BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0113.p (117 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776642.1| transthyreretyn-like protein [Herbaspirillum... 231 3e-59 ref|YP_001352208.1| transthyretin-like protein [Janthinobacteriu... 202 2e-50 ref|YP_004754095.1| transthyretin family protein [Collimonas fun... 190 6e-47 gb|ADI18831.1| transthyretin-like protein [uncultured beta prote... 182 1e-44 ref|YP_442596.1| transthyretin family protein [Burkholderia thai... 174 5e-42 ref|ZP_02374403.1| transthyretin family protein [Burkholderia th... 172 1e-41 ref|YP_004227955.1| hydroxyisourate hydrolase [Burkholderia sp. ... 170 6e-41 ref|ZP_08272879.1| Transthyretin family protein [Oxalobacteracea... 170 8e-41 ref|ZP_02356051.1| transthyretin family protein [Burkholderia ok... 169 1e-40 ref|ZP_02886391.1| hydroxyisourate hydrolase [Burkholderia grami... 169 1e-40 >ref|YP_003776642.1| transthyreretyn-like protein [Herbaspirillum seropedicae SmR1] gb|ADJ64734.1| transthyreretyn-like (hydroxyisourate hydrolase) protein [Herbaspirillum seropedicae SmR1] Length = 117 Score = 231 bits (589), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 114/117 (97%), Positives = 114/117 (97%) Query: 1 MGKLSTHVLDITKGKPGAGVKLALYAVGPGGKTLLKQAVTNSDGRCDEPLLAGEALQVGK 60 MGKLSTHVLDITKGKPG GVKLALYAVGP GKTLLKQAVTNSDGRCDEPLLAGEALQVGK Sbjct: 1 MGKLSTHVLDITKGKPGVGVKLALYAVGPVGKTLLKQAVTNSDGRCDEPLLAGEALQVGK 60 Query: 61 YELVFAAGDYFAAQGEPLPEPRFVDEVVIAFGIADASQNYHVPLVVSPWAYSTYRGS 117 YELVFAAGDYFAAQGE LPEPRFVDEVVIAFGIADASQNYHVPLVVSPWAYSTYRGS Sbjct: 61 YELVFAAGDYFAAQGEQLPEPRFVDEVVIAFGIADASQNYHVPLVVSPWAYSTYRGS 117 >ref|YP_001352208.1| transthyretin-like protein [Janthinobacterium sp. Marseille] gb|ABR90011.1| Transthyretin-like protein [Janthinobacterium sp. Marseille] Length = 118 Score = 202 bits (513), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 100/118 (84%), Positives = 103/118 (87%), Gaps = 1/118 (0%) Query: 1 MGKLSTHVLDITKGKPGAGVKLALYAV-GPGGKTLLKQAVTNSDGRCDEPLLAGEALQVG 59 MGKLSTHVLDITKGKPGAGVKLALY V G K +LK AVTN DGRCD PLL G +QVG Sbjct: 1 MGKLSTHVLDITKGKPGAGVKLALYTVDAAGNKEILKNAVTNDDGRCDAPLLQGAEMQVG 60 Query: 60 KYELVFAAGDYFAAQGEPLPEPRFVDEVVIAFGIADASQNYHVPLVVSPWAYSTYRGS 117 KYELVFAAGDYFAAQG LP PRFVDEVV+AFGIADASQNYHVPLVVSPWAYSTYRGS Sbjct: 61 KYELVFAAGDYFAAQGVDLPSPRFVDEVVLAFGIADASQNYHVPLVVSPWAYSTYRGS 118 >ref|YP_004754095.1| transthyretin family protein [Collimonas fungivorans Ter331] gb|AEK63272.1| transthyretin family protein [Collimonas fungivorans Ter331] Length = 121 Score = 190 bits (483), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 90/117 (76%), Positives = 98/117 (83%) Query: 1 MGKLSTHVLDITKGKPGAGVKLALYAVGPGGKTLLKQAVTNSDGRCDEPLLAGEALQVGK 60 GKLSTHVLDIT+GKPGAGVK+ALYAV P G+ LL AVTN DGR D PLL GE +Q G+ Sbjct: 5 FGKLSTHVLDITQGKPGAGVKIALYAVTPAGRNLLNSAVTNQDGRVDAPLLQGEEMQAGQ 64 Query: 61 YELVFAAGDYFAAQGEPLPEPRFVDEVVIAFGIADASQNYHVPLVVSPWAYSTYRGS 117 YELVF+AGDYFAAQG LP PRFVD V +AFGIA A QNYHVPLVVSPW+YSTYRGS Sbjct: 65 YELVFSAGDYFAAQGIDLPSPRFVDRVTLAFGIAHADQNYHVPLVVSPWSYSTYRGS 121 >gb|ADI18831.1| transthyretin-like protein [uncultured beta proteobacterium HF0010_04H24] Length = 117 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 83/117 (70%), Positives = 99/117 (84%) Query: 1 MGKLSTHVLDITKGKPGAGVKLALYAVGPGGKTLLKQAVTNSDGRCDEPLLAGEALQVGK 60 MGKLSTHVLDI G+PGAGVK+AL++V P GK LLK +TNSDGRC+ PLL G++++VG+ Sbjct: 1 MGKLSTHVLDIAHGRPGAGVKVALFSVAPEGKVLLKMDMTNSDGRCNSPLLEGDSMKVGQ 60 Query: 61 YELVFAAGDYFAAQGEPLPEPRFVDEVVIAFGIADASQNYHVPLVVSPWAYSTYRGS 117 YELVF AGDYFAAQG LP PRF+D V ++FGIA +NYHVPLVVSPW+YSTYRGS Sbjct: 61 YELVFNAGDYFAAQGVELPSPRFIDLVTLSFGIAHTDENYHVPLVVSPWSYSTYRGS 117 >ref|YP_442596.1| transthyretin family protein [Burkholderia thailandensis E264] gb|ABC37915.1| transthyretin family protein [Burkholderia thailandensis E264] Length = 194 Score = 174 bits (440), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 80/117 (68%), Positives = 94/117 (80%) Query: 1 MGKLSTHVLDITKGKPGAGVKLALYAVGPGGKTLLKQAVTNSDGRCDEPLLAGEALQVGK 60 MGKL+THVLD G+PGA +K+ L+A+ GG LLK A+TN DGRCD PLL G+AL G Sbjct: 78 MGKLTTHVLDTAHGRPGAAIKIELHAISGGGSRLLKTALTNDDGRCDAPLLEGDALAAGT 137 Query: 61 YELVFAAGDYFAAQGEPLPEPRFVDEVVIAFGIADASQNYHVPLVVSPWAYSTYRGS 117 YELVF AGDYFAAQG LPEPRFVD VV+ FG+AD + +YHVPL+VSPW+YSTYRGS Sbjct: 138 YELVFHAGDYFAAQGVALPEPRFVDLVVLRFGVADPAAHYHVPLLVSPWSYSTYRGS 194 >ref|ZP_02374403.1| transthyretin family protein [Burkholderia thailandensis TXDOH] ref|ZP_02388272.1| transthyretin family protein [Burkholderia thailandensis Bt4] ref|ZP_05587068.1| transthyretin family protein [Burkholderia thailandensis E264] Length = 117 Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 80/117 (68%), Positives = 94/117 (80%) Query: 1 MGKLSTHVLDITKGKPGAGVKLALYAVGPGGKTLLKQAVTNSDGRCDEPLLAGEALQVGK 60 MGKL+THVLD G+PGA +K+ L+A+ GG LLK A+TN DGRCD PLL G+AL G Sbjct: 1 MGKLTTHVLDTAHGRPGAAIKIELHAISGGGSRLLKTALTNDDGRCDAPLLEGDALAAGT 60 Query: 61 YELVFAAGDYFAAQGEPLPEPRFVDEVVIAFGIADASQNYHVPLVVSPWAYSTYRGS 117 YELVF AGDYFAAQG LPEPRFVD VV+ FG+AD + +YHVPL+VSPW+YSTYRGS Sbjct: 61 YELVFHAGDYFAAQGVALPEPRFVDLVVLRFGVADPAAHYHVPLLVSPWSYSTYRGS 117 >ref|YP_004227955.1| hydroxyisourate hydrolase [Burkholderia sp. CCGE1001] gb|ADX54895.1| hydroxyisourate