BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0060.p (192 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773854.1| Holliday junction DNA resolvase DNA-binding ... 379 e-103 sp|A4G1U8.2|RUVA_HERAR RecName: Full=Holliday junction ATP-depen... 308 3e-82 ref|YP_004751366.1| Holliday junction DNA helicase RuvA [Collimo... 299 1e-79 ref|YP_001352000.1| RuvA holliday junction DNA helicase [Janthin... 296 1e-78 ref|YP_294710.1| Holliday junction DNA helicase motor protein [R... 290 8e-77 ref|ZP_08273367.1| Holliday junction DNA helicase RuvA [Oxalobac... 286 1e-75 ref|YP_560370.1| Holliday junction DNA helicase motor protein [B... 278 3e-73 ref|YP_001896960.1| Holliday junction DNA helicase RuvA [Burkhol... 278 4e-73 emb|CCA81196.1| subunit A of RuvABC Holliday junction resolvasom... 275 2e-72 ref|YP_002980370.1| Holliday junction DNA helicase RuvA [Ralston... 275 3e-72 >ref|YP_003773854.1| Holliday junction DNA resolvase DNA-binding subunit [Herbaspirillum seropedicae SmR1] gb|ADJ61946.1| Holliday junction DNA resolvase, DNA-binding subunit protein [Herbaspirillum seropedicae SmR1] Length = 192 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 192/192 (100%), Positives = 192/192 (100%) Query: 1 MIGRLSGILLEKLPPNLLVDCQGVGYEVAVPMSTYYNLPALGEKVTLLTHLAIREDAHIL 60 MIGRLSGILLEKLPPNLLVDCQGVGYEVAVPMSTYYNLPALGEKVTLLTHLAIREDAHIL Sbjct: 1 MIGRLSGILLEKLPPNLLVDCQGVGYEVAVPMSTYYNLPALGEKVTLLTHLAIREDAHIL 60 Query: 61 FGFGTAEERNTFKELIKISGVGARTALSILSGMSVADLAQAVTLQEAGRLTRVPGIGKKT 120 FGFGTAEERNTFKELIKISGVGARTALSILSGMSVADLAQAVTLQEAGRLTRVPGIGKKT Sbjct: 61 FGFGTAEERNTFKELIKISGVGARTALSILSGMSVADLAQAVTLQEAGRLTRVPGIGKKT 120 Query: 121 AERLLLELKGKLGADLGAVAGVVHSDASADILNALLALGYSDKEATLAMKQVPKDSTVSD 180 AERLLLELKGKLGADLGAVAGVVHSDASADILNALLALGYSDKEATLAMKQVPKDSTVSD Sbjct: 121 AERLLLELKGKLGADLGAVAGVVHSDASADILNALLALGYSDKEATLAMKQVPKDSTVSD 180 Query: 181 GIKLALKALSKG 192 GIKLALKALSKG Sbjct: 181 GIKLALKALSKG 192 >sp|A4G1U8.2|RUVA_HERAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA emb|CAL60485.2| Holliday junction DNA helicase ruvA [Herminiimonas arsenicoxydans] Length = 192 Score = 308 bits (789), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 161/191 (84%), Positives = 176/191 (92%) Query: 1 MIGRLSGILLEKLPPNLLVDCQGVGYEVAVPMSTYYNLPALGEKVTLLTHLAIREDAHIL 60 MIGRLSG+LLEK PP LLVDC GVGYEV