BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0161.p (338 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773753.1| AraC family transcription regulator protein ... 682 0.0 gb|EFV87711.1| AraC family Transcriptional regulator [Achromobac... 401 e-110 gb|EGP47992.1| AraC family regulatory helix-turn-helix protein 3... 399 e-109 ref|YP_003980895.1| AraC family transcriptional regulator [Achro... 399 e-109 ref|YP_002944700.1| AraC family transcriptional regulator [Vario... 387 e-105 ref|YP_004155271.1| AraC family transcriptional regulator [Vario... 380 e-103 ref|YP_004752608.1| hypothetical protein CFU_1954 [Collimonas fu... 296 4e-78 gb|ADC94816.1| putative transcriptional regulator [Collimonas sp... 295 7e-78 ref|YP_001188126.1| AraC family transcriptional regulator [Pseud... 290 2e-76 ref|YP_004474891.1| AraC family transcriptional regulator [Pseud... 289 5e-76 >ref|YP_003773753.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ61845.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 338 Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/338 (99%), Positives = 337/338 (99%) Query: 1 MELDLHTIQDAAALLSPEAHDATPAPAPAPAGEEARFQAMQQELLQLLEHYTTGVEGMLE 60 MELDLHTIQDAAALLSPEAHDA PAPAPAPAGEEARFQAMQQELLQLLEHYTTGVEGMLE Sbjct: 1 MELDLHTIQDAAALLSPEAHDAAPAPAPAPAGEEARFQAMQQELLQLLEHYTTGVEGMLE 60 Query: 61 TAIPNMEIYRITCPSGPKHAVQKPVFAVIAQGSKRIFVGDEIYEYDPMHYLVASVDLPVV 120 TAIPNMEIYRITCPSGPKHAVQKPVFAVIAQGSKRIFVGDEIYEYDPMHYLVASVDLPVV Sbjct: 61 TAIPNMEIYRITCPSGPKHAVQKPVFAVIAQGSKRIFVGDEIYEYDPMHYLVASVDLPVV 120 Query: 121 GKVMVTSPDEPYLGLRLELDTQEIGELIGDENLPAAAQVSEGAARGLYVNRLDVDLLDAV 180 GKVMVTSPDEPYLGLRLELDTQEIGELIGDENLPAAAQVSEGAARGLYVNRLDVDLLDAV Sbjct: 121 GKVMVTSPDEPYLGLRLELDTQEIGELIGDENLPAAAQVSEGAARGLYVNRLDVDLLDAV 180 Query: 181 LRLLRLQERPADVPILAPMIRREILYRLLMNGQGALLRQTVLQDSQMNRVAKAIRLIKEG 240 LRLLRLQERPADVPILAPMIRREILYRLLMNGQGALLRQTVLQDSQMNRVAKAIRLIKEG Sbjct: 181 LRLLRLQERPADVPILAPMIRREILYRLLMNGQGALLRQTVLQDSQMNRVAKAIRLIKEG 240 Query: 241 YDQALRIDDIARDVHMSVSSLHHHFKLVTAMSPLQYQKNLRLQEARKLILTADASVATAA 300 YDQALRIDDIARDVHMSVSSLHHHFKLVTAMSPLQYQKNLRLQEARKLILTADASVATAA Sbjct: 241 YDQALRIDDIARDVHMSVSSLHHHFKLVTAMSPLQYQKNLRLQEARKLILTADASVATAA 300 Query: 301 HRVGYESSSQFSREYSRLFGAPPLRDKRRWQEEEAPVL 338 HRVGYESSSQFSREYSRLFGAPPLRDKRRWQEEEAPVL Sbjct: 301 HRVGYESSSQFSREYSRLFGAPPLRDKRRWQEEEAPVL 338 >gb|EFV87711.1| AraC family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 315 Score = 401 bits (1030), Expect = e-110, Method: Compositional matrix adjust. Identities = 201/310 (64%), Positives = 241/310 (77%), Gaps = 2/310 (0%) Query: 24 PAPAPAPAGEEARFQAMQQELLQLLEHYTTGVEGMLETAIPNMEIYRITCPSGPKHAVQK 83 P P A F+ + ELL LLE T +EG L+T I + ++RI+ P+GPK A+QK Sbjct: 3 PVPTDTITPPNAVFEPARHELLCLLERMTGTLEGSLDTPIEGLFLHRISQPTGPKPALQK 62 Query: 84 PVFAVIAQGSKRIFVGDEIYEYDPMHYLVASVDLPVVGKVMVTSPDEPYLGLRLELDTQE 143 AVIAQGSKR+ +GDE YEYDP HYL++SVDLPVV KV V SP PYLGLRL+L+ +E Sbjct: 63 AALAVIAQGSKRVLIGDEAYEYDPFHYLISSVDLPVVAKVSVASPTLPYLGLRLDLNPEE 122 Query: 144 IGELIGDENLPAAAQVSEGAARGLYVNRLDVDLLDAVLRLLRLQERPADVPILAPMIRRE 203 I LI DENLP V A+R + VN L LLD +LRLLRL + P D+PILAPM++RE Sbjct: 123 ITALISDENLPPL--VPAEASRAMCVNPLGGTLLDVMLRLLRLLDTPRDIPILAPMVKRE 180 Query: 204 ILYRLLMNGQGALLRQTVLQDSQMNRVAKAIRLIKEGYDQALRIDDIARDVHMSVSSLHH 263 +LYRLLMNGQG +LRQTVLQDSQ+NRVAKAIR++++ Y LR+++IARDVHMSVSSLHH Sbjct: 181 LLYRLLMNGQGVVLRQTVLQDSQLNRVAKAIRILRDNYALPLRVEEIARDVHMSVSSLHH 240 Query: 264 HFKLVTAMSPLQYQKNLRLQEARKLILTADASVATAAHRVGYESSSQFSREYSRLFGAPP 323 HFK TAMSPLQYQK+LRLQEAR+L+LT DA VA AAH VGYESSSQFSREYSRLFG PP Sbjct: 241 HFKQATAMSPLQYQKHLRLQEARRLMLTDDAGVALAAHAVGYESSSQFSREYSRLFGTPP 300 Query: 324 LRDKRRWQEE 333 LRDK+RW++E Sbjct: 301 LRDKQRWKDE 310 >gb|EGP47992.1| AraC family regulatory helix-turn-helix protein 31 [Achromobacter xylosoxidans AXX-A] Length = 311 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 200/313 (63%), Positives = 243/313 (77%), Gaps = 11/313 (3%) Query: 21 DATPAPAPAPAGEEARFQAMQQELLQLLEHYTTGVEGMLETAIPNMEIYRITCPSGPKHA 80 D TP P F+ + ELL LLE T +EG L+T + + ++R++ P+GPK Sbjct: 5 DHTPNPV---------FEPARHELLCLLERMTGTLEGSLDTPVEGLYLHRLSQPTGPKPG 55 Query: 81 VQKPVFAVIAQGSKRIFVGDEIYEYDPMHYLVASVDLPVVGKVMVTSPDEPYLGLRLELD 140 +QK AVIAQGSKR+ +G+E YEYDP HYL++SVDLPVV KV V SP PYLGLRL+L+ Sbjct: 56 LQKAALAVIAQGSKRLLIGEETYEYDPFHYLISSVDLPVVAKVSVASPTLPYLGLRLDLN 115 Query: 141 TQEIGELIGDENLPAAAQVSEGAARGLYVNRLDVDLLDAVLRLLRLQERPADVPILAPMI 200 +EI ELI DENLP V ++R L +N L LLD +LRLLRL + P D+PILAPMI Sbjct: 116 PEEITELISDENLPPL--VPAESSRALCINPLGGTLLDVMLRLLRLLDTPRDIPILAPMI 173 Query: 201 RREILYRLLMNGQGALLRQTVLQDSQMNRVAKAIRLIKEGYDQALRIDDIARDVHMSVSS 260 +RE+LYRLLMNGQG +LRQTVLQDSQ+NRVAKAIR++++ Y Q LR+++IARDVHMSVSS Sbjct: 174 KRELLYRLLMNGQGVVLRQTVLQDSQLNRVAKAIRILRDNYAQPLRVEEIARDVHMSVSS 233 Query: 261 LHHHFKLVTAMSPLQYQKNLRLQEARKLILTADASVATAAHRVGYESSSQFSREYSRLFG 320 LHHHFK TAMSPLQYQK+LRLQEAR+L+LT DA VA