BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0020.0027.p         (520 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773881.1| aerotaxis sensor receptor transmembrane prot...  1045   0.0  
ref|YP_001352217.1| aerotaxis sensor receptor (chemotaxis transd...   599   e-169
ref|YP_003773941.1| aerotaxis sensor receptor transmembrane prot...   578   e-163
ref|YP_001098794.1| aerotaxis sensor receptor, senses cellular r...   576   e-162
ref|YP_546041.1| methyl-accepting chemotaxis sensory transducer ...   572   e-161
ref|YP_004293364.1| methyl-accepting chemotaxis sensory transduc...   533   e-149
ref|YP_316164.1| methyl-accepting chemotaxis sensory transducer ...   523   e-146
ref|YP_729194.1| aerotaxis sensor receptor (chemotaxis transduce...   503   e-140
ref|YP_558616.1| methyl-accepting chemotaxis sensory transducer,...   499   e-139
ref|YP_004694130.1| methyl-accepting chemotaxis sensory transduc...   496   e-138

>ref|YP_003773881.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ61973.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 520

 Score = 1045 bits (2701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/520 (99%), Positives = 519/520 (99%)

Query: 1   MRMNMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEENELLGAPQNLIRHPD 60
           MRMNMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEENELLGAPQNLIRHPD
Sbjct: 1   MRMNMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEENELLGAPQNLIRHPD 60

Query: 61  MPAEAFADMWATIKGGTPWTGLVKNRSKNGDHYWVRANVTPIRENGQIVGYMSVRTKPER 120
           MPAEAFADMWATIKGGTPWTGLVKNRSKNGDHYWVRANVTPIRENGQIVGYMSVRTKPER
Sbjct: 61  MPAEAFADMWATIKGGTPWTGLVKNRSKNGDHYWVRANVTPIRENGQIVGYMSVRTKPER 120

Query: 121 DAVAGAEKLYASIRRGQAKGIALHRGEVVRTGLAGWLGKLSRMQLNSRLNLSMGIMLTIQ 180
           DAVAGAEKLYASIRRGQAKGIALHRGEVVRTGLAGWLGKLSRMQLNSRLNLSMGIML IQ
Sbjct: 121 DAVAGAEKLYASIRRGQAKGIALHRGEVVRTGLAGWLGKLSRMQLNSRLNLSMGIMLAIQ 180

Query: 181 LAVVVAGMAALHQWWISALAAAAALLSIVQWIALRNALIKPLHQALDITHAITGGDLSVR 240
           LAVVVAGMAALHQWWISALAAAAALLSIVQWIALRNALIKPLHQALDITHAITGGDLSVR
Sbjct: 181 LAVVVAGMAALHQWWISALAAAAALLSIVQWIALRNALIKPLHQALDITHAITGGDLSVR 240

Query: 241 IETTRHDELGRLLRSLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSRRTEAQAA 300
           IETTRHDELGRLLRSLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSRRTEAQAA
Sbjct: 241 IETTRHDELGRLLRSLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSRRTEAQAA 300

Query: 301 NLEETASSMHELASTVRQNADHAVQANDLAGTASAIAMRGGDAVASTGTTMNEISESSHK 360
           NLEETASSMHELASTVRQNADHAVQANDLAGTASAIAMRGGDAVASTGTTMNEISESSHK
Sbjct: 301 NLEETASSMHELASTVRQNADHAVQANDLAGTASAIAMRGGDAVASTGTTMNEISESSHK 360

Query: 361 IVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKEL 420
           IVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKEL
Sbjct: 361 IVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKEL 420

Query: 421 IDASVEKVDIGNRQVEQATSTMRDIVASVQRVSGIMGEIKEATQQQSAGINQVHEAITQM 480
           IDASVEKVDIGNRQVEQATSTMRDIVASVQRVSGIMGEIKEATQQQSAGINQVHEAITQM
Sbjct: 421 IDASVEKVDIGNRQVEQATSTMRDIVASVQRVSGIMGEIKEATQQQSAGINQVHEAITQM 480

Query: 481 DASTQQNASLVEEAAAAAGSLQEQTVRLLQAISVFKFNRR 520
           DASTQQNASLVEEAAAAAGSLQEQTVRLLQAISVFKFNRR
Sbjct: 481 DASTQQNASLVEEAAAAAGSLQEQTVRLLQAISVFKFNRR 520


>ref|YP_001352217.1| aerotaxis sensor receptor (chemotaxis transducer) transmembrane
           protein [Janthinobacterium sp. Marseille]
 gb|ABR89860.1| aerotaxis sensor receptor (chemotaxis transducer) transmembrane
           protein [Janthinobacterium sp. Marseille]
          Length = 555

 Score =  599 bits (1545), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 314/523 (60%), Positives = 394/523 (75%), Gaps = 4/523 (0%)