VPMST+YNLP LGEKV LLTHL +REDAHIL Sbjct: 1 MIGRLSGVLLEKNPPQLLVDCNGVGYEVNVPMSTFYNLPGLGEKVALLTHLTVREDAHIL 60 Query: 61 FGFGTAEERNTFKELIKISGVGARTALSILSGMSVADLAQAVTLQEAGRLTRVPGIGKKT 120 FGFGTAEERN FK+L+KI+G+GARTALSILSGMSVADL+ A+TLQEAGRLT++PGIGKKT Sbjct: 61 FGFGTAEERNVFKQLVKITGIGARTALSILSGMSVADLSNAITLQEAGRLTKIPGIGKKT 120 Query: 121 AERLLLELKGKLGADLGAVAGVVHSDASADILNALLALGYSDKEATLAMKQVPKDSTVSD 180 AERLLLELKGKLGADLGA GV+HSDA++DILNALLALGYSDKEA LAMKQVP + VSD Sbjct: 121 AERLLLELKGKLGADLGAAGGVIHSDATSDILNALLALGYSDKEALLAMKQVPAGTGVSD 180 Query: 181 GIKLALKALSK 191 GIKLALKALSK Sbjct: 181 GIKLALKALSK 191 >ref|YP_004751366.1| Holliday junction DNA helicase RuvA [Collimonas fungivorans Ter331] gb|AEK60543.1| Holliday junction DNA helicase RuvA [Collimonas fungivorans Ter331] Length = 192 Score = 299 bits (766), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 160/191 (83%), Positives = 173/191 (90%) Query: 1 MIGRLSGILLEKLPPNLLVDCQGVGYEVAVPMSTYYNLPALGEKVTLLTHLAIREDAHIL 60 MIGRLSGILLEK PP LL+DC GVGYEV VPMST+YNLP LGEKV LLTHLAIREDAH+L Sbjct: 1 MIGRLSGILLEKNPPQLLIDCNGVGYEVGVPMSTFYNLPGLGEKVALLTHLAIREDAHVL 60 Query: 61 FGFGTAEERNTFKELIKISGVGARTALSILSGMSVADLAQAVTLQEAGRLTRVPGIGKKT 120 +GFGTAEERN FK+LIKISGVGARTALSILSGMSV DLAQA+T+QEAGRLT+VPGIGKKT Sbjct: 61 YGFGTAEERNVFKQLIKISGVGARTALSILSGMSVQDLAQAITMQEAGRLTKVPGIGKKT 120 Query: 121 AERLLLELKGKLGADLGAVAGVVHSDASADILNALLALGYSDKEATLAMKQVPKDSTVSD 180 AERLLLELKGKLGADLG V SD S DILNAL+ALGYSDKEA LA+KQ+P D++VSD Sbjct: 121 AERLLLELKGKLGADLGPVGSHHASDISGDILNALIALGYSDKEAMLALKQLPADASVSD 180 Query: 181 GIKLALKALSK 191 GIKLALKALSK Sbjct: 181 GIKLALKALSK 191 >ref|YP_001352000.1| RuvA holliday junction DNA helicase [Janthinobacterium sp. Marseille] sp|A6SUQ3.1|RUVA_JANMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gb|ABR88748.1| RuvA holliday junction DNA helicase [Janthinobacterium sp. Marseille] Length = 191 Score = 296 bits (758), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 157/191 (82%), Positives = 175/191 (91%), Gaps = 1/191 (0%) Query: 1 MIGRLSGILLEKLPPNLLVDCQGVGYEVAVPMSTYYNLPALGEKVTLLTHLAIREDAHIL 60 MIGRLSG+LLEK PP LLVDC GVGYEV VPMST+YNLP LG+KV LLTHL +REDAHIL Sbjct: 1 MIGRLSGVLLEKNPPQLLVDCNGVGYEVNVPMSTFYNLPGLGDKVVLLTHLTVREDAHIL 60 Query: 61 FGFGTAEERNTFKELIKISGVGARTALSILSGMSVADLAQAVTLQEAGRLTRVPGIGKKT 120 FGFGT EERN FK+L+KI+G+GARTALSILSGMSVADLAQA+T+QEAGRLT++PGIGKKT