BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0050.p (597 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_294249.1| OmpA [Ralstonia eutropha JMP134] >gi|72117142|g... 390 e-106 ref|YP_004683877.1| OmpA protein [Cupriavidus necator N-1] >gi|3... 375 e-102 gb|EFV82666.1| hypothetical protein HMPREF0005_00359 [Achromobac... 273 8e-71 ref|YP_003743304.1| OmpA family protein [Erwinia billingiae Eb66... 184 4e-44 ref|ZP_03829090.1| putative porin [Pectobacterium carotovorum su... 181 3e-43 ref|YP_004393568.1| putative porin [Aeromonas veronii B565] >gi|... 176 7e-42 ref|YP_048546.1| putative porin [Pectobacterium atrosepticum SCR... 172 2e-40 ref|ZP_04583634.1| OmpA/MotB domain-containing protein [Helicoba... 142 3e-31 ref|YP_736901.1| OmpA/MotB domain-containing protein [Shewanella... 120 7e-25 ref|ZP_08484196.1| OmpA/MotB domain protein [Methylomicrobium al... 91 6e-16 >ref|YP_294249.1| OmpA [Ralstonia eutropha JMP134] gb|AAZ59405.1| OmpA [Ralstonia eutropha JMP134] Length = 591 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 259/594 (43%), Positives = 341/594 (57%), Gaps = 58/594 (9%) Query: 18 AIGASFASGCAVDPATGKPSFKETFASDDPCSQNARNIGIGVGVLAGAILGKQVGGDNK- 76 A+ S +GCA P KETFASDDPCS NARNIGI G +AGA+LG V + K Sbjct: 34 AVACSMVTGCATAPGG---YLKETFASDDPCSNNARNIGITAGAIAGAVLGNVVSSNKKV 90 Query: 77 GLLIGGALGGLIGGLIGNDIDKRRCELSKIAKQYQLDVQVTALDTRGEAIAGADSGKAKQ 136 G L+G +G +GGLIG D+D+RRCELS+IAK++ LDV + + G A+ A+ ++Q Sbjct: 91 GTLLGAGVGAALGGLIGADMDRRRCELSRIAKKHGLDVTMVDIAADGSAMEPANRA-SEQ 149 Query: 137 ETAGSVVEIRDP-AGAGGHFESNSDQLTPRARDYFTAIAATYDVRKSAAEI--QDLNLRK 193 G V +RD AGA G F S S LTP AR FT IA Y + ++ Q + Sbjct: 150 GGIGLSVSVRDSGAGANGQFASGSSVLTPEARVAFTEIAQQYAYPVQSRQLGPQSTPQDR 209 Query: 194 QYLEKMAQRKLLLVGHTDDTGSSRLNADLSERRARAVSRFMQEHGVAAGSLYFQGAGEFY 253 Q +E + R++LL+GHTDDTGSSRLNADLSE+RARAV+ ++ GVA LY+QGAGE Sbjct: 210 QAVEGLKSRRILLIGHTDDTGSSRLNADLSEQRARAVAALFRDAGVAESQLYYQGAGETM 269 Query: 254 PVASNETEEGRAKNRRVEIVELSDKASFDNYLAARRPRVEFYRQDKGD----------VS 303 P+A N E GRAKNRRVEIV+++D+A+F YLAARRP V FYR+ D VS Sbjct: 270 PLADNRDEAGRAKNRRVEIVDVTDEAAFAKYLAARRPNVAFYRESASDPSQSGRDNIAVS 329 Query: 304 AP--TAQISQAASGAAAAKGGTRPRHARTAQNSAGNSSDAGTTPSATANTSAAGNAKART 361 AP + S ASG A A+ R A + QN +G Sbjct: 330 APRAKSASSARASGQAKAQSPVRTASANSRQNESG------------------------- 364 Query: 362 GAVATAPAETTPASASASASPSATASASASAPTTGKAAAADGGNWIDFGGAPLVASMQTA 421 G VA APA P A+ASP+ ++ + T+ + A IDFGG P S Sbjct: 365 GDVAKAPAGERPV---ATASPAPATTSKPNVETSTRTVRAPS---IDFGGTPSGRSAMMP 418 Query: 