AAH VGYESSSQFSREYSRLFG Sbjct: 234 LHHHFKQATAMSPLQYQKHLRLQEARRLMLTDDAGVALAAHAVGYESSSQFSREYSRLFG 293 Query: 321 APPLRDKRRWQEE 333 PPLRDK+RW++E Sbjct: 294 TPPLRDKQRWKDE 306 >ref|YP_003980895.1| AraC family transcriptional regulator [Achromobacter xylosoxidans A8] gb|ADP18180.1| bacterial regulatory helix-turn-helix protein, AraC family protein 31 [Achromobacter xylosoxidans A8] Length = 320 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 198/302 (65%), Positives = 243/302 (80%), Gaps = 2/302 (0%) Query: 34 EARFQAMQQELLQLLEHYTTGVEGMLETAIPNMEIYRITCPSGPKHAVQKPVFAVIAQGS 93 +A ++ ++ELL LE T +EG L+T I + ++R++ P+G K +QK FAVIAQGS Sbjct: 17 DAAYEPARRELLCTLERMTGDLEGSLDTPIEGLFLHRLSQPTGAKPGLQKAAFAVIAQGS 76 Query: 94 KRIFVGDEIYEYDPMHYLVASVDLPVVGKVMVTSPDEPYLGLRLELDTQEIGELIGDENL 153 KR+ +GDE YEYDP HYL++SV+LPVV KV V SP PYLGLRL+L+ +EI LI DENL Sbjct: 77 KRLLIGDEAYEYDPFHYLISSVELPVVAKVSVASPTLPYLGLRLDLNVEEITALISDENL 136 Query: 154 PAAAQVSEGAARGLYVNRLDVDLLDAVLRLLRLQERPADVPILAPMIRREILYRLLMNGQ 213 PA Q A R L VN L LLDAVLRLLRL + P D+PILAP+++RE+LYRLLMNGQ Sbjct: 137 PA--QPPAEAGRALCVNPLGSVLLDAVLRLLRLLDTPRDIPILAPLVKRELLYRLLMNGQ 194 Query: 214 GALLRQTVLQDSQMNRVAKAIRLIKEGYDQALRIDDIARDVHMSVSSLHHHFKLVTAMSP 273 G +LRQ+VLQDSQ+NRVAKAIR++++ Y Q LR+++IARDVHMSVSSLHHHFK TAMSP Sbjct: 195 GTVLRQSVLQDSQLNRVAKAIRILRDNYAQPLRVEEIARDVHMSVSSLHHHFKQATAMSP 254 Query: 274 LQYQKNLRLQEARKLILTADASVATAAHRVGYESSSQFSREYSRLFGAPPLRDKRRWQEE 333 LQYQK+LRLQEAR+L+LT DA VA AAH VGYESSSQFSREYSRLFG+PPLRDK+RW++E Sbjct: 255 LQYQKHLRLQEARRLMLTDDAGVALAAHAVGYESSSQFSREYSRLFGSPPLRDKQRWKDE 314 Query: 334 EA 335 A Sbjct: 315 TA 316 >ref|YP_002944700.1| AraC family transcriptional regulator [Variovorax paradoxus S110] gb|ACS19434.1| transcriptional regulator, AraC family [Variovorax paradoxus S110] Length = 330 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 194/316 (61%), Positives = 238/316 (75%), Gaps = 8/316 (2%) Query: 16 SPEAHDATPAPAP-APAGEEARFQAMQQELLQLLEHYTTGVEGMLETAIPNMEIYRITCP 74 +PE A P P P +EAR +EL+ L+ T G +G +ET + ++++ I+ P Sbjct: 5 TPEIAAAIAQPMPLEPELDEAR-----KELVALINRITRGQDGTVETPVAGLQVFCISKP 59 Query: 75 SGPKHAVQKPVFAVIAQGSKRIFVGDEIYEYDPMHYLVASVDLPVVGKVMVTSPDEPYLG 134 GPKHA P +IAQGSKRI VGD+IY YDPMHYLV SVDLPV G+V +TS +EPYLG Sbjct: 60 DGPKHAFATPALGLIAQGSKRIIVGDDIYVYDPMHYLVTSVDLPVCGQVRLTSDNEPYLG 119 Query: 135 LRLELDTQEIGELIGDENLPAAAQVSEGAARGLYVNRLDVDLLDAVLRLLRLQERPADVP 194 +RLEL EIG+LIGDE LPA A A+RG+YVNR+ + +L+ VLRLLRL E P DVP Sbjct: 120 VRLELAIDEIGKLIGDEKLPAKANAP--ASRGMYVNRIGMPVLEPVLRLLRLVESPEDVP 177 Query: 195 ILAPMIRREILYRLLMNGQGALLRQTVLQDSQMNRVAKAIRLIKEGYDQALRIDDIARDV 254 I+AP+I+REI+YRLL+NG+GA LRQ LQDS R+AKAI ++ Y Q+LRI+D+AR V Sbjct: 178 IMAPLIKREIMYRLLVNGEGARLRQIALQDSHTQRIAKAISALRINYSQSLRIEDMARAV 237 Query: 255 HMSVSSLHHHFKLVTAMSPLQYQKNLRLQEARKLILTADASVATAAHRVGYESSSQFSRE 314 HMSVSS HHHFK VTAMSPLQYQK LRLQEAR+ +L A A V++AAH VGYES SQF+RE Sbjct: 238 HMSVSSFHHHFKAVTAMSPLQYQKQLRLQEARRQMLMAGADVSSAAHSVGYESPSQFARE 297 Query: 315 YSRLFGAPPLRDKRRW 330 YSR+FGAPPLRDKRRW Sbjct: 298 YSRMFGAPPLRDKRRW 313 >ref|YP_004155271.1| AraC family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU37160.1| transcriptional regulator, AraC family [Variovorax paradoxus EPS] Length = 399 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 191/321 (59%), Positives = 234/321 (72%), Gaps = 5/321 (1%) Query: 16 SPEAHDATPAPAPA---PAGEEARFQAMQQELLQLLEHYTTGVEGMLETAIPNMEIYRIT 72 +P D TP A A P E ++EL+ L+ T G +G +ET + +++Y I+ Sbjct: 67 APYMSDETPEIAAALAQPMPLEPELDEARKELVALINRITGGRDGTVETPVAGLQVYCIS 126 Query: 73 CPSGPKHAVQKPVFAVIAQGSKRIFVGDEIYEYDPMHYLVASVDLPVVGKVMVTSPDEPY 132 P PKHA P +IAQGSKRI +GD+IY YDPMHYLV SVDLPV G+V +TS +EPY Sbjct: 127 KPDRPKHAFATPALGLIAQGSKRIIMGDDIYVYDPMHYLVTSVDLPVCGQVRLTSDNEPY 186 Query: 133 LGLRLELDTQEIGELIGDENLPAAAQVSEGAARGLYVNRLDVDLLDAVLRLLRLQERPAD 192 LGLRLEL EIGELIGDE LPA A A+RG+YVNR+ + +L+ VLRLLRL E P D Sbjct: 187 LGLRLELALDEIGELIGDEKLPAKANAP--ASRGMYVNRIAMPVLEPVLRLLRLVENPED 244 Query: 193 VPILAPMIRREILYRLLMNGQGALLRQTVLQDSQMNRVAKAIRLIKEGYDQALRIDDIAR 252 VPI+AP+I+REI+YRLL+NG+GA LRQ LQDS R+AKAI ++ Y Q+LR++D+AR Sbjct: 245 VPIMAPLIKREIMYRLLVNGEGARLRQIALQDSHTQRIAKAISALRINYAQSLRVEDMAR 304 Query: 253 DVHMSVSSLHHHFKLVTAMSPLQYQKNLRLQEARKLILTADASVATAAHRVGYESSSQFS 312 VHMSVSS HHHFK VTAMSPLQYQK LRLQEAR+ +L VA+AAH VGYES SQF+ Sbjct: 305 AVHMSVSSFHHHFKAVTAMSPLQYQKQLRLQEARRQMLVTGIDVASAAHSVGYESPSQFA 364 Query: 313 REYSRLFGAPPLRDKRRWQEE 333 REY R+FGAPPLRDK+RW E Sbjct: 365 REYGRMFGAPPLRDKQRWLSE 385 >ref|YP_004752608.1| hypothetical protein CFU_1954 [Collimonas fungivorans Ter331] gb|AEK61785.1| hypothetical protein CFU_1954 [Collimonas fungivorans Ter331] Length = 335 Score = 296 bits (757), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 152/297 (51%), Positives = 204/297 (68%), Gaps = 3/297 (1%) Query: 41 QQELLQLLEHYTTGVEGMLETAIPNMEIYRITCPSGPKHAVQKPVFAVIAQGSKRIFVGD 100 Q EL +L+E YT ++G +TAI + + R++ PS P H + KP +IAQG K+ + D Sbjct: 38 QLELARLIEQYTV-IDGTHQTAIAPLNLVRLSQPSAPAHGLHKPALCIIAQGQKQAMLAD 96 Query: 101 EIYEYDPMHYLVASVDLPVVGKVMVTSPDEPYLGLRLELDTQEIGELIGDENLPAAAQVS 160 E+Y Y+ YLV SVDLPV+G V +P+ PYL LRL+L+ +EIG++I + A+ Sbjct: 97 EVYIYNSAQYLVVSVDLPVMGHVTQATPELPYLCLRLDLEPKEIGDMIMTGEV--RAKKP 154 Query: 161 EGAARGLYVNRLDVDLLDAVLRLLRLQERPADVPILAPMIRREILYRLLMNGQGALLRQT 220 + ARG++V++ + LLDAVLRL++L P D+P+LAP+ REILYRLL + QG +L+Q Sbjct: 155 DLPARGMFVSKANSSLLDAVLRLVQLLATPQDIPMLAPLAMREILYRLLQDEQGGMLQQI 214 Query: 221 VLQDSQMNRVAKAIRLIKEGYDQALRIDDIARDVHMSVSSLHHHFKLVTAMSPLQYQKNL 280 + DSQ V KAI LIK Y LRI+++AR+ +MS SSLHHHFK VTAM+PLQYQK L Sbjct: 215 AMSDSQAQHVVKAIELIKRDYRLPLRIENLAREANMSSSSLHHHFKAVTAMTPLQYQKQL 274 Query: 281 RLQEARKLILTADASVATAAHRVGYESSSQFSREYSRLFGAPPLRDKRRWQEEEAPV 337 RLQEAR+L+ ATA H VGYES SQFSREY+R+FG+PP RD R + A V Sbjct: 275 RLQEARRLLFAQIGDAATAGHLVGYESPSQFSREYNRMFGSPPARDVARLRAAGAAV 331 >gb|ADC94816.1| putative transcriptional regulator [Collimonas sp. MPS11E8] Length = 314 Score = 295 bits (755), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 155/304 (50%), Positives = 206/304 (67%), Gaps = 8/304 (2%) Query: 31 AGEEARFQAMQQ-ELLQLLEHYTTGVEGMLETAIPNMEIYRITCPSGPKHAVQKPVFAVI 89 A AR ++QQ EL +L+ Y +G+ +TAI + + R++ PS P H + KP +I Sbjct: 6 AISSARAVSLQQAELARLIAQYA-ATDGVHQTAIAPLNLVRMSQPSVPTHTLHKPALCII 64 Query: 90 AQGSKRIFVGDEIYEYDPMHYLVASVDLPVVGKVMVTSPDEPYLGLRLELDTQEIGELIG 149 AQG K+ + DE+Y Y+ YLV SVDLPV G+V SP+ PYL +RL+LD +EIG+LI Sbjct: 65 AQGQKQAMLADELYVYNSASYLVVSVDLPVTGQVTQASPELPYLCVRLDLDPKEIGDLI- 123 Query: 150 DENLPAAAQV--SEGAARGLYVNRLDVDLLDAVLRLLRLQERPADVPILAPMIRREILYR 207 + A +V ++ ARG++V++ LLDA+LRL++L P D+P+LAP+ REILYR Sbjct: 124 ---MAAEHRVKKNDAPARGMFVSKATTSLLDAILRLMQLLAAPQDIPVLAPLAMREILYR 180 Query: 208 LLMNGQGALLRQTVLQDSQMNRVAKAIRLIKEGYDQALRIDDIARDVHMSVSSLHHHFKL 267 LL QG +L+Q + DSQ V KAI LIK Y LRI+ +AR+ +MS SSLHHHFK Sbjct: 181 LLQEEQGGMLQQIAMSDSQAQHVVKAIELIKRDYRLPLRIESLAREANMSSSSLHHHFKA 240 Query: 268 VTAMSPLQYQKNLRLQEARKLILTADASVATAAHRVGYESSSQFSREYSRLFGAPPLRDK 327 VTAM+PLQ+QK LRLQEAR+L+ T ATA H VGYES SQFSREY+R+FGAPP RD Sbjct: 241 VTAMTPLQFQKQLRLQEARRLLFTEIGDAATAGHLVGYESPSQFSREYNRMFGAPPARDA 300 Query: 328 RRWQ 331 R + Sbjct: 301 ARLR 304 >ref|YP_001188126.1| AraC family transcriptional regulator [Pseudomonas mendocina ymp] gb|ABP85394.1| transcriptional regulator, AraC family [Pseudomonas mendocina ymp] Length = 315 