Sbjct: 61 FGFGTNEERNVFKQLVKITGIGARTALSILSGMSVADLAQAITMQEAGRLTKIPGIGKKT 120 Query: 121 AERLLLELKGKLGADLGAVAGVVHSDASADILNALLALGYSDKEATLAMKQVPKDSTVSD 180 AERLLLELKGKLGADLG VAG V +DA++DILNALLALGYSDKEA LA+KQVP + VSD Sbjct: 121 AERLLLELKGKLGADLG-VAGAVATDATSDILNALLALGYSDKEAMLALKQVPAGTGVSD 179 Query: 181 GIKLALKALSK 191 GIKLALK+LSK Sbjct: 180 GIKLALKSLSK 190 >ref|YP_294710.1| Holliday junction DNA helicase motor protein [Ralstonia eutropha JMP134] sp|Q475R7.1|RUVA_RALEJ RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gb|AAZ59866.1| Holliday junction DNA helicase subunit RuvA [Ralstonia eutropha JMP134] Length = 193 Score = 290 bits (742), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 144/193 (74%), Positives = 170/193 (88%), Gaps = 3/193 (1%) Query: 1 MIGRLSGILLEKLPPNLLVDCQGVGYEVAVPMSTYYNLPALGEKVTLLTHLAIREDAHIL 60 MIGR++G L+EK PP+LLVDC GVGYE+ VPMST+YNLPA G+ VTLLT L +REDAH+L Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGQPVTLLTQLIVREDAHLL 60 Query: 61 FGFGTAEERNTFKELIKISGVGARTALSILSGMSVADLAQAVTLQEAGRLTRVPGIGKKT 120 +GFG+A ERNTF+ELIKI+G+GAR AL++LSGMSV++LAQA+TLQEAGRLTRVPGIGKKT Sbjct: 61 YGFGSAAERNTFRELIKITGIGARMALAVLSGMSVSELAQAITLQEAGRLTRVPGIGKKT 120 Query: 121 AERLLLELKGKLGADLGAVAGV--VHSDASADILNALLALGYSDKEATLAMKQVPKDSTV 178 AERL+LELKGKLGA+LG G VH D++ DILNALLALGYS+KEA A+KQVP + V Sbjct: 121 AERLMLELKGKLGAELGHAPGAAPVH-DSAVDILNALLALGYSEKEAATAIKQVPAGTGV 179 Query: 179 SDGIKLALKALSK 191 SDGIKLALKALSK Sbjct: 180 SDGIKLALKALSK 192 >ref|ZP_08273367.1| Holliday junction DNA helicase RuvA [Oxalobacteraceae bacterium IMCC9480] gb|EGF33171.1| Holliday junction DNA helicase RuvA [Oxalobacteraceae bacterium IMCC9480] Length = 192 Score = 286 bits (732), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 155/192 (80%), Positives = 167/192 (86%) Query: 1 MIGRLSGILLEKLPPNLLVDCQGVGYEVAVPMSTYYNLPALGEKVTLLTHLAIREDAHIL 60 MIGRLSG LLEK PP LLVDC GVGYEV V MST+YNLPALGEK+ LLT +REDAH+L Sbjct: 1 MIGRLSGTLLEKNPPQLLVDCHGVGYEVGVSMSTFYNLPALGEKIVLLTQQIVREDAHLL 60 Query: 61 FGFGTAEERNTFKELIKISGVGARTALSILSGMSVADLAQAVTLQEAGRLTRVPGIGKKT 120 FGFGTAEERN F++LIKI+GVG R AL+ILSGMSVA+LAQA+TLQE GRLT+VPG+GKKT Sbjct: 61 FGFGTAEERNVFRQLIKIAGVGPRMALAILSGMSVAELAQAITLQETGRLTKVPGVGKKT 120 Query: 121 AERLLLELKGKLGADLGAVAGVVHSDASADILNALLALGYSDKEATLAMKQVPKDSTVSD 180 AERLLLELKGKLGADLG V GV