BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0068.p (340 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773846.1| tRNA-dihydrouridine synthase or NifR3-like p... 699 0.0 ref|YP_004754601.1| tRNA-dihydrouridine synthase B [Collimonas f... 579 e-163 ref|YP_001351996.1| tRNA-dihydrouridine synthase [Janthinobacter... 569 e-160 ref|ZP_08273353.1| tRNA-dihydrouridine synthase B [Oxalobacterac... 557 e-157 ref|YP_001098610.1| tRNA-dihydrouridine synthase B [Herminiimona... 521 e-146 ref|YP_725021.1| transfer RNA-dihydrouridine synthase [Ralstonia... 487 e-135 ref|YP_001795847.1| tRNA-dihydrouridine synthase b [Cupriavidus ... 486 e-135 ref|YP_004684371.1| tRNA-dihydrouridine synthase B [Cupriavidus ... 485 e-135 ref|ZP_03266349.1| TIM-barrel protein, nifR3 family [Burkholderi... 483 e-134 ref|YP_003606166.1| TIM-barrel protein, nifR3 family [Burkholder... 482 e-134 >ref|YP_003773846.1| tRNA-dihydrouridine synthase or NifR3-like protein [Herbaspirillum seropedicae SmR1] gb|ADJ61938.1| tRNA-dihydrouridine synthase protein or NifR3-like protein [Herbaspirillum seropedicae SmR1] Length = 340 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/340 (99%), Positives = 339/340 (99%) Query: 1 VNIGPYSLRNNVFVAPMAGVTDRPFRQLCKQLGAGYAVSEMAASDPRLWQSEKTSRRINH 60 +NIGPYSLRNNVFVAPMAGVTDRPFRQLCKQLGAGYAVSEMAASDPRLWQSEKTSRRINH Sbjct: 1 MNIGPYSLRNNVFVAPMAGVTDRPFRQLCKQLGAGYAVSEMAASDPRLWQSEKTSRRINH 60 Query: 61 DGEMEPKAVQIAGADPVMLADCAKYNVERGAQIIDINMGCPVKKVCNSWCGSALLQDEEL 120 DGEMEPKAVQIAGADPVMLADCAKYNVERGAQIIDINMGCPVKKVCNSWCGSALLQDEEL Sbjct: 61 DGEMEPKAVQIAGADPVMLADCAKYNVERGAQIIDINMGCPVKKVCNSWCGSALLQDEEL 120 Query: 121 VARILDAVVSAVDVPVTLKFRTGWNRANKNALKIAARAEAAGIAMLTLHGRTRADGYSGE 180 VARILDAVVSAVDVPVTLKFRTGWNRANKNALKIAARAEAAGIAMLTLHGRTRADGYSGE Sbjct: 121 VARILDAVVSAVDVPVTLKFRTGWNRANKNALKIAARAEAAGIAMLTLHGRTRADGYSGE 180 Query: 181 AEYETIAAVKAAVKIPVVANGDITTPEKARDVLLLTKADAVMVGRAAQGRPWIFREIDHF 240 AEYETIAAVKAAVKIPVVANGDITTPEKARDVLLLTKADAVMVGRAAQGRPWIFREIDHF Sbjct: 181 AEYETIAAVKAAVKIPVVANGDITTPEKARDVLLLTKADAVMVGRAAQGRPWIFREIDHF 240 Query: 241 LRTGEHLPAPLVSEVEHLMDEHLQAHYAFYGDYLGVRTARKHIGWYVRDLPGGEQFRRSM 300 LRTGEHLPAPLVSEVE LMDEHLQAHYAFYGDYLGVRTARKHIGWYVRDLPGGEQFRRSM Sbjct: 241 LRTGEHLPAPLVSEVEQLMDEHLQAHYAFYGDYLGVRTARKHIGWYVRDLPGGEQFRRSM 