422 AIGKVESKRPFFSLISPAYADEPPVLADCTRDRPRASNSVKALADGKTYRTSEHIPGLYG 481 +GK++ + SLIS A AD P LA C +DRPR S +VKAL+D K YRT++++PGLY Sbjct: 419 DLGKLD-RSGGLSLISSAVADTP--LARCDQDRPRESRAVKALSDDKAYRTADYMPGLYN 475 Query: 482 KTWTDQVNGHQVVVNRIAVLSSDGTVSSPPEFKVYKNYDAARRNDIKPDVALQPEVNTYL 541 WTD VNGH V + +AVL G + PE VY++Y +++ D+ + +VNTY Sbjct: 476 TIWTDTVNGHLVALKGVAVLRDGGAPARRPEVLVYRDYHDSKQT---ADLRTEAQVNTYR 532 Query: 542 GSKGLLYRIFLKGQAGLQCADIVFDSNGGNAAKAGRLVYLRANTPYAADFKPKM 595 G KGLLYR+F+ +A LQC DIV + A+ L Y + Y+A F P+M Sbjct: 533 GDKGLLYRVFVN-KAPLQCLDIVIPHASPDHAQGSWLRYDKDGNGYSAAFNPRM 585 >ref|YP_004683877.1| OmpA protein [Cupriavidus necator N-1] gb|AEI75396.1| OmpA protein [Cupriavidus necator N-1] Length = 595 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 257/592 (43%), Positives = 347/592 (58%), Gaps = 36/592 (6%) Query: 11 VVRTLVAAIGASFASGCAVDPATGKPSFKETFASDDPCSQNARNIGIGVGVLAGAILGKQ 70 V R A+ S +GCA P KETFASDDPCS NARNIGI GV+AGA+LG Sbjct: 27 VWRWTSLAVACSMVTGCATAPGA---YLKETFASDDPCSNNARNIGIAAGVIAGAVLGNV 83 Query: 71 VGGDNK-GLLIGGALGGLIGGLIGNDIDKRRCELSKIAKQYQLDVQVTALDTRGEAIAGA 129 V + K G L+G +G +GGLIG D+D+RRCELS+IAK++ LDV V + G A+A A Sbjct: 84 VSSNKKVGTLLGAGVGAALGGLIGADMDRRRCELSRIAKKHGLDVTVVDIAADGSALAPA 143 Query: 130 DSGKAKQETAGSVVEIRDPAGAGG--HFESNSDQLTPRARDYFTAIAATYDVRKSAAEI- 186 + +Q G V +RD AG GG F S S L P AR FT IA Y A + Sbjct: 144 TRDR-EQGGLGMSVSVRD-AGTGGSSQFASGSSVLAPDARVAFTEIAQQYAYAAQARMLG 201 Query: 187 -QDLNLRKQYLEKMAQRKLLLVGHTDDTGSSRLNADLSERRARAVSRFMQEHGVAAGSLY 245 + +Q +E + R++LL+G+TDDTGSSRLNA+LSE+RARAV+ ++ GV LY Sbjct: 202 PKSTTQERQAVEALKSRRILLIGNTDDTGSSRLNAELSEQRARAVAALFRDAGVTESQLY 261 Query: 246 FQGAGEFYPVASNETEEGRAKNRRVEIVELSDKASFDNYLAARRPRVEFYRQDKGDVSAP 305 +QGAGE P+A N E GRAKNRRVEIV+++D+++F YLAARRP V FYR+ D + Sbjct: 262 YQGAGETMPLADNRDETGRAKNRRVEIVDVTDESAFAKYLAARRPNVAFYRESAADRTQ- 320 Query: 306 TAQISQAASGAAAAKGGTRPRHARTAQNSAGNSSDAGTTPSATANTSAAGNAKARTGAVA 365 + + S A+GAA K T R AG+ +P TA+ ++ AR+ AV Sbjct: 321 SGRDSGEANGAAQKKSATTAR--------AGDRPKT-QSPVRTASAASPRQGDARSDAVK 371 Query: 366 TAPAETTPASASASASPSATASASASAPTTGKAAAADGGNWIDFGGAPLVASMQTAAIGK 425 PA P +++++ + A A T +A IDFGG P S+ +GK Sbjct: 372 V-PAGDRPVTSASATASPAPAQKQGPVTQTRIVSAPS----IDFGGTPSGRSVMVPDLGK 426 Query: 426 VESKRPF-FSLISPAYADEPPVLADCTRDRPRASNSVKALADGKTYRTSEHIPGLYGKTW 484 ++ RP F+LIS A AD P LA C +DRPR + +VK+L+D K YRT++++PGLY W Sbjct: 427 LD--RPTGFALISSAVADTP--LARCDQDRPREARAVKSLSDDKAYRTADYMPGLYNTIW 482 Query: 485 TDQVNGHQVVVNRIAVLSSDGTVSSPPEFKVYKNY-DAARRNDIKPDVALQPEVNTYLGS 543 TD