Query: 1   MRMNMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEENELLGAPQNLIRHPD 60
           MR N+PVT  E  L DG ++VSKTD KG ITYVNP F+E SGF+E EL+G P NLIRHPD
Sbjct: 1   MRTNLPVTSNEYFLQDGSSLVSKTDTKGRITYVNPAFMEASGFQEEELIGKPHNLIRHPD 60

Query: 61  MPAEAFADMWATIKGGTPWTGLVKNRSKNGDHYWVRANVTPIRENGQIVGYMSVRTKPER 120
           MP EAF DMW T+K G PWTGLVKNR KNGD YWV ANVTP+REN +IV +MSVR+KP R
Sbjct: 61  MPEEAFGDMWQTLKEGLPWTGLVKNRRKNGDFYWVNANVTPVRENNEIVAFMSVRSKPNR 120

Query: 121 DAVAGAEKLYASIRRGQAKGIALHRGEVVRTGLAGWLGKLSRMQLNSRLNLSMGIMLTIQ 180
           + V GA+ +YA  +  QAKG+A+ RG VV TG+ G L  L  + L S++ L M  ++ + 
Sbjct: 121 EQVEGADAIYARFKADQAKGLAIRRGAVVSTGIFGKLAALRDIGLGSKIALGMMTLIALI 180

Query: 181 LAVVVAGMAALHQ----WWISALAAAAALLSIVQWIALRNALIKPLHQALDITHAITGGD 236
            A+      A+       W +   AA   ++++ W +L  ++++PL   +  T  I GGD
Sbjct: 181 AALGFVATTAVENAARMGWYAGATAAGVCVALLLWASLHASVVRPLRTLIAETRVIAGGD 240

Query: 237 LSVRIETTRHDELGRLLRSLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSRRTE 296
           L+      RHD++G+L ++L+QMNVNL +++GD+R+NV++IT+ATREIA+GN+DLS RTE
Sbjct: 241 LTFDFAVDRHDDMGQLQQALQQMNVNLRSVMGDIRTNVDSITIATREIAAGNMDLSGRTE 300

Query: 297 AQAANLEETASSMHELASTVRQNADHAVQANDLAGTASAIAMRGGDAVASTGTTMNEISE 356
           +QA++LEETASSM + ASTV+QNAD A QAN+L  +AS +A +GG  V   G TM+EIS 
Sbjct: 301 SQASSLEETASSMEQFASTVKQNADSASQANELVQSASEVAGKGGAVVEKVGATMDEISA 360

Query: 357 SSHKIVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKE 416
           S+ KIVDIISLID IAFQTNILALNAAVEAARAGEQG+GFAVVASEVRSLAQRSA+AAKE
Sbjct: 361 SAKKIVDIISLIDGIAFQTNILALNAAVEAARAGEQGKGFAVVASEVRSLAQRSASAAKE 420

Query: 417 IKELIDASVEKVDIGNRQVEQATSTMRDIVASVQRVSGIMGEIKEATQQQSAGINQVHEA 476
           IK LID SVEKVD GNR V  A +TM DIV+SVQRV+GIM EI  A+++QS GI+QV+ A
Sbjct: 421 IKGLIDDSVEKVDAGNRLVSDAMTTMDDIVSSVQRVTGIMNEITVASREQSNGIDQVNLA 480

Query: 477 ITQMDASTQQNASLVEEAAAAAGSLQEQTVRLLQAISVFKFNR 519
           I+QMD  TQQNA+LVEEAAAAA SL+EQT  L Q+ISVF+  R
Sbjct: 481 ISQMDEVTQQNAALVEEAAAAAASLEEQTFHLTQSISVFRTGR 523


>ref|YP_003773941.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ62033.1| aerotaxis sensor receptor (chemotaxis transducer) transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 554

 Score =  578 bits (1491), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 310/525 (59%), Positives = 392/525 (74%), Gaps = 9/525 (1%)

Query: 1   MRMNMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEENELLGAPQNLIRHPD 60
           MR N+P+T  ERLL DGK+IVSKTDL+GNI YVNPYFIEISGFEE EL+GAPQN++RHP+
Sbjct: 1   MRKNLPITTTERLLEDGKSIVSKTDLQGNILYVNPYFIEISGFEEEELIGAPQNIVRHPE 60

Query: 61  MPAEAFADMWATIKGGTPWTGLVKNRSKNGDHYWVRANVTPIRENGQIVGYMSVRTKPER 120
           MP EAFADMWAT+K G PW GLVKNR KNGD+YWV+ANVTP+RENG+ VGYMSVRT+P R
Sbjct: 61  MPREAFADMWATLKEGLPWNGLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSR 120

Query: 121 DAVAGAEKLYASIRRGQAKGIALHRGEVVRTGLAGWLGKLSRMQLNSRLNLSMGIM-LTI 179
           + V  AE  Y     GQA+G+ +HRG VVRTGL GWL  L  + +  RL  +MG++ L  
Sbjct: 121 EQVQAAEAAYRKFSAGQARGLRVHRGAVVRTGLTGWLQGLRELPVARRLGWTMGVLTLMF 180

