BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0011.p (299 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773898.1| Holliday junction resolvase [Herbaspirillum ... 259 4e-67 ref|YP_001354639.1| Hollyday junction resolvase [Janthinobacteri... 218 1e-54 ref|YP_004751457.1| putative Holliday junction resolvase [Collim... 216 3e-54 ref|YP_001100978.1| putative holliday junction resolvase [Hermin... 215 6e-54 ref|ZP_08273847.1| Putative Holliday junction resolvase [Oxaloba... 205 7e-51 ref|ZP_04579287.1| holliday junction resolvase [Oxalobacter form... 168 1e-39 ref|ZP_04577153.1| holliday junction resolvase [Oxalobacter form... 164 2e-38 ref|YP_004418664.1| holliday junction resolvase [Pusillimonas sp... 149 5e-34 ref|YP_003845945.1| Holliday junction resolvase YqgF [Gallionell... 137 3e-30 ref|YP_934962.1| Holliday junction resolvase-like protein [Azoar... 135 5e-30 >ref|YP_003773898.1| Holliday junction resolvase [Herbaspirillum seropedicae SmR1] gb|ADJ61990.1| Holliday junction resolvase protein [Herbaspirillum seropedicae SmR1] Length = 128 Score = 259 bits (661), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 126/128 (98%), Positives = 127/128 (99%) Query: 172 LDTILAFDFGLKRIGVAVGNIGLKQAQPLAVISEATNDGKFAAIARLIQEWQPARCVVGL 231 +DTILAFDFGLKRIGVAVGN GLKQAQPLAVISEATNDGKFAAIARLIQEWQPARCVVGL Sbjct: 1 MDTILAFDFGLKRIGVAVGNTGLKQAQPLAVISEATNDGKFAAIARLIQEWQPARCVVGL 60 Query: 232 PLHPDGAEHEMSVRCRRFANQLHGRYGVEVVLVDERYSSAVIQHQRGEQIDDQAAAIILQ 291 PLHPDGAEHEMSVRCRRFANQLHGRYGVEVVLVDERYSSAVIQHQRGEQIDDQAAAIILQ Sbjct: 61 PLHPDGAEHEMSVRCRRFANQLHGRYGVEVVLVDERYSSAVIQHQRGEQIDDQAAAIILQ 120 Query: 292 QYFDDAHS 299 QYFDDAHS Sbjct: 121 QYFDDAHS 128 >ref|YP_001354639.1| Hollyday junction resolvase [Janthinobacterium sp. Marseille] gb|ABR90226.1| Hollyday junction resolvase [Janthinobacterium sp. Marseille] Length = 131 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 101/125 (80%), Positives = 110/125 (88%) Query: 172 LDTILAFDFGLKRIGVAVGNIGLKQAQPLAVISEATNDGKFAAIARLIQEWQPARCVVGL 231 ++T+L FDFGLKRIGVAVGN LKQAQPL +IS ATND KFAAIA L+Q+WQPA C+VGL Sbjct: 1 METVLGFDFGLKRIGVAVGNTLLKQAQPLTIISAATNDAKFAAIAELVQQWQPALCIVGL 60 Query: 232 PLHPDGAEHEMSVRCRRFANQLHGRYGVEVVLVDERYSSAVIQHQRGEQIDDQAAAIILQ 291 P HPDG EHEM+VRCRRFANQLHGR+ V VLVDERYSSAVI HQRGE IDDQAAAIILQ Sbjct: 61 PRHPDGEEHEMTVRCRRFANQLHGRFNVATVLVDERYSSAVISHQRGELIDDQAAAIILQ 120 Query: 292 QYFDD 296 QYFDD Sbjct: 121 QYFDD 125 >ref|YP_004751457.1| putative Holliday junction resolvase [Collimonas fungivorans Ter331] gb|AEK60634.1| Putative Holliday junction resolvase [Collimonas fungivorans Ter331] Length = 136 Score = 216 bits (551), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 107/133 (80%), Positives = 113/133 (84%), Gaps = 5/133 (3%) Query: 164 TGLRGQGRLDTILAFDFGLKRIGVAVGNIGLKQAQPLAVISEATNDGKFAAIARLIQEWQ 223 TGL G T+LAFDFGLKRIGVAVGN LKQAQPL VIS ATNDGKFA I+ LI+EWQ Sbjct: 2 TGLTG-----TVLAFDFGLKRIGVAVGNTLLKQAQPLQVISAATNDGKFAEISVLIKEWQ 56 Query: 224 PARCVVGLPLHPDGAEHEMSVRCRRFANQLHGRYGVEVVLVDERYSSAVIQHQRGEQIDD 283 P CVVGLPLHPDGA HEMSVRC+RFANQLHGRY V VLVDERYSSAVI+ QRGE IDD Sbjct: 57 PVLCVVGLPLHPDGATHEMSVRCQRFANQLHGRYDVATVLVDERYSSAVIKQQRGEVIDD 116 Query: 284 QAAAIILQQYFDD 296 +AAAIILQQYFDD Sbjct: 117 RAAAIILQQYFDD 129 >ref|YP_001100978.1| putative holliday junction resolvase [Herminiimonas arsenicoxydans] emb|CAL62857.1| Putative holliday junction resolvase [Herminiimonas arsenicoxydans] Length = 131 Score = 215 bits (548), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 100/125 (80%), Positives = 110/125 (88%) Query: 172 LDTILAFDFGLKRIGVAVGNIGLKQAQPLAVISEATNDGKFAAIARLIQEWQPARCVVGL 231 ++T+L FDFGLKRIGVAVGN LKQAQPL +IS ATND KFAAIA L+ +WQPA C+VGL Sbjct: 1 METVLGFDFGLKRIGVAVGNTLLKQAQPLTIISAATNDAKFAAIAELVTQWQPALCIVGL 60 Query: 232 PLHPDGAEHEMSVRCRRFANQLHGRYGVEVVLVDERYSSAVIQHQRGEQIDDQAAAIILQ 291 P HPDGAEHEM+VRCRRFANQLHGR+ V VLVDERYSSAVI HQRG+ IDDQAAAIILQ Sbjct: 61 PRHPDGAEHEMTVRCRRFANQLHGRFDVATVLVDERYSSAVISHQRGDLIDDQAAAIILQ 120 Query: 292 QYFDD 296 QYFDD Sbjct: 121 QYFDD 125 >ref|ZP_08273847.1| Putative Holliday junction resolvase [Oxalobacteraceae bacterium IMCC9480] gb|EGF32683.1| Putative Holliday junction resolvase [Oxalobacteraceae bacterium IMCC9480] Length = 135 Score = 205 bits (521), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 94/125 (75%), Positives = 109/125 (87%) Query: 172 LDTILAFDFGLKRIGVAVGNIGLKQAQPLAVISEATNDGKFAAIARLIQEWQPARCVVGL 231 ++T+L FDFGLKRIGVAVGN ++QAQ L +I ATND KFAAIA L+ WQPARC+VG+ Sbjct: 1 METVLGFDFGLKRIGVAVGNTVIRQAQALTIIDAATNDAKFAAIAVLVASWQPARCIVGM 60 Query: 232 PLHPDGAEHEMSVRCRRFANQLHGRYGVEVVLVDERYSSAVIQHQRGEQIDDQAAAIILQ 291 P HPDGAEHEMSVRCRRFANQLHGRYG+ VLVDERY+SAV+ QRGE+IDD+AAA+ILQ Sbjct: 61 PFHPDGAEHEMSVRCRRFANQLHGRYGLPTVLVDERYTSAVLGQQRGERIDDRAAALILQ 120 Query: 292 QYFDD 296 QYFDD Sbjct: 121 QYFDD 125 >ref|ZP_04579287.1| holliday junction resolvase [Oxalobacter formigenes OXCC13] gb|EEO30260.1| holliday junction resolvase [Oxalobacter formigenes OXCC13] Length = 149 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 77/138 (55%), Positives = 104/138 (75%), Gaps = 4/138 (2%) Query: 166 LRGQGRLD----TILAFDFGLKRIGVAVGNIGLKQAQPLAVISEATNDGKFAAIARLIQE 221 L G+ +++ ILAFDFGLKRIG A+GN + A+PL +I+ ND +FA I LI+E Sbjct: 11 LSGKEKMNNTPGVILAFDFGLKRIGTAIGNELSRTARPLEIINAEANDIRFAKIGELIEE 70 Query: 222 WQPARCVVGLPLHPDGAEHEMSVRCRRFANQLHGRYGVEVVLVDERYSSAVIQHQRGEQI 281 WQP + +VGLP +PDG EHEM+ RC+RFANQL GR+ +E+++VDERYSS+V+ QRG+ Sbjct: 71 WQPVKLIVGLPSYPDGTEHEMTRRCKRFANQLRGRFSLEIIMVDERYSSSVLHFQRGKAD 130 Query: 282 DDQAAAIILQQYFDDAHS 299 D AAA+ILQQYFD++ S Sbjct: 131 DAHAAALILQQYFDESIS 148 >ref|ZP_04577153.1| holliday junction resolvase [Oxalobacter formigenes HOxBLS] gb|EEO28115.1| holliday junction resolvase [Oxalobacter formigenes HOxBLS] Length = 133 