VNGH V + +AVL G + PE VY++Y DA + D++ + +VNTY G Sbjct: 483 TDTVNGHLVALKGVAVLRDGGAPARSPEVLVYRDYHDAGQVADLR----TEAQVNTYRGD 538 Query: 544 KGLLYRIFLKGQAGLQCADIVFDSNGGNAAKAGRLVYLRANTPYAADFKPKM 595 KGLLYR+F+ +A LQC DIV + A+ L Y + Y+A F P+M Sbjct: 539 KGLLYRVFVN-KAPLQCLDIVIPHATPDQARGSWLRYDKDGNSYSAAFSPRM 589 >gb|EFV82666.1| hypothetical protein HMPREF0005_00359 [Achromobacter xylosoxidans C54] Length = 495 Score = 273 bits (697), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 182/518 (35%), Positives = 264/518 (50%), Gaps = 77/518 (14%) Query: 92 IGNDIDKRRCELSKIAKQYQLDVQVTAL---DTRGEAIA-----GADSGKAKQETAGSVV 143 IG++ID+RRC L K+A+ LD+ V+ + DT+ + +A G S A + TAG V Sbjct: 39 IGHNIDERRCALFKVAQANNLDLVVSDIKVADTQVDPLATPKPQGGGSADAAKTTAGLSV 98 Query: 144 EIRDPAGAGGHFESNSDQLTPRARDYFTAIAATY-DVRKSAAEIQD---LNLRKQYLEKM 199 I D G F S LTP+A +A TY DV ++A +D +N R + Sbjct: 99 SIID---KGEQFAPGSAILTPQAAKAMADLADTYRDVAAASASAKDRDAVNARNNAM--- 152 Query: 200 AQRKLLLVGHTDDTGSSRLNADLSERRARAVSRFMQEHGVAAGSLYFQGAGEFYPVASNE 259 ++LLVGHTDDTGSS+LNADLSE RARAV++ G A +++QGAGE P+A N Sbjct: 153 ---RILLVGHTDDTGSSQLNADLSEARARAVAKIFVSRGFRADQIFYQGAGETLPIADNH 209 Query: 260 TEEGRAKNRRVEIVELSDKASFDNYLAARRPRVEFYRQDKGDVSAPTAQISQAASGAAAA 319 + GRA+NRRVE+V+L + + YLA R+P + +YR S P + + Sbjct: 210 SAAGRARNRRVEVVDLGEDEAMAGYLANRKPVLAYYRTPGPAASGPRKETT--------- 260 Query: 320 KGGTRPRHARTAQNSAGNSSDAGTTPSATANTSAAGNAKARTGAVATAPAETTPASASAS 379 GG +P +R A N +D P+ +P ++ Sbjct: 261 -GGAQPTSSRKASVGQANRND--------------------------RPSVASPDPSATD 293 Query: 380 ASPSATASASASAPTTGKAAAADGGNWIDFGGAPLVASMQTAAIGKVESKRPFFSLISPA 439 A+PSA AS +A IDFGG P+ + +IGK+ +++ FSL+S A Sbjct: 294 ATPSAHASTAAQD--------------IDFGGTPVHGNYVQVSIGKLSTQKSTFSLLSTA 339 Query: 440 YADEPPVLADCTRDRPRASNSVKALADGK--TYRTSEHIPGLYGKTWTDQVNGHQVVVNR 497 +A EP ++ C DRPR S VK+L + + + T++++PG+Y +W VNGH V + Sbjct: 340 HAAEPSIVGSCADDRPRISKGVKSLKNDREAKFSTNDYLPGVYDSSWAGLVNGHLVALTH 399 Query: 498 IAVLSSDGTVSSPPEFKVYKNYDAARRNDIKPDVALQPEVNTYLGSKGLLYRIFLKGQAG 557 +AVL G+ + PE VY NY ++ +P + +PEVN Y GS LLYR+F+ Sbjct: 400 VAVLRDGGSPARRPELLVYTNYSGDKK--AEPTLRSKPEVNAYQGSDALLYRVFVGDS-- 455 Query: 558 LQCADIVFDSNGGNAAKAGRLVYLRANTPYAADFKPKM 595 LQC DIV + A LVY Y F P + Sbjct: 456 LQCMDIVIPNKDPRHAPDSNLVYTLNKQSYQTAFAPSL 493 >ref|YP_003743304.1| OmpA family protein [Erwinia billingiae Eb661] emb|CAX61457.1| OmpA family protein [Erwinia billingiae Eb661] Length = 500 Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 157/507 (30%), Positives = 236/507 (46%), Gaps = 89/507 (17%) Query: 93 