Query: 180 QLAVVVAGMAALHQW------WISALAAAAALLSIVQWIALRNALIKPLHQALDITHAIT 233
            L   VAG A +         W+    AA AL+ +  W  L  +++ PL +A+   H + 
Sbjct: 181 ILGGAVAGNAVMSAGGSPFAVWLGT--AAGALMLLASWAMLHASIVAPLQRAIKAVHGLA 238

Query: 234 GGDLSVRIETTRHDELGRLLRSLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSR 293
           GGDL   I+TT   ++G LL++L+Q+NVNL AIIGDVR NVE++T++T EIA+GN+DLS 
Sbjct: 239 GGDLDSHIDTTARGDMGLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIANGNMDLSG 298

Query: 294 RTEAQAANLEETASSMHELASTVRQNADHAVQANDLAGTASAIAMRGGDAVASTGTTMNE 353
           RTEAQA+ LEETASS+ E A+TVRQNAD A  A+  A +ASAIA RGG +V   G TM E
Sbjct: 299 RTEAQASALEETASSVEEFAATVRQNADSAANADRQAQSASAIAQRGGSSVQRMGRTMEE 358

Query: 354 ISESSHKIVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAA 413
           I  +SHKIVDII LID I+FQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAAA
Sbjct: 359 IDAASHKIVDIIGLIDGISFQTNILALNAAVEAARAGEQGRGFAVVAAEVRTLAQRSAAA 418

Query: 414 AKEIKELIDASVEKVDIGNRQVEQATSTMRDIVASVQRVSGIMGEIKEATQQQSAGINQV 473
           AK+IK LID S  KV+ GN+ V +    M ++  +V+ ++  M EI  A+ +QS GI Q+
Sbjct: 419 AKDIKGLIDDSRAKVESGNQLVRETAQAMGELGGAVENMAVTMAEITVASNEQSGGIEQL 478

Query: 474 HEAITQMDASTQQNASLVEEAAAAAGSLQEQTVRLLQAISVFKFN 518
           ++A+  +D +TQQNA+LVE+AAAAA +L++Q V+L QA+SVFK +
Sbjct: 479 NQAVNAIDETTQQNAALVEQAAAAAENLRDQAVKLSQAVSVFKIS 523


>ref|YP_001098794.1| aerotaxis sensor receptor, senses cellular redox state or proton
           motive force [Herminiimonas arsenicoxydans]
 emb|CAL60665.1| Aerotaxis receptor [Herminiimonas arsenicoxydans]
          Length = 553

 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 303/520 (58%), Positives = 382/520 (73%), Gaps = 4/520 (0%)

Query: 1   MRMNMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEENELLGAPQNLIRHPD 60
           MR N+PVT  E +L D  ++VSKTD KG I+YVNP FIE SGF E ELLG P NLIRHPD
Sbjct: 1   MRTNLPVTNAEFILRDEMSLVSKTDTKGRISYVNPAFIEASGFTEEELLGKPHNLIRHPD 60

Query: 61  MPAEAFADMWATIKGGTPWTGLVKNRSKNGDHYWVRANVTPIRENGQIVGYMSVRTKPER 120
           MP +AF DMW T++ G PWTG+VKNR KNGD YWV ANVTP+RE  +IV YMSVR+KP R
Sbjct: 61  MPEQAFGDMWQTLQQGLPWTGMVKNRRKNGDFYWVNANVTPVREEQKIVAYMSVRSKPSR 120

Query: 121 DAVAGAEKLYASIRRGQAKGIALHRGEVVRTGLAGWLGKLSRMQLNSRLNLSM----GIM 176
           + V    K+YA  + G AKG+ + RGEVV +GL G L  L  + L +R+ +SM     ++
Sbjct: 121 EQVDATAKIYARFKAGTAKGLMIKRGEVVASGLFGKLASLKNIGLGARIGISMSALIALI 180

Query: 177 LTIQLAVVVAGMAALHQWWISALAAAAALLSIVQWIALRNALIKPLHQALDITHAITGGD 236
           +T+  A   A   A   +W  A     A++ I+ W  L  ++++PL + +  T  I GGD
Sbjct: 181 MTLGFAAATAVENAAWSYWYGAATIVGAVIVILTWAGLYFSIMRPLDRLISKTRVIAGGD 240

Query: 237 LSVRIETTRHDELGRLLRSLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSRRTE 296
            +   +  RHD++G+L ++L+QMNVNL +++GD+R NV++IT+AT EIA GN+DLSRRTE
Sbjct: 241 FTANFDVDRHDDMGQLQQALQQMNVNLRSVMGDIRQNVDSITIATHEIAEGNMDLSRRTE 300