300 Query: 301 NRIEDCAQQLQAVRQFFASQAAFGERLQYGLAVDEVALAA 340 NRIEDCAQQLQAVRQFFASQAAFGERLQYGLAVDEVALAA Sbjct: 301 NRIEDCAQQLQAVRQFFASQAAFGERLQYGLAVDEVALAA 340 >ref|YP_004754601.1| tRNA-dihydrouridine synthase B [Collimonas fungivorans Ter331] gb|AEK63778.1| tRNA-dihydrouridine synthase B [Collimonas fungivorans Ter331] Length = 325 Score = 579 bits (1492), Expect = e-163, Method: Compositional matrix adjust. Identities = 272/319 (85%), Positives = 298/319 (93%) Query: 14 VAPMAGVTDRPFRQLCKQLGAGYAVSEMAASDPRLWQSEKTSRRINHDGEMEPKAVQIAG 73 +APMAGVTDRPFRQLCK+LGAGYAVSEMAAS+PRLWQ+EKTSRRINHDGEMEP+AVQIAG Sbjct: 1 MAPMAGVTDRPFRQLCKELGAGYAVSEMAASNPRLWQTEKTSRRINHDGEMEPRAVQIAG 60 Query: 74 ADPVMLADCAKYNVERGAQIIDINMGCPVKKVCNSWCGSALLQDEELVARILDAVVSAVD 133 ADP+MLA+CAKYNV+ GAQIIDINMGCPVKKVCNSWCGSALLQDE+LVA+IL+AVVSAVD Sbjct: 61 ADPLMLAECAKYNVDHGAQIIDINMGCPVKKVCNSWCGSALLQDEQLVAKILEAVVSAVD 120 Query: 134 VPVTLKFRTGWNRANKNALKIAARAEAAGIAMLTLHGRTRADGYSGEAEYETIAAVKAAV 193 VPVTLKFRTGW+R NKNAL IA A+A+GIAMLTLHGRTRADGYSG+AEY+TIAAVKAAV Sbjct: 121 VPVTLKFRTGWDRLNKNALNIARLAQASGIAMLTLHGRTRADGYSGDAEYQTIAAVKAAV 180 Query: 194 KIPVVANGDITTPEKARDVLLLTKADAVMVGRAAQGRPWIFREIDHFLRTGEHLPAPLVS 253 IPVVANGDI TPEKAR VL TKADA+MVGRAAQGRPWIFREI+H+LRTGE+LPAPLV+ Sbjct: 181 TIPVVANGDIATPEKARQVLEYTKADAIMVGRAAQGRPWIFREIEHYLRTGEYLPAPLVT 240 Query: 254 EVEHLMDEHLQAHYAFYGDYLGVRTARKHIGWYVRDLPGGEQFRRSMNRIEDCAQQLQAV 313 EV+ LMDEHL+AHY FYGDYLGVRTARKHIGWYVRDLPGGE FR+ MN +EDC QQL AV Sbjct: 241 EVQQLMDEHLRAHYGFYGDYLGVRTARKHIGWYVRDLPGGEAFRQRMNLLEDCGQQLAAV 300 Query: 314 RQFFASQAAFGERLQYGLA 332 FF SQ AFGERLQYG+A Sbjct: 301 NSFFESQFAFGERLQYGVA 319 >ref|YP_001351996.1| tRNA-dihydrouridine synthase [Janthinobacterium sp. Marseille] gb|ABR89628.1| tRNA-dihydrouridine synthase [Janthinobacterium sp. Marseille] Length = 338 Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust. Identities = 268/337 (79%), Positives = 304/337 (90%) Query: 1 VNIGPYSLRNNVFVAPMAGVTDRPFRQLCKQLGAGYAVSEMAASDPRLWQSEKTSRRINH 60 +NIGPYSL NNVFVAPMAGVTDRPFRQLCKQLGAGYAVSEMAAS+PRLW S+K++RR NH Sbjct: 1 MNIGPYSLPNNVFVAPMAGVTDRPFRQLCKQLGAGYAVSEMAASNPRLWASDKSTRRTNH 60 Query: 61 DGEMEPKAVQIAGADPVMLADCAKYNVERGAQIIDINMGCPVKKVCNSWCGSALLQDEEL 120 DGE+EPKAVQIAGADPV+LA+CAK+NV+RGAQIIDINMGCPVKKVCNSWCGSALLQ E L Sbjct: 61 DGEVEPKAVQIAGADPVLLAECAKFNVDRGAQIIDINMGCPVKKVCNSWCGSALLQHESL 120 Query: 121 VARILDAVVSAVDVPVTLKFRTGWNRANKNALKIAARAEAAGIAMLTLHGRTRADGYSGE 180 VA IL+AVV++V+VPVTLKFRTGW+RA+KNAL IA AE +GIAMLTLHGRTRADGYSG+ Sbjct: 121 VAEILEAVVASVNVPVTLKFRTGWDRAHKNALNIARIAEQSGIAMLTLHGRTRADGYSGD 180 Query: 181 AEYETIAAVKAAVKIPVVANGDITTPEKARDVLLLTKADAVMVGRAAQGRPWIFREIDHF 240 AEYETI AVKAAV IPVVANGDITTPEKAR VL +T ADA+M+GRAAQGRPWIFREI+H+ Sbjct: 181 AEYETITAVKAAVSIPVVANGDITTPEKARYVLDVTGADAIMIGRAAQGRPWIFREIEHY 240 Query: 241 LRTGEHLPAPLVSEVEHLMDEHLQAHYAFYGDYLGVRTARKHIGWYVRDLPGGEQFRRSM 300 LRTG +LPAP+++EV LMDEHL+AHYAFYG+YLGVRTARKHIGWYVR+L GGE FR+ M Sbjct: 241 LRTGTYLPAPMIAEVRTLMDEHLRAHYAFYGEYLGVRTARKHIGWYVRELVGGEAFRQQM 300 Query: 301 NRIEDCAQQLQAVRQFFASQAAFGERLQYGLAVDEVA 337 N++EDC QQL AV FF Q A GERLQY +++A Sbjct: 301 NKLEDCEQQLAAVNTFFELQLAHGERLQYRPTAEKLA 337 >ref|ZP_08273353.1| tRNA-dihydrouridine synthase B [Oxalobacteraceae bacterium IMCC9480] gb|EGF33185.1| tRNA-dihydrouridine synthase B [Oxalobacteraceae bacterium IMCC9480] Length = 348 Score = 557 bits (1436), Expect = e-157, Method: Compositional matrix adjust. Identities = 274/329 (83%), Positives = 298/329 (90%) Query: 1 VNIGPYSLRNNVFVAPMAGVTDRPFRQLCKQLGAGYAVSEMAASDPRLWQSEKTSRRINH 60 V +GPY L NNVFVAPMAGVTDRPFRQLCKQLGAGYAVSEMAAS+PRLWQ+EKTSRRINH Sbjct: 11 VKLGPYQLANNVFVAPMAGVTDRPFRQLCKQLGAGYAVSEMAASNPRLWQTEKTSRRINH 70 Query: 61 DGEMEPKAVQIAGADPVMLADCAKYNVERGAQIIDINMGCPVKKVCNSWCGSALLQDEEL 120 DGEM P+AVQIAGADP MLADCA++NVERGAQ+IDINMGCPVKKVCNSWCGSALLQDE L Sbjct: 71 DGEMAPRAVQIAGADPAMLADCARFNVERGAQVIDINMGCPVKKVCNSWCGSALLQDERL 130 Query: 121 VARILDAVVSAVDVPVTLKFRTGWNRANKNALKIAARAEAAGIAMLTLHGRTRADGYSGE 180 V +ILDAVV+AVDVPVTLKFRTGW+R +KNAL IA A++AGIAMLTLHGRTRADGY+G Sbjct: 131 VGQILDAVVAAVDVPVTLKFRTGWDRQHKNALNIARLAQSAGIAMLTLHGRTRADGYNGA 190 Query: 181 AEYETIAAVKAAVKIPVVANGDITTPEKARDVLLLTKADAVMVGRAAQGRPWIFREIDHF 240 AEYETIAAVKAAV IPVVANGDITTPEKAR VL +T ADA+M+GRAAQGRPWIFRE+ HF Sbjct: 191 AEYETIAAVKAAVTIPVVANGDITTPEKARHVLAVTGADAIMIGRAAQGRPWIFREVVHF 250 Query: 241 LRTGEHLPAPLVSEVEHLMDEHLQAHYAFYGDYLGVRTARKHIGWYVRDLPGGEQFRRSM 300 L+TG HL APLVSEV LMDEHL+AHYAFYG+YLGVRTARKHIGWYVRDL GGE FR+SM Sbjct: 251 LKTGTHLAAPLVSEVALLMDEHLRAHYAFYGEYLGVRTARKHIGWYVRDLAGGEDFRQSM 310 Query: 301 