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 148/293 (50%), Positives = 204/293 (69%), Gaps = 3/293 (1%) Query: 40 MQQELLQLLEHYTTGVEGMLETAIPNMEIYRITCPSGPKHAVQKPVFAVIAQGSKRIFVG 99 + E+ +L+E + +G+ TAIP +++ R T PS P V P +IAQG K I +G Sbjct: 18 LSHEMARLVERFVPD-DGLHLTAIPGLKLARATSPSLPMQTVYDPCLCIIAQGRKEIRLG 76 Query: 100 DEIYEYDPMHYLVASVDLPVVGKVMVTSPDEPYLGLRLELDTQEIGELIGDENLPAAAQV 159 DE+Y YDP++YLVASV LPV G+V+ SP+ PYL L LE+D I L+ + +P Sbjct: 77 DELYVYDPLNYLVASVMLPVTGRVIEASPEAPYLSLALEIDPALISSLLTE--MPPIPAP 134 Query: 160 SEGAARGLYVNRLDVDLLDAVLRLLRLQERPADVPILAPMIRREILYRLLMNGQGALLRQ 219 + R L+++RLD LLDAV+RLLRL E P D+ +LAP+ REI YR+L++ QG L + Sbjct: 135 DAASQRALFLDRLDPRLLDAVIRLLRLLETPRDIAMLAPLALREIFYRMLLSPQGHRLHE 194 Query: 220 TVLQDSQMNRVAKAIRLIKEGYDQALRIDDIARDVHMSVSSLHHHFKLVTAMSPLQYQKN 279 V+ DSQ R+++AI +++ +DQ LRI+++AR+V++S S+LHH FK VTA SPLQYQK Sbjct: 195 VVVADSQSQRISRAIEWLRKNFDQPLRIEELAREVNLSPSTLHHRFKAVTAFSPLQYQKQ 254 Query: 280 LRLQEARKLILTADASVATAAHRVGYESSSQFSREYSRLFGAPPLRDKRRWQE 332 LRLQEAR+L+L + A A++RVGYES SQFSREYSRLFGAPP RD R ++ Sbjct: 255 LRLQEARRLMLCDNLEAAAASYRVGYESPSQFSREYSRLFGAPPQRDIARLRQ 307 >ref|YP_004474891.1| AraC family transcriptional regulator [Pseudomonas fulva 12-X] gb|AEF22797.1| transcriptional regulator, AraC family [Pseudomonas fulva 12-X] Length = 303 Score = 289 bits (739), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 153/292 (52%), Positives = 202/292 (69%), Gaps = 9/292 (3%) Query: 41 QQELLQLLEHYTTGVEGMLETAIPNMEIYRITCPSGPKHAVQKPVFAVIAQGSKRIFVGD 100 Q+EL QL++ T EGM +T I + + T PS P + +P +IAQG K + +G Sbjct: 13 QRELAQLIQQ-KTPTEGMHDTLIDGLGLAYTTAPSLPMPTLYRPCLCIIAQGRKEVRLGA 71 Query: 101 EIYEYDPMHYLVASVDLPVVGKVMVTSPDEPYLGLRLELDTQEIGELI---GDENLPAAA 157 E Y YDP++YLVASV LPV G+V+ + ++PYL +RL++D I EL+ G LPA Sbjct: 72 EQYYYDPLNYLVASVTLPVTGQVIEATSEQPYLSVRLDIDPAVISELLSAAGPIGLPAP- 130 Query: 158 QVSEGAARGLYVNRLDVDLLDAVLRLLRLQERPADVPILAPMIRREILYRLLMNGQGALL 217 GA R L+V+RLD +LDAV+RLLRL + P D +LAP+ REI YRLL + QG L Sbjct: 131 ----GAKRALFVDRLDASMLDAVIRLLRLLDTPRDAAMLAPLALREIFYRLLRSPQGQRL 186 Query: 218 RQTVLQDSQMNRVAKAIRLIKEGYDQALRIDDIARDVHMSVSSLHHHFKLVTAMSPLQYQ 277 R+ V+ DSQ +R+A+AI I YD+ LRI+++AR+V++S S+LHH FK VTA+SPLQYQ Sbjct: 187 REIVMADSQSHRIARAIEWINRHYDKPLRIEELAREVNLSASTLHHRFKAVTALSPLQYQ 246 Query: 278 KNLRLQEARKLILTADASVATAAHRVGYESSSQFSREYSRLFGAPPLRDKRR 329 K LRLQEAR+L+ + A+A+ RVGYES SQFSREYSRLFGAPPLRD R Sbjct: 247 KQLRLQEARRLMFSEGMEAASASFRVGYESPSQFSREYSRLFGAPPLRDMHR 298