Query: 297 AQAANLEETASSMHELASTVRQNADHAVQANDLAGTASAIAMRGGDAVASTGTTMNEISE 356
           AQA++LEETASSM + ASTV+QNAD+A QAN L  +AS +A +GG  V   G TMNEIS 
Sbjct: 301 AQASSLEETASSMQQFASTVKQNADNAQQANRLVLSASEVAGKGGAVVEKVGATMNEISA 360

Query: 357 SSHKIVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKE 416
           S+ +IVDIISLID IAFQTNILALNAAVEAARAGEQG+GFAVVA EVRSLAQRSA AA+E
Sbjct: 361 SAKRIVDIISLIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRSLAQRSANAARE 420

Query: 417 IKELIDASVEKVDIGNRQVEQATSTMRDIVASVQRVSGIMGEIKEATQQQSAGINQVHEA 476
           IK LID SV+KV +GNR V  A +TM  IV SV+ V+ IM EI +A+++QS GI QV+ A
Sbjct: 421 IKHLIDDSVDKVGVGNRLVGDAMATMEGIVNSVKSVTDIMNEITQASREQSDGIEQVNLA 480

Query: 477 ITQMDASTQQNASLVEEAAAAAGSLQEQTVRLLQAISVFK 516
           I+ MD  TQQNA+LVEEAAAAA SL+EQT  L Q+IS+FK
Sbjct: 481 ISHMDQVTQQNAALVEEAAAAAASLKEQTEHLSQSISIFK 520


>ref|YP_546041.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
           [Methylobacillus flagellatus KT]
 gb|ABE50200.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
           [Methylobacillus flagellatus KT]
          Length = 598

 Score =  572 bits (1474), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 291/519 (56%), Positives = 384/519 (73%), Gaps = 4/519 (0%)

Query: 1   MRMNMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEENELLGAPQNLIRHPD 60
           MR+NMPVT  E  L DG++I+S TDL+G ITY+N  FIE+SGF E+EL+G+P NL+RHPD
Sbjct: 1   MRINMPVTNNEYFLQDGQSILSTTDLQGKITYINQDFIEVSGFTEDELIGSPHNLVRHPD 60

Query: 61  MPAEAFADMWATIKGGTPWTGLVKNRSKNGDHYWVRANVTPIRENGQIVGYMSVRTKPER 120
           MP EAFADMWAT+K G PWTG+VKNR KNGD+YWV AN TP+R+NG +VGYMSVR KP R
Sbjct: 61  MPPEAFADMWATLKAGLPWTGMVKNRRKNGDYYWVLANATPMRQNGNVVGYMSVRVKPSR 120

Query: 121 DAVAGAEKLYASIRRGQAKGIALHRGEVVRTGLAGWLGKLSRMQLNSRLNLSMGIMLTIQ 180
             V  A ++YA +R  +  G+ LHRGE+++T     + +  +M L +++ ++   +L   
Sbjct: 121 QQVEQASQIYARLRENKHHGLKLHRGEILKTDFISRVRRAMQMTLKTQVAVTTIAILLAM 180

Query: 181 LAVVVAGMAALHQWWI--SALAAAAALLSIVQWIALRNALIKPLHQALDITHAITGGDLS 238
           + V+ A    L   ++   AL A  A+LS+   ++L N++IKPL +A DI +A+  GDLS
Sbjct: 181 VVVIAATFNGLDISFVVGGALVAMVAMLSLA--VSLSNSVIKPLREATDIANALASGDLS 238

Query: 239 VRIETTRHDELGRLLRSLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSRRTEAQ 298
            +   ++ DE G LLR+L QMNVN+ A+I D+R+N++ I     EIA+GN DLS RTE+Q
Sbjct: 239 HKFSASKTDETGMLLRALNQMNVNIVAMITDIRTNMQRINTGVNEIANGNNDLSARTESQ 298

Query: 299 AANLEETASSMHELASTVRQNADHAVQANDLAGTASAIAMRGGDAVASTGTTMNEISESS 358
           A++LEETASSM ELASTV+QNAD+A QAN L  +AS++A RGG+ +      M  ISES+
Sbjct: 299 ASSLEETASSMEELASTVKQNADNARQANQLVISASSVAARGGEVIGEVRDRMRLISESA 358

Query: 359 HKIVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIK 418
           +KI DII +ID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LA RSAAAAKEIK
Sbjct: 359 NKISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAHRSAAAAKEIK 418

Query: 419 ELIDASVEKVDIGNRQVEQATSTMRDIVASVQRVSGIMGEIKEATQQQSAGINQVHEAIT 478
            LI  SVE+V+ G   V+QA +TM +IVASV+ V+ IM EI  A+ +QSAGI+QV+ A+ 
Sbjct: 419 GLISDSVERVEAGVEFVDQAGTTMTEIVASVRNVTDIMAEISAASIEQSAGIDQVNHAVN 478