hydrolase [Burkholderia sp. CCGE1001] Length = 117 Score = 170 bits (431), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 78/117 (66%), Positives = 95/117 (81%) Query: 1 MGKLSTHVLDITKGKPGAGVKLALYAVGPGGKTLLKQAVTNSDGRCDEPLLAGEALQVGK 60 MGKL+THVLD G+PGAG+K+ L+A+ + LK +TN DGRCDEPLL G+AL G+ Sbjct: 1 MGKLTTHVLDTANGRPGAGIKVELFALSGDTRRALKTTLTNDDGRCDEPLLQGDALVAGE 60 Query: 61 YELVFAAGDYFAAQGEPLPEPRFVDEVVIAFGIADASQNYHVPLVVSPWAYSTYRGS 117 YELVFAAGDYFA+ G +PEPRFVD VV+ FGIADA+ +YHVPL+VSPW+YSTYRGS Sbjct: 61 YELVFAAGDYFASIGTRVPEPRFVDRVVLRFGIADAAAHYHVPLLVSPWSYSTYRGS 117 >ref|ZP_08272879.1| Transthyretin family protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF33643.1| Transthyretin family protein [Oxalobacteraceae bacterium IMCC9480] Length = 117 Score = 170 bits (430), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 81/117 (69%), Positives = 92/117 (78%) Query: 1 MGKLSTHVLDITKGKPGAGVKLALYAVGPGGKTLLKQAVTNSDGRCDEPLLAGEALQVGK 60 MGKLSTHVLDIT GKP AGV + LYA+ G+ LL+ +TNSDGRCD PLLAG+ L G Sbjct: 1 MGKLSTHVLDITSGKPAAGVAIQLYAIESAGRRLLRSVITNSDGRCDAPLLAGDELLPGL 60 Query: 61 YELVFAAGDYFAAQGEPLPEPRFVDEVVIAFGIADASQNYHVPLVVSPWAYSTYRGS 117 YELVFAAG YF QG +P PRFVD V +AFGIA ++NYHVPL+VSPWAYSTYRGS Sbjct: 61 YELVFAAGAYFEGQGVVVPLPRFVDCVTLAFGIASTAENYHVPLLVSPWAYSTYRGS 117 >ref|ZP_02356051.1| transthyretin family protein [Burkholderia oklahomensis EO147] ref|ZP_02363195.1| transthyretin family protein [Burkholderia oklahomensis C6786] Length = 117 Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 80/117 (68%), Positives = 93/117 (79%) Query: 1 MGKLSTHVLDITKGKPGAGVKLALYAVGPGGKTLLKQAVTNSDGRCDEPLLAGEALQVGK 60 MGKL+THVLD G+PGA +K+ L+A+ G LLK A+TN DGRCD PLL G+AL G Sbjct: 1 MGKLTTHVLDTAHGRPGAAIKIELHALSGDGYRLLKTALTNDDGRCDAPLLEGDALTAGT 60 Query: 61 YELVFAAGDYFAAQGEPLPEPRFVDEVVIAFGIADASQNYHVPLVVSPWAYSTYRGS 117 YELVF AGDYFAAQG LPEPRFVD VV+ FGIAD + +YHVPL+VSPW+YSTYRGS Sbjct: 61 YELVFHAGDYFAAQGVALPEPRFVDLVVLRFGIADPAAHYHVPLLVSPWSYSTYRGS 117 >ref|ZP_02886391.1| hydroxyisourate hydrolase [Burkholderia graminis C4D1M] gb|EDT08045.1| hydroxyisourate hydrolase [Burkholderia graminis C4D1M] Length = 117 Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 78/117 (66%), Positives = 95/117 (81%) Query: 1 MGKLSTHVLDITKGKPGAGVKLALYAVGPGGKTLLKQAVTNSDGRCDEPLLAGEALQVGK 60 MGKL+THVLD G+PGAG+K+ L+A+ + LK +TN DGRCDEPLL G+AL G+ Sbjct: 1 MGKLTTHVLDTANGRPGAGIKVELFALSGDTRRALKTTLTNDDGRCDEPLLQGDALVPGE 60 Query: 61 YELVFAAGDYFAAQGEPLPEPRFVDEVVIAFGIADASQNYHVPLVVSPWAYSTYRGS 117 YELVFAAGDYFA+ G +PEPRFVD VV+ FGIADA+ +YHVPL+VSPW+YSTYRGS Sbjct: 61 YELVFAAGDYFASIGTKVPEPRFVDRVVLRFGIADANAHYHVPLLVSPWSYSTYRGS 117