Sbjct: 91 AYYRRMHIDDRCHLLWVEAKLQAARDAKFRVRFNQFLQESRTRMADIIRAFSEHSGTPLR 150 Query: 73 APPREIAIGLMALCEGVSFSYRCVPHIVDGKTAESVLSWFLKASI 117 P +A+GLM+LC+GV Y P V + AE+VL+ F ++ Sbjct: 151 LPAETLALGLMSLCDGVQSYYTADPQHVSAEAAEAVLAGFFSWAV 195