Query: 479 QMDASTQQNASLVEEAAAAAGSLQEQTVRLLQAISVFKF 517
            MD  TQ+NA+LVEE+AAAA +L++  ++L +A SVFK 
Sbjct: 479 DMDEVTQRNAALVEESAAAADALRQDVLQLERAASVFKL 517


>ref|YP_004293364.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
           [Nitrosomonas sp. AL212]
 gb|ADZ25202.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
           [Nitrosomonas sp. AL212]
          Length = 573

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 281/524 (53%), Positives = 358/524 (68%), Gaps = 8/524 (1%)

Query: 1   MRMNMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEENELLGAPQNLIRHPD 60
           MR+N+PV+  E  + D   I+S TD KG ITYVN  FIE+SGF   EL+G   N++RHPD
Sbjct: 1   MRVNLPVSNTEYPIDDDTLILSTTDTKGRITYVNQTFIEVSGFSTEELIGKAHNIVRHPD 60

Query: 61  MPAEAFADMWATIKGGTPWTGLVKNRSKNGDHYWVRANVTPIRENGQIVGYMSVRTKPER 120
           MP +AF D+W T++ G PWTGLVKNR KNGD YWV  N TP+ ENG IVGY+SVRTKP R
Sbjct: 61  MPPQAFEDLWRTLQAGKPWTGLVKNRRKNGDFYWVLGNATPLIENGSIVGYLSVRTKPSR 120

Query: 121 DAVAGAEKLYASIRRGQAKGIALHRGEVVRTGLAGWLGKLSRMQLNSRLNLSMGIMLTIQ 180
             +     +Y     G A  + +  G +VRT   G +    +M L  R+ L M I   + 
Sbjct: 121 QVIETIAPIYRQFINGTAGNLKIENGGIVRTDFIGKVTSFLKMTLGKRIALYMSIPTLLL 180

Query: 181 LAVVVAGMAALHQ-----W---WISALAAAAALLSIVQWIALRNALIKPLHQALDITHAI 232
           L  V AG   L Q     W   +I   A    LL  +    +R   ++PL++A++I + +
Sbjct: 181 LNAVGAGWWGLTQAATTSWLNDFILTTATCGTLLMCLAGFLIRQNTLEPLNKAIEIANTL 240

Query: 233 TGGDLSVRIETTRHDELGRLLRSLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLS 292
             GDL  +I     DE G L++SL QM +NL A + DVR++ E++  A+ EIASGNLDLS
Sbjct: 241 AAGDLQSKITNKFSDEFGVLIKSLTQMGINLRATVSDVRNSAESVRQASSEIASGNLDLS 300

Query: 293 RRTEAQAANLEETASSMHELASTVRQNADHAVQANDLAGTASAIAMRGGDAVASTGTTMN 352
           +RTE QA++LEETASSM EL STV+QNAD+A QA+ L+  AS IA+RGG  +     TM+
Sbjct: 301 QRTEEQASSLEETASSMEELTSTVKQNADNARQADHLSTDASNIALRGGQLMNDVVNTMS 360

Query: 353 EISESSHKIVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAA 412
            ISESS+KI  II++ID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAA
Sbjct: 361 LISESSNKIASIINVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAA 420

Query: 413 AAKEIKELIDASVEKVDIGNRQVEQATSTMRDIVASVQRVSGIMGEIKEATQQQSAGINQ 472
           AAKEIK LID SVEKV+ G R V +A +TM +IV S++ V+ IM EI  A+Q+QS+GI Q
Sbjct: 421 AAKEIKNLIDNSVEKVENGTRLVNEAGNTMEEIVTSIKHVAEIMSEITAASQEQSSGIEQ 480

Query: 473 VHEAITQMDASTQQNASLVEEAAAAAGSLQEQTVRLLQAISVFK 516
           V++A+ QMD  TQQNA+LVEEAAA+A SL+ Q   L  AIS+FK
Sbjct: 481 VNQAVAQMDEVTQQNAALVEEAAASAESLENQAKDLTGAISIFK 524


>ref|YP_316164.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
           [Thiobacillus denitrificans ATCC 25259]
 gb|AAZ98359.1| chemotaxis sensory transducer [Thiobacillus denitrificans ATCC
           25259]
          Length = 566

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 291/537 (54%), Positives = 372/537 (69%), Gaps = 24/537 (4%)

Query: 1   MRMNMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEENELLGAPQNLIRHPD 60
           MR+N+PVT     L +G  +VSKTD +G I Y NP F+E SG+ E EL+G P NL+RHPD
Sbjct: 1   MRVNLPVTNHAYELSEGDTLVSKTDREGVIVYANPAFVEASGYTEAELIGQPHNLVRHPD 60

Query: 61  MPAEAFADMWATIKGGTPWTGLVKNRSKNGDHYWVRANVTPIRENGQIVGYMSVRTKPER 120
           MP EAFAD+W+T++ G PWTGLVKNR KNGD YWV+ANVTP+RE+G + G++SVRT+P R
Sbjct: 61  MPPEAFADLWSTLQAGLPWTGLVKNRRKNGDFYWVQANVTPVREDGVLSGFLSVRTRPTR 120