D S DILNALLALGYSDKEA LAMKQVP S VSD Sbjct: 121 AERLLLELKGKLGADLGIVGGVALPDGSGDILNALLALGYSDKEAMLAMKQVPAGSGVSD 180 Query: 181 GIKLALKALSKG 192 GIKLALKALSKG Sbjct: 181 GIKLALKALSKG 192 >ref|YP_560370.1| Holliday junction DNA helicase motor protein [Burkholderia xenovorans LB400] ref|ZP_06840187.1| Holliday junction DNA helicase RuvA [Burkholderia sp. Ch1-1] sp|Q13UC1.1|RUVA_BURXL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gb|ABE32318.1| DNA recombination protein, RuvA [Burkholderia xenovorans LB400] gb|EFG72469.1| Holliday junction DNA helicase RuvA [Burkholderia sp. Ch1-1] Length = 193 Score = 278 bits (711), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 139/193 (72%), Positives = 166/193 (86%), Gaps = 1/193 (0%) Query: 1 MIGRLSGILLEKLPPNLLVDCQGVGYEVAVPMSTYYNLPALGEKVTLLTHLAIREDAHIL 60 MIGR++G+LLEK PP+LLVDC GVGYEV VPMST+YNLP+ GE+V LLT + +REDAH+L Sbjct: 1 MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSTGERVVLLTQMIVREDAHLL 60 Query: 61 FGFGTAEERNTFKELIKISGVGARTALSILSGMSVADLAQAVTLQEAGRLTRVPGIGKKT 120 +GFGTAEER+TF+EL+KISG+GAR AL++LSGMSV +LAQ VT+Q+A RLTRVPGIGKKT Sbjct: 61 YGFGTAEERSTFRELLKISGIGARMALAVLSGMSVHELAQTVTMQDAARLTRVPGIGKKT 120 Query: 121 AERLLLELKGKLGADL-GAVAGVVHSDASADILNALLALGYSDKEATLAMKQVPKDSTVS 179 AERLLLELKGK+GADL SD ++DILNALLALGYS+KEA A+K VP + VS Sbjct: 121 AERLLLELKGKIGADLGAMAGAASASDHASDILNALLALGYSEKEALAAVKNVPAGTGVS 180 Query: 180 DGIKLALKALSKG 192 +GIKLALKALSKG Sbjct: 181 EGIKLALKALSKG 193 >ref|YP_001896960.1| Holliday junction DNA helicase RuvA [Burkholderia phytofirmans PsJN] sp|B2SYK1.1|RUVA_BURPP RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA gb|ACD17736.1| Holliday junction DNA helicase RuvA [Burkholderia phytofirmans PsJN] Length = 193 Score = 278 bits (710), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 138/193 (71%), Positives = 166/193 (86%), Gaps = 1/193 (0%) Query: 1 MIGRLSGILLEKLPPNLLVDCQGVGYEVAVPMSTYYNLPALGEKVTLLTHLAIREDAHIL 60 MIGR++G+LLEK PP+LL+DC GVGYEV VPMST+YNLP+ GE+V LLT + +REDAH+L Sbjct: 1 MIGRIAGVLLEKNPPHLLIDCNGVGYEVDVPMSTFYNLPSTGERVVLLTQMIVREDAHLL 60 Query: 61 FGFGTAEERNTFKELIKISGVGARTALSILSGMSVADLAQAVTLQEAGRLTRVPGIGKKT 120 +GFGTAEER+TF+EL+KISG+GAR AL++LSGMSV +LAQ VT+Q+A RLTRVPGIGKKT Sbjct: 61 YGFGTAEERSTFRELLKISGIGARMALAVLSGMSVHELAQTVTMQDAARLTRVPGIGKKT 120 Query: 121 AERLLLELKGKLGADL-GAVAGVVHSDASADILNALLALGYSDKEATLAMKQVPKDSTVS 