NRIEDCAQQLQAVRQFFASQAAFGERLQY 329 N +EDC QQL AV FF SQ +GERLQY Sbjct: 311 NLLEDCEQQLAAVNDFFESQIRYGERLQY 339 >ref|YP_001098610.1| tRNA-dihydrouridine synthase B [Herminiimonas arsenicoxydans] emb|CAL60481.1| tRNA-dihydrouridine synthase B [Herminiimonas arsenicoxydans] Length = 322 Score = 521 bits (1341), Expect = e-146, Method: Compositional matrix adjust. Identities = 257/313 (82%), Positives = 282/313 (90%) Query: 17 MAGVTDRPFRQLCKQLGAGYAVSEMAASDPRLWQSEKTSRRINHDGEMEPKAVQIAGADP 76 MAGVTDRPFRQLCKQLGAGYAVSEMAAS+PRLW ++K++RR NHDGE+EPKAVQIAGADP Sbjct: 1 MAGVTDRPFRQLCKQLGAGYAVSEMAASNPRLWATDKSTRRTNHDGEVEPKAVQIAGADP 60 Query: 77 VMLADCAKYNVERGAQIIDINMGCPVKKVCNSWCGSALLQDEELVARILDAVVSAVDVPV 136 +MLA+CAK+NV+RGAQIIDINMGCPVKKVCNSWCGSALLQ E LVA IL AVV+AVDVPV Sbjct: 61 LMLAECAKFNVDRGAQIIDINMGCPVKKVCNSWCGSALLQHESLVAEILQAVVAAVDVPV 120 Query: 137 TLKFRTGWNRANKNALKIAARAEAAGIAMLTLHGRTRADGYSGEAEYETIAAVKAAVKIP 196 TLKFRTGW+RA+KNAL IA AE +GIAMLTLHGRTRADGYSGEAEYE IAAVKAAV IP Sbjct: 121 TLKFRTGWDRAHKNALNIARIAEQSGIAMLTLHGRTRADGYSGEAEYEMIAAVKAAVSIP 180 Query: 197 VVANGDITTPEKARDVLLLTKADAVMVGRAAQGRPWIFREIDHFLRTGEHLPAPLVSEVE 256 VVANGDITTPEKA+ VL T ADA+M+GRAAQGRPWIFREI H+LRTG HLPAPL+SEV Sbjct: 181 VVANGDITTPEKAKFVLEATGADAIMIGRAAQGRPWIFREIVHYLRTGTHLPAPLISEVR 240 Query: 257 HLMDEHLQAHYAFYGDYLGVRTARKHIGWYVRDLPGGEQFRRSMNRIEDCAQQLQAVRQF 316 LMDEHL+AHYAFYG+YLGVRTARKHIGWYVR+L GE FR+ MNR+EDCAQQL AV +F Sbjct: 241 TLMDEHLRAHYAFYGEYLGVRTARKHIGWYVRELIDGEAFRQQMNRLEDCAQQLAAVNEF 300 Query: 317 FASQAAFGERLQY 329 F Q GERLQY Sbjct: 301 FELQLTHGERLQY 313 >ref|YP_725021.1| transfer RNA-dihydrouridine synthase [Ralstonia eutropha H16] emb|CAJ91653.1| transfer RNA-dihydrouridine synthase [Ralstonia eutropha H16] Length = 353 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 236/339 (69%), Positives = 273/339 (80%), Gaps = 5/339 (1%) Query: 1 VNIGPYSLRNNVFVAPMAGVTDRPFRQLCKQLGAGYAVSEMAASDPRLWQSEKTSRRINH 60 + IGP+ LRNN+FVAPMAGVTDRPFRQLCKQLGAGYAVSEM AS+ +LW+SEKT RR NH Sbjct: 1 MQIGPHQLRNNLFVAPMAGVTDRPFRQLCKQLGAGYAVSEMVASNAQLWKSEKTMRRANH 60 Query: 61 DGEMEPKAVQIAGADPVMLADCAKYNVERGAQIIDINMGCPVKKVCNSWCGSALLQDEEL 120 GE+EP AVQIAGA+P M+A+ A+YNV+RGAQIIDINMGCP KKVCN GSALLQ+E L Sbjct: 61 AGEVEPIAVQIAGAEPSMMAEAARYNVDRGAQIIDINMGCPAKKVCNVAAGSALLQNEPL 120 Query: 