Query: 121 DAVAGAEKLYASIRRGQAKGIALHRGEVVRTGLAGWLGKLSRMQLNSRLNLSMGIMLTIQ 180
           + +A AE+LY  +R G  K + + RG V R GL G L    R+ +N+R+ LS  I  T+ 
Sbjct: 121 EQIAEAEQLYRQLREGSPKRLEIRRGVVSRGGLVGRLLAFRRIPVNTRILLSTAIGATLM 180

Query: 181 LAVVVAGMAALHQWW-ISALAAAAAL-----------------LSIVQWIALRNALIKPL 222
           LA  V G      W+  SALA AA +                 L+++    +   +++PL
Sbjct: 181 LAGGVFG------WYETSALARAAGVDSVIPTVVAAAGAVGAVLTLLFGYFISRTILRPL 234

Query: 223 HQALDITHAITGGDLSVRIETTRHDELGRLLRSLRQMNVNLTAIIGDVRSNVETITLATR 282
            +AL +  AI GGDLS R E T  +E G+L+ +L+QM  N+ A++ D+ SNV +I +AT 
Sbjct: 235 DRALGVARAIAGGDLSHRFEVTAWEETGQLMLALQQMTANMVAVLSDIGSNVGSIRVATG 294

Query: 283 EIASGNLDLSRRTEAQAANLEETASSMHELASTVRQNADHAVQANDLAGTASAIAMRGGD 342
           EIA+GN DL+ RTE+QA+NLE+TA+SM EL  TV+QNA+HA  AN LA  A+ IA++GG 
Sbjct: 295 EIAAGNADLAGRTESQASNLEQTAASMEELTGTVKQNAEHARHANQLADAATDIAVKGGG 354

Query: 343 AVASTGTTMNEISESSHKIVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASE 402
            V     TM  I  SS +I DIIS+ID IAFQTNILALNAAVEAARAGEQGRGFAVVA+E
Sbjct: 355 VVNQVVDTMTSIKASSARISDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATE 414

Query: 403 VRSLAQRSAAAAKEIKELIDASVEKVDIGNRQVEQATSTMRDIVASVQRVSGIMGEIKEA 462
           VR LAQRS  AA+EIK+LI  SVEKV+ G + V+QA   M DIV SV+ V+GI+G I  A
Sbjct: 415 VRHLAQRSTLAAREIKDLIGDSVEKVEQGAKLVDQAGEAMDDIVTSVELVAGIVGGIATA 474

Query: 463 TQQQSAGINQVHEAITQMDASTQQNASLVEEAAAAAGSLQEQTVRLLQAISVFKFNR 519
           +Q+Q AGI QV+EA+ QMD  TQQNA+LVEEAAAAA SL EQ  RL QA+ VF   R
Sbjct: 475 SQEQHAGIEQVNEAVGQMDEITQQNAALVEEAAAAAQSLHEQADRLAQAVGVFSLGR 531


>ref|YP_729194.1| aerotaxis sensor receptor (chemotaxis transducer) transmembrane
           protein [Ralstonia eutropha H16]
 emb|CAJ95829.1| aerotaxis sensor receptor (chemotaxis transducer) transmembrane
           protein [Ralstonia eutropha H16]
          Length = 514

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 266/520 (51%), Positives = 348/520 (66%), Gaps = 10/520 (1%)

Query: 1   MRMNMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEENELLGAPQNLIRHPD 60
           MR N PVT +E    D   ++S TD +  ITY N  F+E+SGF   E+ G P NL+RHPD
Sbjct: 1   MRDNQPVTQREFDFPDNATLMSTTDTQSYITYANAAFVEVSGFTREEIQGQPHNLVRHPD 60

Query: 61  MPAEAFADMWATIKGGTPWTGLVKNRSKNGDHYWVRANVTPIRENGQIVGYMSVRTKPER 120
           MPAEAFADMWAT+KGG PWT LVKNR KNGDHYWVRAN TP+  NG+  GYMSVRTK  R
Sbjct: 61  MPAEAFADMWATLKGGEPWTALVKNRRKNGDHYWVRANATPVVRNGRPAGYMSVRTKATR 120

Query: 121 DAVAGAEKLYASIRRGQAKGIALHRGEVVRTGLAGWLGKLSRMQLNSRLNLSMGIMLTIQ 180
           + +A AEKLY   R GQA     H+G +VRTGL  +      M +  R+ L++  +L + 
Sbjct: 121 EEIAAAEKLYRDFREGQAGSRKFHKGLIVRTGLMAFTSLFQTMPVRWRVRLALAALLPVS 180

