BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0062.p (180 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773852.1| Holliday junction resolvasome, endonuclease ... 355 1e-96 ref|YP_004754598.1| Crossover junction endodeoxyribonuclease ruv... 305 1e-81 ref|YP_001098613.1| Holliday junction resolvase [Herminiimonas a... 303 7e-81 ref|YP_001351999.1| Holliday junction resolvase [Janthinobacteri... 300 7e-80 ref|ZP_08276356.1| Crossover junction endodeoxyribonuclease RuvC... 272 2e-71 ref|YP_001896958.1| Holliday junction resolvase [Burkholderia ph... 258 2e-67 ref|YP_294712.1| Holliday junction resolvase [Ralstonia eutropha... 258 2e-67 ref|YP_560369.1| Holliday junction resolvase [Burkholderia xenov... 258 3e-67 ref|YP_001795844.1| holliday junction resolvase [Cupriavidus tai... 258 4e-67 ref|YP_441796.2| Holliday junction resolvase [Burkholderia thail... 257 4e-67 >ref|YP_003773852.1| Holliday junction resolvasome, endonuclease subunit [Herbaspirillum seropedicae SmR1] gb|ADJ61944.1| Holliday junction resolvasome, endonuclease subunit protein [Herbaspirillum seropedicae SmR1] Length = 180 Score = 355 bits (912), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 180/180 (100%), Positives = 180/180 (100%) Query: 1 MKILGIDPGLRTTGFGVIHKQGNTLSYIASGTIKTPDGDLPSRLKVILASVGEVVKSYTP 60 MKILGIDPGLRTTGFGVIHKQGNTLSYIASGTIKTPDGDLPSRLKVILASVGEVVKSYTP Sbjct: 1 MKILGIDPGLRTTGFGVIHKQGNTLSYIASGTIKTPDGDLPSRLKVILASVGEVVKSYTP 60 Query: 61 DCAAIEKVFVNVNPHSTLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKAQ 120 DCAAIEKVFVNVNPHSTLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKAQ Sbjct: 61 DCAAIEKVFVNVNPHSTLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKAQ 120 Query: 121 VQEMVARLLKLPGLPGTDAADALGVAICHAHGGGVLSDLGALAPALARKGIRMRGGRLVG 180 VQEMVARLLKLPGLPGTDAADALGVAICHAHGGGVLSDLGALAPALARKGIRMRGGRLVG Sbjct: 121 VQEMVARLLKLPGLPGTDAADALGVAICHAHGGGVLSDLGALAPALARKGIRMRGGRLVG 180 >ref|YP_004754598.1| Crossover junction endodeoxyribonuclease ruvC [Collimonas fungivorans Ter331] gb|AEK63775.1| Crossover junction endodeoxyribonuclease ruvC [Collimonas fungivorans Ter331] Length = 180 Score = 305 bits (782), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 150/180 (83%), Positives = 163/180 (90%) Query: 1 MKILGIDPGLRTTGFGVIHKQGNTLSYIASGTIKTPDGDLPSRLKVILASVGEVVKSYTP 60 MKILGIDPGLRTTGFGVI KQGN LSYIASGTIKTPD DLP RLKVILASV EV+++Y P Sbjct: 1 MKILGIDPGLRTTGFGVIDKQGNKLSYIASGTIKTPDADLPQRLKVILASVSEVIRTYAP 60 Query: 61 DCAAIEKVFVNVNPHSTLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKAQ 120 DC+AIEKVFVNVNP STLLLGQARGAAICALV+ADL VAEYTALQ+KQAVAGHG+AQK Q Sbjct: 61 DCSAIEKVFVNVNPQSTLLLGQARGAAICALVSADLPVAEYTALQIKQAVAGHGKAQKQQ 120 Query: 121 VQEMVARLLKLPGLPGTDAADALGVAICHAHGGGVLSDLGALAPALARKGIRMRGGRLVG 180 VQ+MV RLL+LPGLPGTDAADAL VAICHAH G L+ L ALAP LA+KG+R+RGGRLVG Sbjct: 121 VQDMVQRLLQLPGLPGTDAADALAVAICHAHSGDALAHLSALAPGLAKKGLRVRGGRLVG 180 >ref|YP_001098613.1| Holliday junction resolvase [Herminiimonas arsenicoxydans] sp|A4G1U7.1|RUVC_HERAR RecName: Full=Crossover junction endodeoxyribonuclease ruvC; AltName: Full=Holliday junction nuclease ruvC; AltName: Full=Holliday junction resolvase ruvC emb|CAL60484.1| Crossover junction endodeoxyribonuclease ruvC (Holliday junction nuclease ruvC) (Holliday juction resolvase ruvC) [Herminiimonas arsenicoxydans] Length = 180 Score = 303 bits (776), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 152/180 (84%), Positives = 159/180 (88%) Query: 1 MKILGIDPGLRTTGFGVIHKQGNTLSYIASGTIKTPDGDLPSRLKVILASVGEVVKSYTP 60 MKILGIDPGLRTTGFGVI KQGN LSYIASGTIKTPD DLP RLK IL SV EV+ +Y P Sbjct: 1 MKILGIDPGLRTTGFGVIEKQGNKLSYIASGTIKTPDADLPQRLKTILVSVAEVIATYKP 60 Query: 61 DCAAIEKVFVNVNPHSTLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKAQ 120 DCAAIEKVFVNVNP STLLLGQARGAAICALV ADL VAEYTALQVKQAV G G+AQKAQ Sbjct: 61 DCAAIEKVFVNVNPQSTLLLGQARGAAICALVGADLFVAEYTALQVKQAVVGQGKAQKAQ 120 Query: 121 VQEMVARLLKLPGLPGTDAADALGVAICHAHGGGVLSDLGALAPALARKGIRMRGGRLVG 180 VQ+MV RLLKL GLPGTDAADALGVAICHAH G LS LGALAP LA+KG+R+RGGRLVG Sbjct: 121 VQDMVQRLLKLSGLPGTDAADALGVAICHAHSGEALSMLGALAPELAKKGLRVRGGRLVG 180 >ref|YP_001351999.1| Holliday junction resolvase [Janthinobacterium sp. Marseille] sp|A6SUQ2.1|RUVC_JANMA RecName: Full=Crossover junction endodeoxyribonuclease ruvC; AltName: Full=Holliday junction nuclease ruvC; AltName: Full=Holliday junction resolvase ruvC gb|ABR88445.1| crossover junction endodeoxyribonuclease [Janthinobacterium sp. Marseille] Length = 180 Score = 300 bits (767), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 151/180 (83%), Positives = 159/180 (88%) Query: 1 MKILGIDPGLRTTGFGVIHKQGNTLSYIASGTIKTPDGDLPSRLKVILASVGEVVKSYTP 60 MKILGIDPGLRTTGFGVI K GN L+YIASGTIKTPD DLP RLK IL+SV EV+ +Y P Sbjct: 1 MKILGIDPGLRTTGFGVIEKHGNKLTYIASGTIKTPDADLPQRLKTILSSVSEVIATYHP 60 Query: 61 DCAAIEKVFVNVNPHSTLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKAQ 120 DCAAIEKVFVNVNP STLLLGQARGAAICALV ADL VAEYTALQVKQAV G G+AQKAQ Sbjct: 61 DCAAIEKVFVNVNPQSTLLLGQARGAAICALVHADLLVAEYTALQVKQAVVGQGKAQKAQ 120 Query: 121 VQEMVARLLKLPGLPGTDAADALGVAICHAHGGGVLSDLGALAPALARKGIRMRGGRLVG 180 VQ+MV RLLKL GLPGTDAADALGVAICHAH G LS LGALAP LARKG+R+RGGRLVG Sbjct: 121 VQDMVQRLLKLSGLPGTDAADALGVAICHAHSGEALSVLGALAPELARKGLRVRGGRLVG 180 >ref|ZP_08276356.1| Crossover junction endodeoxyribonuclease RuvC [Oxalobacteraceae bacterium IMCC9480] gb|EGF30172.1| Crossover junction endodeoxyribonuclease RuvC [Oxalobacteraceae bacterium IMCC9480] Length = 180 Score = 272 bits (695), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 139/180 (77%), Positives = 151/180 (83%) Query: 1 MKILGIDPGLRTTGFGVIHKQGNTLSYIASGTIKTPDGDLPSRLKVILASVGEVVKSYTP 60 M+ILGIDPGLR TGFGVI K G+ LSYIASGTIKT D DLP+RLK ILA V EVV +Y P Sbjct: 1 MRILGIDPGLRITGFGVIEKHGHKLSYIASGTIKTLDIDLPARLKTILAGVSEVVATYRP 60 Query: 61 DCAAIEKVFVNVNPHSTLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKAQ 120 DC+AIEKVFVNVNP STLLLGQARGAAICALV+ADL VAEYTALQVKQAV G G+AQK Q Sbjct: 61 DCSAIEKVFVNVNPQSTLLLGQARGAAICALVSADLLVAEYTALQVKQAVVGQGKAQKEQ 120 Query: 121 VQEMVARLLKLPGLPGTDAADALGVAICHAHGGGVLSDLGALAPALARKGIRMRGGRLVG 180 VQ+MV RLL L G P DAADALGVAICHAH VL+ LG LAP LA+KG+R+R GRLVG Sbjct: 121 VQDMVQRLLMLSGKPTADAADALGVAICHAHNSDVLAILGGLAPGLAKKGLRVRKGRLVG 180 >ref|YP_001896958.1| Holliday junction resolvase [Burkholderia phytofirmans PsJN] sp|B2SYJ9.1|RUVC_BURPP RecName: Full=Crossover junction endodeoxyribonuclease ruvC; AltName: Full=Holliday junction nuclease ruvC; AltName: Full=Holliday junction resolvase ruvC gb|ACD17734.