121 VARILDAVVSAVD--VPVTLKFRTGWNRANKNALKIAARAEAAGIAMLTLHGRTRADGYS 178 V RI+ AVV AV VPVTLK RTGWNR N+NAL+IA E AGI+MLT+HGRTRAD Y Sbjct: 121 VVRIVQAVVGAVGDRVPVTLKIRTGWNRENRNALRIAHMVEDAGISMLTIHGRTRADLYH 180 Query: 179 GEAEYETIAAVKAAVKIPVVANGDITTPEKARDVLLLTKADAVMVGRAAQGRPWIFREID 238 G AEYETIAAVKAAV IPVVANGDITTP+KA+ VL LT ADA+M+GRAAQGRPW+FREI+ Sbjct: 181 GNAEYETIAAVKAAVSIPVVANGDITTPQKAKQVLALTGADAIMIGRAAQGRPWLFREIE 240 Query: 239 HFLRTGEHLPAPLVSEVEHLMDEHLQAHYAFYGDYLGVRTARKHIGWYVRDLPGGEQFRR 298 HFL+TGE LP+P V+E+ +M+ HL+ HYAFYG++ GVRTARKHI WY R L G FR Sbjct: 241 HFLKTGEMLPSPEVAEIRAIMNAHLEDHYAFYGEFTGVRTARKHIAWYTRGLRGANLFRH 300 Query: 299 SMNRIEDCAQQLQAVRQFFASQAAFGERLQYGLAVDEVA 337 MN +E A+QL AV FF QA +RL Y VD+ A Sbjct: 301 RMNTLESTAEQLAAVNAFFDEQAQISDRLVY---VDDAA 336 >ref|YP_001795847.1| tRNA-dihydrouridine synthase b [Cupriavidus taiwanensis LMG 19424] emb|CAP63127.1| tRNA-dihydrouridine synthase B [Cupriavidus taiwanensis LMG 19424] Length = 353 Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust. Identities = 231/331 (69%), Positives = 272/331 (82%), Gaps = 2/331 (0%) Query: 1 VNIGPYSLRNNVFVAPMAGVTDRPFRQLCKQLGAGYAVSEMAASDPRLWQSEKTSRRINH 60 + IGP+ LRNN+FVAPMAGVTDRPFRQLCKQLGAGYAVSEM AS+ +LW+SEKT RR NH Sbjct: 1 MQIGPHQLRNNLFVAPMAGVTDRPFRQLCKQLGAGYAVSEMVASNAQLWKSEKTMRRANH 60 Query: 61 DGEMEPKAVQIAGADPVMLADCAKYNVERGAQIIDINMGCPVKKVCNSWCGSALLQDEEL 120 GE+EP AVQIAGA+P M+A+ A+YNV+RGAQIIDINMGCP KKVCN GSALLQ+E L Sbjct: 61 AGEVEPIAVQIAGAEPSMMAEAARYNVDRGAQIIDINMGCPAKKVCNVAAGSALLQNEPL 120 Query: 121 VARILDAVVSAVD--VPVTLKFRTGWNRANKNALKIAARAEAAGIAMLTLHGRTRADGYS 178 V RI++AVV+AV VPVTLK RTGWNR N+NAL++A + AGI+MLT+HGRTRAD Y Sbjct: 121 VVRIVEAVVAAVGDRVPVTLKIRTGWNRENRNALRVAQMVQDAGISMLTIHGRTRADLYH 180 Query: 179 GEAEYETIAAVKAAVKIPVVANGDITTPEKARDVLLLTKADAVMVGRAAQGRPWIFREID 238 G+AEYETIAAVKAAV IPVVANGDITTP+KA+ VL LT ADA+M+GRAAQGRPW+FREI+ Sbjct: 181 GDAEYETIAAVKAAVSIPVVANGDITTPQKAKQVLALTGADAIMIGRAAQGRPWLFREIE 240 Query: 239 HFLRTGEHLPAPLVSEVEHLMDEHLQAHYAFYGDYLGVRTARKHIGWYVRDLPGGEQFRR 298 HFL+TGE LP+P V+E+ +M+ HL+ HYAFYG++ GVRTARKHI WY R L G FR Sbjct: 241 HFLKTGEMLPSPEVAEIRAIMNAHLEDHYAFYGEFTGVRTARKHIAWYTRGLRGANLFRH 300 Query: 299 SMNRIEDCAQQLQAVRQFFASQAAFGERLQY 329 MN +E A+QL AV FF QA +RL Y Sbjct: 301 RMNTLESTAEQLAAVNAFFDEQAQISDRLVY 