Query: 181 L----AVVVAGMAALHQWWISALAAAAALLSIVQWIALRNALIKPLHQALDITHAITGGD 236
           +     + ++GMA      +   A   AL +++    L+  +  PL Q L     +  G+
Sbjct: 181 IIGAWGMGLSGMA------LPGFAGVMALATLLASWWLQRQITTPLEQVLQQALRVASGE 234

Query: 237 LSVRIETTRHDELGRLLRSLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSRRTE 296
               +   R DE+G  LR++ Q+ +    +I DV   V  +  A+ EIA GN+DLS RTE
Sbjct: 235 SQKAVHMNRVDEIGMTLRTISQLGLMFRWLIDDVSGQVVNVQTASNEIARGNIDLSARTE 294

Query: 297 AQAANLEETASSMHELASTVRQNADHAVQANDLAGTASAIAMRGGDAVASTGTTMNEISE 356
             A++++ET++SM ++ STV+ NA+ A QAN L+G+AS  A RGG AV+    TMNEI+E
Sbjct: 295 QAASSVQETSASMAQMTSTVQSNAETAAQANKLSGSASVAAERGGQAVSEVVNTMNEITE 354

Query: 357 SSHKIVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKE 416
           SS +I DII +ID IAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA AAKE
Sbjct: 355 SSRRIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSANAAKE 414

Query: 417 IKELIDASVEKVDIGNRQVEQATSTMRDIVASVQRVSGIMGEIKEATQQQSAGINQVHEA 476
           IK LID SV  V  G + V++A   M DIV+ V+RVS ++ EI  AT +QS+GI+QV  A
Sbjct: 415 IKGLIDVSVHNVASGAKLVDEAGKAMDDIVSQVKRVSDLIAEISAATTEQSSGISQVGGA 474

Query: 477 ITQMDASTQQNASLVEEAAAAAGSLQEQTVRLLQAISVFK 516
           ++ +D  TQQNA+LVE++AAAA SL++Q  RL++A+SVF+
Sbjct: 475 VSDLDNITQQNAALVEQSAAAAESLKQQATRLVEAVSVFR 514


>ref|YP_558616.1| methyl-accepting chemotaxis sensory transducer, Pas/Pac sensor
           [Burkholderia xenovorans LB400]
 gb|ABE30564.1| methyl-accepting chemotaxis sensory transducer, Pas/Pac sensor
           [Burkholderia xenovorans LB400]
          Length = 514

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 261/517 (50%), Positives = 349/517 (67%), Gaps = 4/517 (0%)

Query: 1   MRMNMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEENELLGAPQNLIRHPD 60
           MR N P+T QE    D   ++S TD +  +TY N  F+++SGF   E+ G P N++RHPD
Sbjct: 1   MRNNQPITQQEFEFPDNATLMSTTDTESYVTYANAAFMQVSGFSLEEIQGQPHNVVRHPD 60

Query: 61  MPAEAFADMWATIKGGTPWTGLVKNRSKNGDHYWVRANVTPIRENGQIVGYMSVRTKPER 120
           MP EAFADMW+T+KGG PW+ LVKNR KNGDHYWVRAN TP+  NGQ  GYMSVRT+  R
Sbjct: 61  MPKEAFADMWSTLKGGEPWSALVKNRRKNGDHYWVRANATPVVRNGQPAGYMSVRTQASR 120

Query: 121 DAVAGAEKLYASIRRGQAKGIALHRGEVVRTGLAGWLGKLSRMQLNSRLNLSMGIMLTIQ 180
           + +  AE LY   R G+A     H+G +VRTGL GW   L  M +  R+  ++   LT+ 
Sbjct: 121 EEIVAAEALYRDFREGKAGNRRFHKGLIVRTGLMGWTSVLQTMPVRWRIRSAL---LTLA 177

Query: 181 LAVVVAG-MAALHQWWISALAAAAALLSIVQWIALRNALIKPLHQALDITHAITGGDLSV 239
            AVV+A  +  L     +  A   A++S++  + L   + +PL Q L+    +  G+   
Sbjct: 178 PAVVLAAWLLGLRGVAAAGFAGVCAVVSMLASLWLEAQISRPLEQVLEQALRVASGESQK 237

Query: 240 RIETTRHDELGRLLRSLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSRRTEAQA 299
            +   R DE+G  LR++ Q+ +    +I DV   V  +  A+ EIA GN DLS RTE  A
Sbjct: 238 AVHMNRVDEIGMTLRTISQLGLMFRWLIDDVSGQVINVQTASNEIAQGNHDLSVRTEQAA 297

Query: 300 ANLEETASSMHELASTVRQNADHAVQANDLAGTASAIAMRGGDAVASTGTTMNEISESSH 359
           +N+++TA+SM ++ +TV+ NA  AV AN L+GTA   A  GG AV+   +TMNEI+ESS 
Sbjct: 298 SNVQQTAASMTQMTATVKSNAKTAVHANQLSGTARDAAAEGGRAVSEVVSTMNEITESSR 357