179 AERLLLELKGK+GADL SD ++DILNALLALGYS+KEA A+K VP + VS Sbjct: 121 AERLLLELKGKIGADLGAMAGAASASDHASDILNALLALGYSEKEALTAVKNVPAGTGVS 180 Query: 180 DGIKLALKALSKG 192 +GIKLALKALSKG Sbjct: 181 EGIKLALKALSKG 193 >emb|CCA81196.1| subunit A of RuvABC Holliday junction resolvasome, regulatory subunit [blood disease bacterium R229] emb|CCA88874.1| subunit A of RuvABC Holliday junction resolvasome, regulatory subunit [Ralstonia syzygii R24] Length = 193 Score = 275 bits (704), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 149/193 (77%), Positives = 170/193 (88%), Gaps = 1/193 (0%) Query: 1 MIGRLSGILLEKLPPNLLVDCQGVGYEVAVPMSTYYNLPALGEKVTLLTHLAIREDAHIL 60 MIGR++G L+EK PP+LLVDC GVGYE+ VPMST+YNLPA GEKV LLT +REDAH+L Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVVLLTQQIVREDAHLL 60 Query: 61 FGFGTAEERNTFKELIKISGVGARTALSILSGMSVADLAQAVTLQEAGRLTRVPGIGKKT 120 +GFGTA ER TF++LIKISG+GAR AL++LSGMSVA+LAQAVTLQEAGRLTR+PGIGKKT Sbjct: 61 YGFGTAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120 Query: 121 AERLLLELKGKLGADLGAV-AGVVHSDASADILNALLALGYSDKEATLAMKQVPKDSTVS 179 AERLLLELKGKLGADLGAV G SD + D+LNALLALGYSDKEA LA+KQVP + VS Sbjct: 121 AERLLLELKGKLGADLGAVPGGPAMSDDAVDVLNALLALGYSDKEAALAIKQVPTGTGVS 180 Query: 180 DGIKLALKALSKG 192 +GIKLALKALSKG Sbjct: 181 EGIKLALKALSKG 193 >ref|YP_002980370.1| Holliday junction DNA helicase RuvA [Ralstonia pickettii 12D] gb|ACS61698.1| Holliday junction DNA helicase RuvA [Ralstonia pickettii 12D] Length = 193 Score = 275 bits (703), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 149/193 (77%), Positives = 170/193 (88%), Gaps = 1/193 (0%) Query: 1 MIGRLSGILLEKLPPNLLVDCQGVGYEVAVPMSTYYNLPALGEKVTLLTHLAIREDAHIL 60 MIGR++G L+EK PP+LLVDC GVGYE+ VPMST+YNLPA GEKV LLT +REDAH+L Sbjct: 1 MIGRIAGTLIEKNPPHLLVDCHGVGYEIDVPMSTFYNLPATGEKVVLLTQQIVREDAHLL 60 Query: 61 FGFGTAEERNTFKELIKISGVGARTALSILSGMSVADLAQAVTLQEAGRLTRVPGIGKKT 120 +GFGTA ER TF++LIKISG+GAR AL++LSGMSVA+LAQAVTLQEAGRLTR+PGIGKKT Sbjct: 61 YGFGTAAERETFRQLIKISGIGARIALAVLSGMSVAELAQAVTLQEAGRLTRIPGIGKKT 120 Query: 121 AERLLLELKGKLGADLGAV-AGVVHSDASADILNALLALGYSDKEATLAMKQVPKDSTVS 179 AERLLLELKGKLGADLGAV G SD + D+LNALLALGYSDKEA LA+KQVP + VS Sbjct: 121 AERLLLELKGKLGADLGAVPGGPAVSDDAVDVLNALLALGYSDKEAALAIKQVPAGTGVS 180 Query: 180 DGIKLALKALSKG 192 +GIKLALKALSKG Sbjct: 181 EGIKLALKALSKG 193