GNDIDKRRCELSKIAKQYQLDVQVTALDTRGEAIAGADSGKAKQETAGSVVEIRDPAGAG 152 GN R L+KIA + + + + L + +SG K G V ++ D Sbjct: 74 GNAWQNREKALAKIAAEEHIVISSSPLQAQ-------ESGGKKD--VGIVAQVED----N 120 Query: 153 GHFESNSDQLTPRARDYFTAIAATYDVRKSAAEIQDLNLRKQYLEKMAQRKLLLVGHTDD 212 G F+++S QL+ + VRK AA ++ + Q +L+VGHTD Sbjct: 121 GMFDTDSAQLS---------VDGLRQVRKLAAVMK---------QDDQQGVVLIVGHTDA 162 Query: 213 TGSSRLNADLSERRARAVSRFMQEHGVAAGSLYFQGAGEFYPVASNETEEGRAKNRRVEI 272 TG++ N LSE RA++V R +Q+ G+ LYFQGAG P+A N T GR+ NRRVEI Sbjct: 163 TGNASWNQKLSESRAQSVGRVLQQAGLNPQRLYFQGAGSSRPIADNATLAGRSANRRVEI 222 Query: 273 VELSDKASFDNYLAARRPRVEFYRQDKGDVSAPTAQISQAASGAAAAKGGTRPRHARTAQ 332 V L+++A + RVE Q S A + GT+ Sbjct: 223 VGLANEALL-------KQRVE-----------------QEGSNLAYLRYGTQ-------- 250 Query: 333 NSAGNSSDAGTTPSATANTSAAGNAK-ARTGAVATAPAETTPASASASASPSATASASAS 391 S+D+ P AT TS+ A+ A+ + + + A T ASA S A+ +S Sbjct: 251 -----SADSMAKPKAT--TSSRKTARPAKQTSSSQSRASKTDEVASAVESSQTAAATPSS 303 Query: 392 APTTGKAAAADGGNWIDFGGAPLVASMQTAAIGKVESKRPFFSLISPAYADEPPVLADCT 451 PT GK NW+DFGG P+ +MQ A ++ FSLIS A A + V C Sbjct: 304 QPTNGK-------NWVDFGGQPVSRAMQPLA-ANLKPLSSGFSLISKANASQ--VTGSCL 353 Query: 452 RDRPRASNSVKALADGK---TYRTSEHIPGLYGKTWTDQVNGHQVVVNRIAVLSSDGTVS 508 D R + + K LA GK T+RT +++P + G W VN H V ++ + VL + TV Sbjct: 354 TDTARVAGAAKNLASGKAIDTHRTKDYLPNMNGHAWAGLVNNHLVTLSPVQVLQENATVE 413 Query: 509 SPPEFKVYKNYDAARRNDIKPDVALQPEVNTYLGSKGLLYRIFLKGQAG--LQCADIVFD 566 P+ + +NY + + K D +Q N + G +LYR+++ G L C D++ Sbjct: 414 VNPKVYITRNYQST--GNRKVDAPVQAVANAWEGEDSILYRVYMPAADGQPLSCIDLLMP 471 Query: 567 SNGGNAAKAGRLVYLRANTPYAADFKP 593 N A+ G+L Y + Y A++ P Sbjct: 472 KNAAK-AQQGQLFYSSHSNAYMANYLP 497 >ref|ZP_03829090.1| putative porin [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 505 Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 161/505 (31%), Positives = 236/505 (46%), Gaps = 82/505 (16%) Query: 94 NDIDKRRCELSKIAKQYQLDVQVTALDTRGEAIAGADSGKAKQETAGSVVEIRDPAGAGG 153 N R L+KIA++ + + AL ++ K+ ET G V +++D G Sbjct: 75 NVWQNREEALAKIAQEENIAMTTRALQSQE---------KSGTETVGLVAQVQD----SG 121 Query: 154 HFESNSDQLTPRARDYFTAIAATYDVRKSAAEIQDLNLRKQYLEKMAQRKLLLVGHTDDT 213 F++NS QL+ IA + I L+VGHTD T Sbjct: 122 MFDTNSAQLSTDGLRQVKKIATAMKEGDQSGVI------------------LVVGHTDAT 163 Query: 214 GSSRLNADLSERRARAVSRFMQEHGVAAGSLYFQGAGEFYPVASNETEEGRAKNRRVEIV 273 GS+ N LSE+RA+ V R +++ G++A LYFQGAG PVA N T GR NRRVEIV Sbjct: 164 GSAEWNQRLSEQRAQNVGRVLEQAGLSAQKLYFQGAGSARPVADNATVTGRTANRRVEIV 223 Query: 274 ELSDKASFDNYLAARRPRVEFYRQDKGDVSAPTAQISQAASGAAAAKGGTRPRHARTAQN 