331 >ref|YP_004684371.1| tRNA-dihydrouridine synthase B [Cupriavidus necator N-1] gb|AEI75890.1| tRNA-dihydrouridine synthase B [Cupriavidus necator N-1] Length = 353 Score = 485 bits (1248), Expect = e-135, Method: Compositional matrix adjust. Identities = 235/339 (69%), Positives = 273/339 (80%), Gaps = 5/339 (1%) Query: 1 VNIGPYSLRNNVFVAPMAGVTDRPFRQLCKQLGAGYAVSEMAASDPRLWQSEKTSRRINH 60 + IGP+ LRNN+FVAPMAGVTDRPFRQLCKQLGAGYAVSEM AS+ +LW+SEKT RR NH Sbjct: 1 MQIGPHQLRNNLFVAPMAGVTDRPFRQLCKQLGAGYAVSEMVASNAQLWKSEKTMRRANH 60 Query: 61 DGEMEPKAVQIAGADPVMLADCAKYNVERGAQIIDINMGCPVKKVCNSWCGSALLQDEEL 120 GE+EP AVQIAGA+P M+A+ A+YNV+RGAQIIDINMGCP KKVCN GSALLQ+E L Sbjct: 61 AGEVEPIAVQIAGAEPSMMAEAARYNVDRGAQIIDINMGCPAKKVCNVAAGSALLQNEPL 120 Query: 121 VARILDAVVSAVD--VPVTLKFRTGWNRANKNALKIAARAEAAGIAMLTLHGRTRADGYS 178 V RI+ AVV AV VPVTLK RTGWNR N+NAL+IA E AGI+MLT+HGRTRAD Y Sbjct: 121 VVRIVQAVVGAVGDRVPVTLKIRTGWNRENRNALRIAHMVEDAGISMLTIHGRTRADLYH 180 Query: 179 GEAEYETIAAVKAAVKIPVVANGDITTPEKARDVLLLTKADAVMVGRAAQGRPWIFREID 238 G+AEYETIAAVKAAV IPVVANGDITTP+KA+ VL LT ADA+M+GRAAQGRPW+FREI+ Sbjct: 181 GDAEYETIAAVKAAVSIPVVANGDITTPQKAKQVLALTGADAIMIGRAAQGRPWLFREIE 240 Query: 239 HFLRTGEHLPAPLVSEVEHLMDEHLQAHYAFYGDYLGVRTARKHIGWYVRDLPGGEQFRR 298 HFL+TGE LP+P V+E+ +M+ HL+ HY FYG++ GVRTARKHI WY R L G FR Sbjct: 241 HFLKTGEMLPSPEVAEIRAIMNAHLEDHYDFYGEFTGVRTARKHIAWYTRGLRGANLFRH 300 Query: 299 SMNRIEDCAQQLQAVRQFFASQAAFGERLQYGLAVDEVA 337 MN +E A+QL AV FF QA +RL Y VD+ A Sbjct: 301 RMNTLESTAEQLAAVNAFFDEQAQISDRLVY---VDDAA 336 >ref|ZP_03266349.1| TIM-barrel protein, nifR3 family [Burkholderia sp. H160] gb|EEA02058.1| TIM-barrel protein, nifR3 family [Burkholderia sp. H160] Length = 353 Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust. Identities = 232/338 (68%), Positives = 278/338 (82%), Gaps = 8/338 (2%) Query: 3 IGPYSLRNNVFVAPMAGVTDRPFRQLCKQLGAGYAVSEMAASDPRLWQSEKTSRRINHDG 62 +GP++LRNN+FVAPMAGVTDRPFRQLCK+LGAGYAVSEM AS+ +LW+SEKT RR NH+G Sbjct: 4 LGPHNLRNNLFVAPMAGVTDRPFRQLCKRLGAGYAVSEMVASNAQLWKSEKTMRRANHEG 63 Query: 63 EMEPKAVQIAGADPVMLADCAKYNVERGAQIIDINMGCPVKKVCNSWCGSALLQDEELVA 122 E+EP AVQIAGADP M+A+ A+YNV GAQIIDINMGCP KKVCN GSALLQ+E LV Sbjct: 64 EVEPIAVQIAGADPDMMAEAARYNVANGAQIIDINMGCPAKKVCNVAAGSALLQNEPLVQ 123 Query: 123 