Query: 360 KIVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKE 419
           KI DII +ID IAFQTNILALNAAVEAARAG+QGRGFAVVA EVR+LAQRSA AAKEIK 
Sbjct: 358 KIADIIGVIDGIAFQTNILALNAAVEAARAGDQGRGFAVVAGEVRALAQRSANAAKEIKN 417

Query: 420 LIDASVEKVDIGNRQVEQATSTMRDIVASVQRVSGIMGEIKEATQQQSAGINQVHEAITQ 479
           LI  SVEKV+ G+R V+ A  TM DIVA V+RVS ++ EI  AT++QS+G+ QV +A+++
Sbjct: 418 LIGVSVEKVESGSRLVDDAGKTMDDIVAQVKRVSDLIAEISSATEEQSSGVTQVDQAVSE 477

Query: 480 MDASTQQNASLVEEAAAAAGSLQEQTVRLLQAISVFK 516
           +D  TQQNA+LVE++ AA+ SL++Q  RL+ A+SVF+
Sbjct: 478 LDHITQQNAALVEQSTAASESLKQQATRLVNAVSVFR 514


>ref|YP_004694130.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
           [Nitrosomonas sp. Is79A3]
 gb|AEJ00731.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
           [Nitrosomonas sp. Is79A3]
          Length = 577

 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 284/523 (54%), Positives = 362/523 (69%), Gaps = 8/523 (1%)

Query: 1   MRMNMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEENELLGAPQNLIRHPD 60
           MR+N+PVT  E  + D   IVS TD KG ITYVNP FIE+SGF E EL+G   N++RHPD
Sbjct: 1   MRVNLPVTNTEYPIEDDTLIVSTTDTKGRITYVNPTFIEVSGFCEEELIGKAHNIVRHPD 60

Query: 61  MPAEAFADMWATIKGGTPWTGLVKNRSKNGDHYWVRANVTPIRENGQIVGYMSVRTKPER 120
           +P EAF D+W T+K G PWTGLVKNR KNGD YW+ AN TP+ ENG+I GY+SVRTK  R
Sbjct: 61  VPPEAFEDLWNTLKQGLPWTGLVKNRRKNGDFYWITANATPLLENGKITGYLSVRTKAPR 120

Query: 121 DAVAGAEKLYASIRRGQAKGIALHRGEVVRTGLAGWLGKLSRMQLNSRLNLSMGIMLTIQ 180
            A+     +Y  I  G+A  + + +G+VVRT L G    L +M L+ R+ L M I     
Sbjct: 121 AAIEQVAPIYRKILDGKAPNLRIEKGQVVRTDLIGKFSALFKMTLSKRIALFMAIPAVFL 180

Query: 181 LAVVVAGMAALHQWWI----SALAAAAALLSIVQWIALRNALIK----PLHQALDITHAI 232
           L     G  +L Q  I    S++ A   L  +     L  +++K    PL+QA+D+ + +
Sbjct: 181 LTAGSIGWWSLTQAQIPASLSSMIAGITLTGVAVMFYLAFSMVKNTLTPLNQAIDVANIL 240

Query: 233 TGGDLSVRIETTRHDELGRLLRSLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLS 292
             GDL+ +    R DE G+LL++L QM VNL A + DV+ N  +++ AT EIASGNLDLS
Sbjct: 241 ASGDLTHKFSINRSDEFGQLLKALTQMGVNLRATVLDVQKNALSVSQATSEIASGNLDLS 300

Query: 293 RRTEAQAANLEETASSMHELASTVRQNADHAVQANDLAGTASAIAMRGGDAVASTGTTMN 352
           +RTE QA++LEETASSM EL + VRQN D ++ AN LA TAS I  +GG  +    TTM+
Sbjct: 301 QRTEEQASSLEETASSMEELTAAVRQNTDSSISANQLALTASDITAKGGIMMKEVVTTMS 360

Query: 353 EISESSHKIVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAA 412
            ISESS KI DII++ID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA 
Sbjct: 361 SISESSKKIADIINVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAT 420

Query: 413 AAKEIKELIDASVEKVDIGNRQVEQATSTMRDIVASVQRVSGIMGEIKEATQQQSAGINQ 472
           AAKEIK LID SV+KVD G   V +A  TM +IV S++ V+ IM +I  A+++QS GI Q
Sbjct: 421 AAKEIKTLIDDSVQKVDEGTALVNRAGKTMDEIVGSIKHVTEIMSDITSASKEQSTGIEQ 480

Query: 473 VHEAITQMDASTQQNASLVEEAAAAAGSLQEQTVRLLQAISVF 515
           V++A+TQMD  TQQNA+LVE+AAAAA SL++Q   L+ AIS+F
Sbjct: 481 VNQAVTQMDEVTQQNAALVEQAAAAAASLEQQAHELVGAISIF 523