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 76/124 (61%), Positives = 94/124 (75%) Query: 174 TILAFDFGLKRIGVAVGNIGLKQAQPLAVISEATNDGKFAAIARLIQEWQPARCVVGLPL 233 ILAFDFGLKRIG A+GN K A+PL +I ND +FA I LI EWQPA+ VVGLP Sbjct: 7 VILAFDFGLKRIGCAIGNDLSKSARPLKIIRAEANDKRFAEIGELIVEWQPAKLVVGLPS 66 Query: 234 HPDGAEHEMSVRCRRFANQLHGRYGVEVVLVDERYSSAVIQHQRGEQIDDQAAAIILQQY 293 HPDG EH+M+ RCRRFANQLHGR+ ++ +LVDERY+S+V+ + G+ D AAA+ILQQY Sbjct: 67 HPDGTEHDMTRRCRRFANQLHGRFALDTILVDERYTSSVLNFKPGQADDAHAAALILQQY 126 Query: 294 FDDA 297 FD+ Sbjct: 127 FDET 130 >ref|YP_004418664.1| holliday junction resolvase [Pusillimonas sp. T7-7] gb|AEC22040.1| holliday junction resolvase [Pusillimonas sp. T7-7] Length = 137 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 72/124 (58%), Positives = 92/124 (74%), Gaps = 2/124 (1%) Query: 174 TILAFDFGLKRIGVAVGNIGLKQAQPLAVISEATNDGKFAAIARLIQEWQPARCVVGLPL 233 T+LAFD+G K+IGVA+GN +QA+PL ++ T + +F+AIA+L+++WQP + VVGLPL Sbjct: 8 TLLAFDYGTKKIGVAIGNTLTRQARPLDILFPVTREQRFSAIAKLLKDWQPDKVVVGLPL 67 Query: 234 HPDGAEHEMSVRCRRFANQLHGRYGVEVVLVDERYSSAVIQHQRGEQIDDQ--AAAIILQ 291 DG+E S+RCRRFANQLHGR+GVE VLVDER SS Q G DD AAAIILQ Sbjct: 68 ATDGSEQYASLRCRRFANQLHGRFGVETVLVDERGSSMEAQQMLGNNTDDDAVAAAIILQ 127 Query: 292 QYFD 295 +Y D Sbjct: 128 RYLD 131 >ref|YP_003845945.1| Holliday junction resolvase YqgF [Gallionella capsiferriformans ES-2] gb|ADL54181.1| Holliday junction resolvase YqgF [Gallionella capsiferriformans ES-2] Length = 170 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 68/133 (51%), Positives = 85/133 (63%), Gaps = 10/133 (7%) Query: 174 TILAFDFGLKRIGVAVGNIGLKQAQPLAVISEATNDGKFAAIARLIQEWQPARCVVGLPL 233 T+LAFDFG +RIGVAVGN A+PL I+E N+ +F+AI +L+ EWQP VVGLP Sbjct: 18 TLLAFDFGTQRIGVAVGNTFSSSAEPLTTIAEEKNELRFSAITKLVAEWQPCALVVGLPC 77 Query: 234 HPDGAEHEMSVRCRRFANQLHGRYGVEVVLVDERYSSAVIQHQRGEQ----------IDD 283 DG+ HE++ C+RFA +LHGRYG+ +LVDERYSS Q Q ID Sbjct: 78 SDDGSPHELTALCQRFAKRLHGRYGLTTLLVDERYSSLAASEQLNRQGVRGRDQKALIDQ 137 Query: 284 QAAAIILQQYFDD 296 AA ILQ YFD+ Sbjct: 138 YAAQQILQAYFDE 150 >ref|YP_934962.1| Holliday junction resolvase-like protein [Azoarcus sp. BH72] sp|A1KB70.1|RUVX_AZOSB RecName: Full=Putative Holliday junction resolvase emb|CAL96076.1| putative Hollyday junction resolvase [Azoarcus sp. BH72] Length = 156 Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 73/138 (52%), Positives = 90/138 (65%), Gaps = 12/138 (8%) Query: 174 TILAFDFGLKRIGVAVGNIGLKQAQPLAVISEATNDGKFAAIARLIQEWQPARCVVGLPL 233 T+LAFDFGL RIGVAVG + + A PL + E N +FA IARL+ EW+P VVGLP Sbjct: 17 TLLAFDFGLARIGVAVGELETRHANPLLTVHEEANAARFAIIARLLDEWKPVALVVGLPG 76 Query: 234 HPDGAEHEMSVRCRRFANQLHGRYGVEVVLVDERYSSAVIQHQ-----------RGEQID 282 H DG EHE++ RCRRFANQLHGR+G+ V LVDER SSA + Q R +D Sbjct: 77 HLDGREHELAPRCRRFANQLHGRFGIPVHLVDERLSSAAAERQLHDAGLSGWQARKPVLD 136 Query: 283 DQAAAIILQQYFD-DAHS 299 AA +ILQ + D +AH+ Sbjct: 137 AVAAQLILQHFLDLNAHA 154