RILDAVVSAVDV-----PVTLKFRTGWNRANKNALKIAARAEAAGIAMLTLHGRTRADGY 177 RI++AVV+AV V PVTLK RTGWNR NKNAL +A A+AAGI+MLT+HGRTRAD Y Sbjct: 124 RIVEAVVNAVGVGPDAVPVTLKIRTGWNRENKNALNVARLAQAAGISMLTVHGRTRADLY 183 Query: 178 SGEAEYETIAAVKAAVKIPVVANGDITTPEKARDVLLLTKADAVMVGRAAQGRPWIFREI 237 G+AEYETIAAVKAAV+IPVVANGDIT+P+KAR+VL T ADA+M+GRAAQGRPW+FREI Sbjct: 184 HGDAEYETIAAVKAAVRIPVVANGDITSPQKAREVLAATGADAIMIGRAAQGRPWLFREI 243 Query: 238 DHFLRTGEHLPAPLVSEVEHLMDEHLQAHYAFYGDYLGVRTARKHIGWYVRDLPGGEQFR 297 +HFL+TGE LP P + E++ +M+EHL+ HYAFYG++ GVRTARKHIGWY R L G FR Sbjct: 244 EHFLQTGELLPPPRIDEIQQVMNEHLEDHYAFYGEFTGVRTARKHIGWYTRGLSGANLFR 303 Query: 298 RSMNRIEDCAQQLQAVRQFFASQAAFGERLQYGLAVDE 335 MN ++ +QL AV +FF +Q A +RL Y +DE Sbjct: 304 HRMNTLDTTREQLLAVNEFFDAQKAISDRLVY---IDE 338 >ref|YP_003606166.1| TIM-barrel protein, nifR3 family [Burkholderia sp. CCGE1002] gb|ADG16655.1| TIM-barrel protein, nifR3 family [Burkholderia sp. CCGE1002] Length = 358 Score = 482 bits (1241), Expect = e-134, Method: Compositional matrix adjust. Identities = 233/338 (68%), Positives = 277/338 (81%), Gaps = 8/338 (2%) Query: 3 IGPYSLRNNVFVAPMAGVTDRPFRQLCKQLGAGYAVSEMAASDPRLWQSEKTSRRINHDG 62 +GP++LRNN+FVAPMAGVTDRPFRQLCK+LGAGYAVSEM AS+ +LW+SEKT RR NH+G Sbjct: 4 LGPHNLRNNLFVAPMAGVTDRPFRQLCKRLGAGYAVSEMVASNAQLWKSEKTMRRANHEG 63 Query: 63 EMEPKAVQIAGADPVMLADCAKYNVERGAQIIDINMGCPVKKVCNSWCGSALLQDEELVA 122 E+EP AVQIAGADP M+A+ A+YNV GAQIIDINMGCP KKVCN GSALLQ+E LV Sbjct: 64 EVEPIAVQIAGADPDMMAEAARYNVGNGAQIIDINMGCPAKKVCNVAAGSALLQNEPLVQ 123 Query: 123 RILDAVVSAVDV-----PVTLKFRTGWNRANKNALKIAARAEAAGIAMLTLHGRTRADGY 177 RI++AVV+AV V PVTLK RTGWNR NKNAL +A A+AAGI+MLT+HGRTRAD Y Sbjct: 124 RIVEAVVNAVGVGPDAVPVTLKIRTGWNRENKNALNVARLAQAAGISMLTVHGRTRADLY 183 Query: 178 SGEAEYETIAAVKAAVKIPVVANGDITTPEKARDVLLLTKADAVMVGRAAQGRPWIFREI 237 G+AEYETIAAVKAAV IPVVANGDIT+P+KAR+VL T ADA+M+GRAAQGRPW+FREI Sbjct: 184 HGDAEYETIAAVKAAVDIPVVANGDITSPQKAREVLAATGADAIMIGRAAQGRPWLFREI 243 Query: 238 DHFLRTGEHLPAPLVSEVEHLMDEHLQAHYAFYGDYLGVRTARKHIGWYVRDLPGGEQFR 297 +HFL+TGE LP P + E++ +M+EHL+ HYAFYG++ GVRTARKHIGWY R L G FR Sbjct: 244 EHFLQTGELLPPPRIDEIQQVMNEHLEDHYAFYGEFTGVRTARKHIGWYTRGLSGANLFR 303 Query: 298 RSMNRIEDCAQQLQAVRQFFASQAAFGERLQYGLAVDE 335 MN ++ +QL AV +FF +Q A +RL Y VDE Sbjct: 304 HRMNTLDTTREQLLAVNEFFDAQKAISDRLVY---VDE 338