333 L+++A + R+E Q S A + GT + TA++ Sbjct: 224 GLANEALL-------KQRLE-----------------QEGSNLAYLRYGTAEQATSTARS 259 Query: 334 SAGNSSDAGTTPSATANTSAAGNAKARTGAVATAPAETTPASASASASPSATASASASAP 393 SA +S A + S++ N KA + T AET A+ + SAT + + AP Sbjct: 260 SATSSRKAKPSISSS-------NRKADS----TRKAETQTAAVT-----SATEAKPSVAP 303 Query: 394 TTGKAAAADGGNWIDFGGAPLVASMQTAAIGKVESKRPFFSLISPAYADEPPVLADCTRD 453 TT KA A+ N++DFGG P+ +S+ A ++ + FSLI A A +L C D Sbjct: 304 TTKKAEPANSKNFVDFGGQPVNSSIPVLA-ASLKPRSSGFSLIPEANAS--TMLKSCVAD 360 Query: 454 RPRASNSVKALADGK---TYRTSEHIPGLYGKTWTDQVNGHQVVVNRIAVLSSDGTVSSP 510 R S K LA GK + T E++PG+ G+ W VN H V ++ + VLS + TV Sbjct: 361 NVRVSGQAKNLASGKAVEAHETREYLPGMNGRAWAGLVNNHLVTLSPVKVLSDNATVVEN 420 Query: 511 PEFKVYKNYDAARRNDIKPDVALQPEVNTYLGSKGLLYRIFLKG--QAGLQCADIVFDSN 568 P KVY D + + K D L N + G + +LYR++L+ Q L C D++ Sbjct: 421 P--KVYVTRDYQSKGNRKADAPLNAVANAWEGEESILYRVYLQDETQQALSCVDLLVPKK 478 Query: 569 GGNAAKAGRLVYLRANTPYAADFKP 593 A+ G+L Y + Y A + P Sbjct: 479 ASK-AQQGQLFYSNHSKEYIASYTP 502 >ref|YP_004393568.1| putative porin [Aeromonas veronii B565] gb|AEB50951.1| putative porin [Aeromonas veronii B565] Length = 512 Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 152/500 (30%), Positives = 224/500 (44%), Gaps = 85/500 (17%) Query: 99 RRCELSKIAKQYQLDVQVTALDTRGEAIAGADSGKAKQETAGSVVEIRDPAGAGGHFESN 158 R EL +IAK+ L++ L +A + + AG V +I D G F Sbjct: 86 RLQELDRIAKEENLNIATEKL-----TVAEPSAVTGVPQDAGLVAQIPD----SGMFAIG 136 Query: 159 SDQLTPRARDYFTAIAATYDVRKSAAEIQDLNLRKQYLEKMAQRKLLLVGHTDDTGSSRL 218 S QLT T +A Y + +AA+ + R++LLVGH+D TG + L Sbjct: 137 SAQLTESGLRVVTKLAQLYS-KPAAADASN------------ARRILLVGHSDATGPAEL 183 Query: 219 NADLSERRARAVSRFMQEHGVAAGSLYFQGAGEFYPVASNETEEGRAKNRRVEIVELSDK 278 N LSE+RARAV + + G+ A +Y+QGAG P+A N R +NRRVEIVEL+++ Sbjct: 184 NLRLSEQRARAVGKILVASGIPASFIYYQGAGSSRPIADNSDPLLRGQNRRVEIVELANE 243 Query: 279 ASFDNYLAARRPRVEFYRQDKGDVSAPTAQISQAASGAAAAKGGTRPRHARTAQNSAGNS 338 + + + R + + P TRP Sbjct: 244 QALVMRAQSEESNTRYLRYGTSETAKPRV-------------AATRP------------- 277 Query: 339 SDAGTTPSATANTSAAGNAKARTGAVATAPAETTPASASASASPSATASASASAP-TTGK 397 A SA+G+ K T + TAP TT A SAP T+ Sbjct: 278 ----------AAQSASGSGKVTTTS-QTAPRHTT---------------AKQSAPDTSMA 311 Query: 398 AAAADGGNWIDFGGAPLVASMQTAAIGKVESKRPFFSLISPAYADEPPVLADCTRDRPRA 457 AA +DFGG P + Q ++ K F+LIS AYA + P ++ C D+PR+ Sbjct: 312 KAAPSAKAAVDFGGKP-AETYQWNMAQNIKPKASGFALISSAYASDMP-MSSCEADKPRS 369 Query: 458 SNSVKALADGKT---YRTSEHIPGLYGKTWTDQVNGHQVVVNRIAVLSSDGTVSSPPEFK 514 + V ++AD K + T E++PG + W + VNGH V V+ +++L + V P + Sbjct: 370 AGQVLSMADDKPLPRHATKEYMPGYNNRVWANTVNGHLVTVSPVSILRDNAKVDRQPILQ 429 Query: 515 VYKNYDAARRNDIKPDVALQPEVNTYLGSKGLLYRIFLKG-QAGLQCADIVFDSNGGNAA 573 V + Y ++ N KP L+ NTY G +LYR+F +A + C D+VF S G Sbjct: 430 VVQGYKSS--NQKKPQT-LKAVANTYEGESEVLYRVFTSDPKASVSCMDLVF-SKGNAQV 485 Query: 574 KAGRLVYLRANTPYAADFKP 593 G L Y + Y A +KP Sbjct: 486 SQGALFYPAGSEAYVASYKP 505 >ref|YP_048546.1| putative porin [Pectobacterium atrosepticum SCRI1043] emb|CAG73343.1| putative porin [Pectobacterium atrosepticum SCRI1043] Length = 506 Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 157/506 (31%), Positives = 231/506 (45%), Gaps = 83/506 (16%) Query: 94 NDIDKRRCELSKIAKQYQLDVQVTALDTRGEAIAGADSGKAKQETAGSVVEIRDPAGAGG 153 N R L+KIA++ + + +L ++ K+ ET G V +++D G Sbjct: 75 NVWQNREEALAKIAQEENIAITTRSLQSQE---------KSGTETVGLVAQVQD----SG 121 Query: 154 HFESNSDQLTPRARDYFTAIAATYDVRKSAAEIQDLNLRKQYLEKMAQRKLLLVGHTDDT 213 F++NS QL+ IA + I L+VGHTD T Sbjct: 122 MFDTNSAQLSTDGLRQVKKIATAMKEGDQSGVI------------------LVVGHTDAT 163 Query: 214 GSSRLNADLSERRARAVSRFMQEHGVAAGSLYFQGAGEFYPVASNETEEGRAKNRRVEIV 273 GS+ N LSE+RA+ V R +++ G++A LYFQGAG PVA N T GR NRRVEIV Sbjct: 164 GSAEWNQRLSEQRAQNVGRVLEQAGLSAQKLYFQGAGSARPVADNVTITGRTSNRRVEIV 223 Query: 274 ELSDKASFDNYLAARRPRVEFYRQDKGDVSAPTAQISQAASGAAAAKGGTRPRHARTAQN 333 L+++ + R+E Q S A + GT + TA + Sbjct: 224 GLANETLL-------KQRLE-----------------QEGSNLAYLRYGTAEQATSTASS 259 Query: 334 SAGNSSDAGTTPSATANTSAAGNAKARTGAVATAPAETTPASASASASPSATASASASAP 393 S+ +S A PS +++ N K T AE A+ + SA P + AP Sbjct: 260 SSTSSRKA--KPS-----TSSSNRKVE----PTRKAEMETAAVTPSAPPQPSG-----AP 303 Query: 394 TTGKAAA-ADGGNWIDFGGAPLVASMQTAAIGKVESKRPFFSLISPAYADEPPVLADCTR 452 TT KA+ A+ +++DFGG P+ +S A ++ + FSLI A A +L C Sbjct: 304 TTKKASEPANSKSFVDFGGQPVSSSTPVLA-ANLKPRSSGFSLIPEANASS--MLKSCVA 360 Query: 453 DRPRASNSVKALADGK---TYRTSEHIPGLYGKTWTDQVNGHQVVVNRIAVLSSDGTVSS 509 D R S K LA GK T+ T E++PG+ G+ W VN H V ++ + VLS + TV Sbjct: 361 DNVRVSGQAKNLASGKAVETHETREYLPGMNGRAWAGLVNNHLVTLSPVKVLSDNATVVE 420 Query: 510 PPEFKVYKNYDAARRNDIKPDVALQPEVNTYLGSKGLLYRIFLKG--QAGLQCADIVFDS 567 P KVY D + + K D L N + G +LYR++L+ Q L C D++ Sbjct: 421 NP--KVYVTRDYQSKGNRKADAPLNAVANAWEGEDSILYRVYLQNETQQALSCVDLLVPK 478 Query: 568 NGGNAAKAGRLVYLRANTPYAADFKP 593 A+ G+L Y + Y A + P Sbjct: 479 KASK-AQQGQLFYSNHSKEYIASYTP 503 >ref|ZP_04583634.1| OmpA/MotB domain-containing protein [Helicobacter winghamensis ATCC BAA-430] gb|EEO25512.1| OmpA/MotB domain-containing protein [Helicobacter winghamensis ATCC BAA-430] Length = 466 Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 104/289 (35%), Positives = 151/289 (52%), Gaps = 49/289 (16%) Query: 48 CSQNARNIG--------IGVGVLAGAILGKQVGGDNKGLLIGGALGGLIGGLIG----ND 95 C+ N +NIG + VG GAI+GKQV G N G L+G +G + GG+ G + Sbjct: 19 CAINQQNIGKVSGTAGGVLVGAGTGAIIGKQVSG-NSGALVGAGIGAIAGGIAGFFIGDY 77 Query: 96 IDKRRCELSKIAKQYQLDVQVTALDTRGEAIAGADSGKAKQETAGSVVEIRDPAGAGGHF 155 IDKRR E KI++ + ++ + G KQ+ V I+D F Sbjct: 78 IDKRRAEQRKISEAKNVKIEFENIKKDG----------TKQK--NDKVIIKD----NNQF 121 Query: 156 ESNSDQLTPRARDYFTAIAATYDVRKSAAEIQDLNLRKQYLEKMAQRKLLLVGHTDDTGS 215 +S S L P A+DY+T IA TY V+ +K+L+VGHTDDTG+ Sbjct: 122 KSASSTLNPNAKDYYTQIAKTYQVK--------------------DKKILIVGHTDDTGN 161 Query: 216 SRLNADLSERRARAVSRFMQEHGVAAGSLYFQGAGEFYPVASNETEEGRAKNRRVEIVEL 275 S N LSE+RARAV + ++GV+ ++Y+QGAG P A N TE+GRA+NRRVEI+EL Sbjct: 162 SAFNQKLSEKRARAVGKVFAQNGVSTKNIYYQGAGSTQPKADNNTEKGRAENRRVEIIEL 221 Query: 276 SDKASFDNYLAARRPRVEFYRQDKGDVSAPTAQISQAASGAAAAKGGTR 324 ++A Y + +F + K +V T+Q S + A +K ++ Sbjct: 222 DNEADVALYTSQNITNTKFLTKTKKEVMQKTSQKSLKETLAQTSKKDSK 270 Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 63/182 (34%), Positives = 97/182 (53%), Gaps = 11/182 (6%) Query: 407 IDFGGAPLVASMQ--TAAIGKVESKRPFFSLISPAYADEPPVLADCTRDRPRASNSVKAL 464 +DFGG ++ T GK++ K FFSL + AYAD ++ +C R K+L Sbjct: 277 MDFGGIKSKNTLLALTDEFGKIQ-KNSFFSLATKAYADNN-IMLNCLNTRYIDDTPTKSL 334 Query: 465 ADGKTY-RTSEHIPGLYGKTWTDQVNGHQVVVNRIAVLSSDGTVSSPPEFKVYKNYDAAR 523 A+ K +TS+ GL +W+ H + + IAVL+ D V+ P+ +YK+Y Sbjct: 335 ANDKELPKTSKFRKGLNASSWSANAGNHLIGIAPIAVLA-DNEVAKNPKVYLYKDYVVGS 393 Query: 524 RNDIKPDVALQPEVNTYLGSKGLLYRIFLKGQ-AGLQCADIVFDSNGGNAAKAGRLVYLR 582 + K + A+ + NTY GS GLLYR++ + A +C DIVFD+ NA++A +Y Sbjct: 394 K--AKANQAISTKTNTYNGSNGLLYRVYADSKNASFECMDIVFDNK--NASQAKGYMYYS 449 Query: 583 AN 584 AN Sbjct: 450 AN 451 >ref|YP_736901.1| OmpA/MotB domain-containing protein [Shewanella sp. MR-7] gb|ABI41844.1| OmpA/MotB domain protein [Shewanella sp. MR-7] Length = 514 Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 80/239 (33%), Positives = 120/239 (50%), Gaps = 11/239 (4%) Query: 364 VATA-PAETTPASASASASPSATASASASAPTTGKAAAADGGNWIDFGGAPLVASMQTAA 422 VAT P+ETT S AS A + + S A +DFGG + A Sbjct: 279 VATVKPSETTAKSVDV-ASKDAQITMTQSEMVQLIEPAKQQKALVDFGGQKMTDPSTNFA 337 Query: 423 IGKVESKRPFFSLISPAYADEPPVLADCTRDRPRASNSVKALADGKTYR-----TSEHIP 477 K F+L S AYA E L +C + PR + VK+LA G++Y T++++P Sbjct: 338 QLVGTKKESGFALFSNAYASEISSL-NCAVEGPRVAGDVKSLATGESYNRQDYNTADYLP 396 Query: 478 GLYGKTWTDQVNGHQVVVNRIAVLSSDGTVSSPPEFKVYKNYDAARRNDIKPDVALQPEV 