BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0042.p (189 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773866.1| chorismate mutase [Herbaspirillum seropedica... 369 e-101 ref|YP_003897144.1| chorismate mutase [Halomonas elongata DSM 25... 127 1e-27 ref|YP_004753031.1| periplasmic chorismate mutase I [Collimonas ... 110 1e-22 ref|YP_001807586.1| chorismate mutase [Burkholderia ambifaria MC... 108 4e-22 ref|YP_001118773.1| chorismate mutase [Burkholderia vietnamiensi... 107 7e-22 ref|ZP_02889594.1| chorismate mutase [Burkholderia ambifaria IOP... 106 2e-21 ref|ZP_02904780.1| chorismate mutase [Burkholderia ambifaria MEX... 104 5e-21 ref|YP_772760.1| chorismate mutase [Burkholderia ambifaria AMMD]... 103 2e-20 ref|ZP_04946282.1| Chorismate mutase [Burkholderia dolosa AUO158... 102 2e-20 gb|EGD02689.1| chorismate mutase [Burkholderia sp. TJI49] 102 2e-20 >ref|YP_003773866.1| chorismate mutase [Herbaspirillum seropedicae SmR1] gb|ADJ61958.1| chorismate mutase protein [Herbaspirillum seropedicae SmR1] Length = 189 Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust. Identities = 188/189 (99%), Positives = 188/189 (99%) Query: 1 MRRLPSSCLPALALIATLLLSACATSTPPAARSDVEQLLSLQKTRLDVAAPVARSKWNSH 60 MRRLPSSCLPALALIATLLLSACATSTPPA RSDVEQLLSLQKTRLDVAAPVARSKWNSH Sbjct: 1 MRRLPSSCLPALALIATLLLSACATSTPPAVRSDVEQLLSLQKTRLDVAAPVARSKWNSH 60 Query: 61 APIDDPAREAVILDDVAARAQKLGLDAAWTRRFFQDQFEAGKIVQRDLHRQWRVEQRPPF 120 APIDDPAREAVILDDVAARAQKLGLDAAWTRRFFQDQFEAGKIVQRDLHRQWRVEQRPPF Sbjct: 61 APIDDPAREAVILDDVAARAQKLGLDAAWTRRFFQDQFEAGKIVQRDLHRQWRVEQRPPF 120 Query: 121 ANPPDLALQVRPVLDRLTPDLLAALARLNGHWCEPAVQRDLAELDAEILGADYPPAVRER 180 ANPPDLALQVRPVLDRLTPDLLAALARLNGHWCEPAVQRDLAELDAEILGADYPPAVRER Sbjct: 121 ANPPDLALQVRPVLDRLTPDLLAALARLNGHWCEPAVQRDLAELDAEILGADYPPAVRER 180 Query: 181 ATEALRCQR 189 ATEALRCQR Sbjct: 181 ATEALRCQR 189 >ref|YP_003897144.1| chorismate mutase [Halomonas elongata DSM 2581] emb|CBV41959.1| chorismate mutase [Halomonas elongata DSM 2581] Length = 197 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 72/174 (41%), Positives = 97/174 (55%) Query: 13 ALIATLLLSACATSTPPAARSDVEQLLSLQKTRLDVAAPVARSKWNSHAPIDDPAREAVI 72 L+ + + A AR V+ L++ + RL +A VA +KWNS API+ P REA I Sbjct: 22 GLLISGFVVAADQQASDEARETVDGLIAQVEQRLSIAPDVAMAKWNSEAPINVPEREAQI 81 Query: 73 LDDVAARAQKLGLDAAWTRRFFQDQFEAGKIVQRDLHRQWRVEQRPPFANPPDLALQVRP 132 L V AQ G+D R FFQDQF+A K VQ+ LH+QW+ E +PPF NPP+LA +RP Sbjct: 82 LKRVVEEAQHQGVDHQLARAFFQDQFDASKAVQKQLHQQWQKESQPPFDNPPNLANDIRP 141 Query: 133 VLDRLTPDLLAALARLNGHWCEPAVQRDLAELDAEILGADYPPAVRERATEALR 186 LD LTP L+ +L+ E A Q+ L E A + + E A +LR Sbjct: 142 QLDTLTPQLIQSLSEFQTFESESAAQQYLEESAARAVANNEYAEALEIALSSLR 195 >ref|YP_004753031.1| periplasmic chorismate mutase I [Collimonas fungivorans Ter331] gb|AEK62208.1| Periplasmic chorismate mutase I precursor [Collimonas fungivorans Ter331] Length = 191 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 60/123 (48%), Positives = 82/123 (66%), Gaps = 2/123 (1%) Query: 35 VEQLLSLQKTRLDVAAPVARSKWNSHAPIDDPAREAVILDDVAARAQKLGLDAAWTRRFF 94 V++LL+L RL VA VA++KWNS ++DP RE +ILD V A+A+ GLD + RRFF Sbjct: 40 VDRLLTLIDQRLAVAPLVAKAKWNSGGAVNDPPREQLILDAVVAQAK--GLDPVFARRFF 97 Query: 95 QDQFEAGKIVQRDLHRQWRVEQRPPFANPPDLALQVRPVLDRLTPDLLAALARLNGHWCE 154 Q QF+A K +Q LH QWR + + F + PDL VRPVLDRLTP+L+A L ++ + Sbjct: 98 QAQFDASKAMQLGLHAQWRRQGQGRFDDAPDLGRDVRPVLDRLTPELIAELEKIQPILAQ 157 Query: 155 PAV 157 P + Sbjct: 158 PGM 160 >ref|YP_001807586.1| chorismate mutase [Burkholderia ambifaria MC40-6] gb|ACB63370.1| chorismate mutase [Burkholderia ambifaria MC40-6] Length = 197 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 64/141 (45%), Positives = 81/141 (57%), Gaps = 6/141 (4%) Query: 13 ALIATLLLSACATSTPPAARSD-----VEQLLSLQKTRLDVAAPVARSKWNSHAPIDDPA 67 A +A L S+PP AR+D + L++L R+ +A PVAR KW +H I+D Sbjct: 7 ASVAVAALGVALFSSPPVARADGDDTALTNLVALASQRIALAEPVARWKWANHKAIEDQP 66 Query: 68 REAVILDDVAARAQKLGLDAAWTRRFFQDQFEAGKIVQRDLHRQWRVEQRPPFANPPDLA 127 REA +L V RA + G+D A+ R FF+DQ A K VQ L WR RPP PPDLA Sbjct: 67 REAALLASVEKRAAQSGVDPAFARTFFEDQIAASKDVQNALFATWRAT-RPPEGTPPDLA 125 Query: 128 LQVRPVLDRLTPDLLAALARL 148 RP LDRLT +LA LAR+ Sbjct: 126 TSTRPALDRLTQKMLAGLARI 146 >ref|YP_001118773.1| chorismate mutase [Burkholderia vietnamiensis G4] gb|ABO53938.1| chorismate mutase [Burkholderia vietnamiensis G4] Length = 197 Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 66/140 (47%), Positives = 81/140 (57%), Gaps = 6/140 (4%) Query: 13 ALIATLLLSACATSTPPAARSD-----VEQLLSLQKTRLDVAAPVARSKWNSHAPIDDPA 67 A +A L S PPAAR+D + L++L RL +A PVAR KW +H I+D Sbjct: 7 ASLAVATLGVAFLSAPPAARADGDDTALTNLVALASQRLALAEPVARWKWANHQAIEDKP 66 Query: 68 REAVILDDVAARAQKLGLDAAWTRRFFQDQFEAGKIVQRDLHRQWRVEQRPPFANPPDLA 127 REA +L V RA + G+DAA R FF+DQ A K VQ L WR RPP PPDLA Sbjct: 67 REAALLASVEKRAVQAGVDAAVARTFFEDQIAASKDVQNALFANWRAT-RPPEGTPPDLA 125 Query: 128 LQVRPVLDRLTPDLLAALAR 147 RP LD+LT +LAALA+ Sbjct: 126 TSTRPALDQLTQKMLAALAQ 145 >ref|ZP_02889594.1| chorismate mutase [Burkholderia ambifaria IOP40-10] gb|EDT04864.1| chorismate mutase [Burkholderia ambifaria IOP40-10] Length = 197 Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 63/142 (44%), Positives = 81/142 (57%), Gaps = 6/142 (4%) Query: 13 ALIATLLLSACATSTPPAARSD-----VEQLLSLQKTRLDVAAPVARSKWNSHAPIDDPA 67 A +A L S+PP AR+D + L++L R+ +A PVAR KW +H I+D Sbjct: 7 ASVAVAALGVALFSSPPVARADGDDTALTNLVALASQRIALAEPVARWKWANHKAIEDQP 66 Query: 68 REAVILDDVAARAQKLGLDAAWTRRFFQDQFEAGKIVQRDLHRQWRVEQRPPFANPPDLA 127 REA +L V RA + G+D A+ R FF+DQ A K VQ L WR RPP PPDLA Sbjct: 67 REAELLASVEKRAAQAGVDPAFARTFFEDQIAASKDVQNALFATWRAT-RPPEGTPPDLA 125 Query: 128 LQVRPVLDRLTPDLLAALARLN 149 RP LD+LT +LA LAR+ Sbjct: 126 TSTRPALDQLTQKMLAGLARIT 147 >ref|ZP_02904780.1| chorismate mutase [Burkholderia ambifaria MEX-5] gb|EDT44119.1| chorismate mutase [Burkholderia ambifaria MEX-5] Length = 197 Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 64/141 (45%), Positives = 79/141 (56%), Gaps = 6/141 (4%) Query: 13 ALIATLLLSACATSTPPAARSD-----VEQLLSLQKTRLDVAAPVARSKWNSHAPIDDPA 67 A IA L S PP AR+D + L++L R+ +A PVAR KW +H I+D Sbjct: 7 ASIAVAALGVALFSLPPVARADGDDTALTNLVALASQRIALAEPVARWKWANHKAIEDQP 66 Query: 68 REAVILDDVAARAQKLGLDAAWTRRFFQDQFEAGKIVQRDLHRQWRVEQRPPFANPPDLA 127 REA +L V RA + G+D A R FF+DQ A K VQ L WR RPP PPDLA Sbjct: 67 REAALLASVEKRAAQSGVDPALARTFFEDQIAASKDVQNALFATWRAT-RPPEGTPPDLA 125 Query: 128 LQVRPVLDRLTPDLLAALARL 148 RP LD+LT +LA LAR+ Sbjct: 126 TSTRPALDQLTQKMLAGLARI 146 >ref|YP_772760.1| chorismate mutase [Burkholderia ambifaria AMMD] gb|ABI86426.1| chorismate mutase [Burkholderia ambifaria AMMD] Length = 197 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 61/141 (43%), Positives = 79/141 (56%), Gaps = 6/141 (4%) Query: 13 ALIATLLLSACATSTPPAARSD-----VEQLLSLQKTRLDVAAPVARSKWNSHAPIDDPA 67 A +A L S+PP A +D + L++L R+ +A PVAR KW +H I+D Sbjct: 7 ASVAVAALGVALLSSPPVAFADGDDTALTNLVALASQRIALAEPVARWKWANHKAIEDQP 66 Query: 68 REAVILDDVAARAQKLGLDAAWTRRFFQDQFEAGKIVQRDLHRQWRVEQRPPFANPPDLA 127 REA +L V RA + G+D A+ R FF+DQ A K VQ L WR RPP PPDLA Sbjct: 67 REAALLASVEKRAAQSGVDPAFARTFFEDQIAASKDVQNALFATWRAT-RPPEGTPPDLA 125 Query: 128 LQVRPVLDRLTPDLLAALARL 148 RP LD+LT +LA L R+ Sbjct: 126 TSTRPALDQLTQKMLAGLGRI 146 >ref|ZP_04946282.1| Chorismate mutase [Burkholderia dolosa AUO158] gb|EAY69453.1| Chorismate mutase [Burkholderia dolosa AUO158] Length = 197 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/133 (45%), Positives = 77/133 (57%), Gaps = 5/133 (3%) Query: 35 VEQLLSLQKTRLDVAAPVARSKWNSHAPIDDPAREAVILDDVAARAQKLGLDAAWTRRFF 94 + L++L RL +A PVAR KW +H I+D REA +LD V RA + G+D A+ R FF Sbjct: 34 LTNLVALASQRLALAEPVARWKWANHKEIEDKPREAALLDAVEKRAVQTGVDPAFARTFF 93 Query: 95 QDQFEAGKIVQRDLHRQWRVEQRPPFANPPDLALQVRPVLDRLTPDLLAALARL----NG 150 +DQ A K VQ L WR RPP PPDLA RP LDRLT +LA LA++ N Sbjct: 94 EDQIAASKDVQNALFAAWRA-TRPPEGTPPDLATSTRPALDRLTEKMLAGLAQVAPLRNA 152 Query: 151 HWCEPAVQRDLAE 163 C+ + R +A Sbjct: 153 PDCQARLARSIAN 165 >gb|EGD02689.1| chorismate mutase [Burkholderia sp. TJI49] Length = 197 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/115 (48%), Positives = 72/115 (62%), Gaps = 1/115 (0%) Query: 35 VEQLLSLQKTRLDVAAPVARSKWNSHAPIDDPAREAVILDDVAARAQKLGLDAAWTRRFF 94 + L++L RL +A PVAR KW +H PI+D REA +L++V RA + G+D A+ R FF Sbjct: 34 LTNLVALASQRLALAEPVARWKWANHQPIEDRPREAALLENVVRRAPQSGVDPAFARAFF 93 Query: 95 QDQFEAGKIVQRDLHRQWRVEQRPPFANPPDLALQVRPVLDRLTPDLLAALARLN 149 +DQ A K VQ L WR RPP PPDLA RP LDRLT +LA LA++ Sbjct: 94 EDQIAASKDVQNALFASWRAT-RPPEGTPPDLATGTRPALDRLTQKMLAGLAQVG 147