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia phytofirmans PsJN] Length = 180 Score = 258 bits (660), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 126/180 (70%), Positives = 150/180 (83%) Query: 1 MKILGIDPGLRTTGFGVIHKQGNTLSYIASGTIKTPDGDLPSRLKVILASVGEVVKSYTP 60 M+ILGIDPGLR TGFGVI + G+TLSY+ASG IKT D DLPSRL I + +++ ++P Sbjct: 1 MRILGIDPGLRVTGFGVIDQSGHTLSYVASGVIKTADADLPSRLGTIFEGISTLIRQHSP 60 Query: 61 DCAAIEKVFVNVNPHSTLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKAQ 120 D +AIEKVFVNVNP STLLLGQARGAAIC LVA+ + VAEYTALQ+KQAV G+GRA K Q Sbjct: 61 DQSAIEKVFVNVNPQSTLLLGQARGAAICGLVASGVPVAEYTALQLKQAVVGYGRATKEQ 120 Query: 121 VQEMVARLLKLPGLPGTDAADALGVAICHAHGGGVLSDLGALAPALARKGIRMRGGRLVG 180 +Q+MV RLL L G+PGTDAADALG+AICHAHGG LS LG +AP+LA+KG+R+R GRLVG Sbjct: 121 MQQMVVRLLNLSGVPGTDAADALGMAICHAHGGTTLSTLGGIAPSLAKKGLRVRRGRLVG 180 >ref|YP_294712.1| Holliday junction resolvase [Ralstonia eutropha JMP134] sp|Q475R5.1|RUVC_RALEJ RecName: Full=Crossover junction endodeoxyribonuclease ruvC; AltName: Full=Holliday junction nuclease ruvC; AltName: Full=Holliday junction resolvase ruvC gb|AAZ59868.1| Holliday junction endonuclease RuvC [Ralstonia eutropha JMP134] Length = 181 Score = 258 bits (660), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 130/181 (71%), Positives = 145/181 (80%), Gaps = 1/181 (0%) Query: 1 MKILGIDPGLRTTGFGVIHKQGNTLSYIASGTIKTP-DGDLPSRLKVILASVGEVVKSYT 59 M+ILGIDPGLRTTGFGV+ K GN LSYIASGTIK+ + DLP+RLK + + EV ++YT Sbjct: 1 MRILGIDPGLRTTGFGVLEKHGNKLSYIASGTIKSNGETDLPARLKTLFDGISEVARTYT 60 Query: 60 PDCAAIEKVFVNVNPHSTLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKA 119 PDCAAIEKVFVNVNP STLLLGQARGAAIC LV L V EYTALQ+K AV G+GRA K Sbjct: 61 PDCAAIEKVFVNVNPQSTLLLGQARGAAICGLVGQGLPVFEYTALQLKVAVVGYGRANKE 120 Query: 120 QVQEMVARLLKLPGLPGTDAADALGVAICHAHGGGVLSDLGALAPALARKGIRMRGGRLV 179 QVQEMV RLL LPG P TDAADALGVAICHA+GG L L LAP L RKG+R+R GRL+ Sbjct: 121 QVQEMVMRLLSLPGRPSTDAADALGVAICHANGGDTLGTLSGLAPELVRKGMRVRRGRLI 180 Query: 180 G 180 G Sbjct: 181 G 181 >ref|YP_560369.1| Holliday junction resolvase [Burkholderia xenovorans LB400] ref|ZP_06840186.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia sp. Ch1-1] sp|Q13UC2.1|RUVC_BURXL RecName: Full=Crossover junction endodeoxyribonuclease ruvC; AltName: Full=Holliday junction nuclease ruvC; AltName: Full=Holliday junction resolvase ruvC gb|ABE32317.1| Crossover junction endodeoxyribonuclease RuvC [Burkholderia xenovorans LB400] gb|EFG72468.1| crossover junction endodeoxyribonuclease RuvC [Burkholderia sp. Ch1-1] Length = 180 Score = 258 bits (658), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 126/180 (70%), Positives = 149/180 (82%) Query: 1 MKILGIDPGLRTTGFGVIHKQGNTLSYIASGTIKTPDGDLPSRLKVILASVGEVVKSYTP 