537 G+ G W ++VNGH + ++ +AV+ GT + P+ ++KNY A + P L V Sbjct: 397 GMNGTVWVNKVNGHYIGLSPVAVIKDSGTAVAAPKVNIWKNYKGASQE--APSYELSSHV 454 Query: 538 NTYLGSKGLLYRIFLKGQ-AGLQCADIVFDSNGGNAAKAGRLVYLRANTPYAADFKPKM 595 TY G +GLLYRIF + + ++C D+V + A G+L Y + T Y A F+PK+ Sbjct: 455 ETYYGDRGLLYRIFTTDKDSPVRCIDVVMPIDRSATAITGKLYYEKNKTVYEAGFEPKL 513 Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 95/285 (33%), Positives = 137/285 (48%), Gaps = 39/285 (13%) Query: 1 MTLTLRRKTLVVRTLVAAIGASFASGCAVDPATGKPSFKETFASDDPCSQNARNIGIGVG 60 MT+ K +VV A A S CAV + + KET IG +G Sbjct: 1 MTMISNFKPIVV----AVTSALLLSSCAVTQSV--ENNKETV------------IGCAIG 42 Query: 61 VLAGAILGKQVGGDNKGLLIGGALGGLIGGLIGNDIDKRRCELSKIAKQYQLDVQVTALD 120 GA++G +GG +G+ G A G IG +G D K+R L +AK LD+Q T++ Sbjct: 43 TGIGALIGNYIGG-KEGMAYGAAAGAAIGCTVGYDFQKKREALEALAKTENLDIQFTSIS 101 Query: 121 TRGEAIAGADSGKAKQETAGSVVEIRDPAGAGGHFESNSD-QLTPRARDYFTAIAATYDV 179 S A + ++ + A + E SD Q+ A I++T ++ Sbjct: 102 A---------STNADNQQNSLLISANNQAMSKEDQEKYSDYQVVGMA----ATISSTDEM 148 Query: 180 RKSAAEIQDLNLRKQYLEKMA------QRKLLLVGHTDDTGSSRLNADLSERRARAVSRF 233 + + KQ L+K+A ++ +L+ GHTD +GS LN LSE RAR V+ Sbjct: 149 MFGSGSAEATAQAKQKLQKLAAIYKDSKQNILITGHTDASGSESLNQTLSEARARYVATL 208 Query: 234 MQEHGVAAGSLYFQGAGEFYPVASNETEEGRAKNRRVEIVELSDK 278 + G+ L+FQGAGE PVA+N E G+AKNRRVEIVE+ K Sbjct: 209 FNQAGIPTERLFFQGAGESQPVAANTNETGKAKNRRVEIVEIEGK 253 >ref|ZP_08484196.1| OmpA/MotB domain protein [Methylomicrobium album BG8] gb|EGL04814.1| OmpA/MotB domain protein [Methylomicrobium album BG8] Length = 293 Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 79/266 (29%), Positives = 112/266 (42%), Gaps = 57/266 (21%) Query: 7 RKTLVVRTLVAAIGASFASGCAVDPATGKPSFKETFASDDPCSQNARNIGIGVGVLAGAI 66 +KTL L+ AI + S C DP TG+ S + + + IG G Sbjct: 2 KKTL----LITAISSVLLSACVTDPYTGQSSLSKAAMGGGIGAASGAAIGTAFG------ 51 Query: 67 LGKQVGGDNKGLLIGGALGGLIGGLIGNDIDKRRCELSKIAKQYQLDVQVTALDTRGEAI 126 G D K G GGL+G +G +D ++ KQ + +Q T ++ Sbjct: 52 -----GNDLKNAGWGALAGGLVGAAVGAYMDHQQ-------KQMEQSLQGTGIEV----- 94 Query: 127 AGADSGKAKQETAGSVVEIRDPAGAGGHFESNSDQLTPRARDYFTAIAATYDVRKSAAEI 186 Q TA + + + P F NS LTP+A+ +A Sbjct: 95 ---------QRTAENTLNLNMPENV--TFAFNSSTLTPQAQSALNTVAT----------- 132 Query: 187 QDLNLRKQYLEKMAQRKLLLVGHTDDTGSSRLNADLSERRARAVSRFMQEHGVAAGSLYF 246 + QY E + + GHTDD GS N LSE+RA +VS ++ +HGV L Sbjct: 133 ----ILNQYPES----TITVTGHTDDIGSDTYNQRLSEQRAASVSDYLGQHGVNFSRLKQ 184 Query: 247 QGAGEFYPVASNETEEGRAKNRRVEI 272 QG GE P N +EE RA+NRRVE+ Sbjct: 185 QGMGERMPKFPNTSEENRAQNRRVEL 210