60 M+ILGIDPGLR TGFGVI + G+TLSY+ASG IKT D DLPSRL I + +++ ++P Sbjct: 1 MRILGIDPGLRVTGFGVIDQSGHTLSYVASGVIKTADADLPSRLGTIFEGISTLIRQHSP 60 Query: 61 DCAAIEKVFVNVNPHSTLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKAQ 120 D +AIEKVFVNVNP STLLLGQARGAAIC LVA + VAEYTALQ+KQAV G+GRA K Q Sbjct: 61 DQSAIEKVFVNVNPQSTLLLGQARGAAICGLVAGGVPVAEYTALQLKQAVVGYGRATKEQ 120 Query: 121 VQEMVARLLKLPGLPGTDAADALGVAICHAHGGGVLSDLGALAPALARKGIRMRGGRLVG 180 +Q+MV RLL L G+PGTDAADALG+AICHAHGG LS LG +AP+LA+KG+R+R GRLVG Sbjct: 121 MQQMVVRLLNLSGVPGTDAADALGMAICHAHGGTTLSTLGGIAPSLAKKGLRVRRGRLVG 180 >ref|YP_001795844.1| holliday junction resolvase [Cupriavidus taiwanensis LMG 19424] sp|B2AH75.1|RUVC_CUPTR RecName: Full=Crossover junction endodeoxyribonuclease ruvC; AltName: Full=Holliday junction nuclease ruvC; AltName: Full=Holliday junction resolvase ruvC emb|CAP63124.1| endodeoxyribonuclease, subunit C of RuvABC Holliday junction resolvasome [Cupriavidus taiwanensis LMG 19424] Length = 181 Score = 258 bits (658), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 131/181 (72%), Positives = 146/181 (80%), Gaps = 1/181 (0%) Query: 1 MKILGIDPGLRTTGFGVIHKQGNTLSYIASGTIKTP-DGDLPSRLKVILASVGEVVKSYT 59 M+ILGIDPGLRTTGFGVI KQGN L+YIASGTIK+ + +LP RLK + + EV ++Y Sbjct: 1 MRILGIDPGLRTTGFGVIEKQGNKLAYIASGTIKSDGNANLPERLKTLYDGISEVSRTYA 60 Query: 60 PDCAAIEKVFVNVNPHSTLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKA 119 PDCAAIEKVFVNVNP STLLLGQARGAAIC LV L V EYTALQ+K AV G+GRA KA Sbjct: 61 PDCAAIEKVFVNVNPQSTLLLGQARGAAICGLVGYGLPVFEYTALQLKVAVVGYGRANKA 120 Query: 120 QVQEMVARLLKLPGLPGTDAADALGVAICHAHGGGVLSDLGALAPALARKGIRMRGGRLV 179 QVQEMV RLL LPG PG+DAADALGVAICHA+GG L L LAP L RKG+R+R GRLV Sbjct: 121 QVQEMVTRLLMLPGQPGSDAADALGVAICHANGGDTLGTLAGLAPDLVRKGMRVRRGRLV 180 Query: 180 G 180 G Sbjct: 181 G 181 >ref|YP_441796.2| Holliday junction resolvase [Burkholderia thailandensis E264] ref|ZP_02373491.1| Holliday junction resolvase [Burkholderia thailandensis TXDOH] ref|ZP_02387354.1| Holliday junction resolvase [Burkholderia thailandensis Bt4] ref|ZP_05586224.1| Holliday junction resolvase [Burkholderia thailandensis E264] sp|Q2SZ53.2|RUVC_BURTA RecName: Full=Crossover junction endodeoxyribonuclease ruvC; AltName: Full=Holliday junction nuclease ruvC; AltName: Full=Holliday junction resolvase ruvC Length = 180 Score = 257 bits (657), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 129/180 (71%), Positives = 148/180 (82%) Query: 1 MKILGIDPGLRTTGFGVIHKQGNTLSYIASGTIKTPDGDLPSRLKVILASVGEVVKSYTP 60 M+ILGIDPGLR TGFGVI G+ L+Y+ASG IKTP DLP+RL I V +++ +TP Sbjct: 1 MRILGIDPGLRVTGFGVIDVSGHRLAYVASGVIKTPTADLPTRLGTIYDGVSTLIREHTP 60 Query: 61 DCAAIEKVFVNVNPHSTLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKAQ 120 D AAIEKVFVNVNP STLLLGQARGAAIC LV+ L VAEYTALQ+KQAV G+GRA K Q Sbjct: 61 DQAAIEKVFVNVNPQSTLLLGQARGAAICGLVSGGLPVAEYTALQLKQAVVGYGRATKEQ 120 Query: 121 VQEMVARLLKLPGLPGTDAADALGVAICHAHGGGVLSDLGALAPALARKGIRMRGGRLVG 180 +QEMVARLL L GLPGTDAADALG+AICHAHGG L+ LG +APALA+KG+R+R GRLVG Sbjct: 121 MQEMVARLLSLSGLPGTDAADALGMAICHAHGGNTLNTLGGIAPALAKKGLRVRRGRLVG 180