BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0096.p (200 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776655.1| transcription regulator protein [Herbaspiril... 407 e-112 ref|YP_004752318.1| TetR family transcriptional regulator [Colli... 236 1e-60 emb|CBJ40435.1| putative transcription regulator protein, TetR f... 179 2e-43 ref|ZP_00945942.1| Transcriptional regulator, TetR family [Ralst... 177 6e-43 gb|AEG71768.1| putative transcription regulator protein, TetR fa... 177 8e-43 ref|ZP_05876989.1| transcriptional regulator [Vibrio furnissii C... 177 1e-42 ref|NP_522376.1| transcription regulator protein [Ralstonia sola... 176 1e-42 emb|CAQ36714.1| hypothetical protein RSMK02904 [Ralstonia solana... 176 3e-42 ref|YP_003748073.1| TetR family transcriptional regulator [Ralst... 175 3e-42 ref|NP_231051.1| TetR family transcriptional regulator [Vibrio c... 175 4e-42 >ref|YP_003776655.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64747.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 200 Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust. Identities = 199/200 (99%), Positives = 200/200 (100%) Query: 1 MRKKSEERRQAMIDIAAEVFNEIGFEAASMAEISARIGGSKATLYNYFNSKEEIFVEVMI 60 MRKKSEERRQAMIDIAAEVFNEIGFEAASMAEISARIGGSKATLYNYFNSKEEIFVEVMI Sbjct: 1 MRKKSEERRQAMIDIAAEVFNEIGFEAASMAEISARIGGSKATLYNYFNSKEEIFVEVMI 60 Query: 61 KQVGCQFEELFMALRNEDDVKGGLLRLARHYLRVVFRPEIVAVKRLGIYYAGKSNLGPLL 120 KQVGCQFEELFMALRNEDDVKGGLLRLARHYLRVVFRPEIVAVKRLGIYYAGKSNLGPLL Sbjct: 61 KQVGCQFEELFMALRNEDDVKGGLLRLARHYLRVVFRPEIVAVKRLGIYYAGKSNLGPLL 120 Query: 121 YERGPKRGWTRIAEFLEAKMEEGKLHRTDPWLAAMQYRGLMEAEWMEVRMLNVVTDIAED 180 YERGPKRGWTRIAEFL+AKMEEGKLHRTDPWLAAMQYRGLMEAEWMEVRMLNVVTDIAED Sbjct: 121 YERGPKRGWTRIAEFLQAKMEEGKLHRTDPWLAAMQYRGLMEAEWMEVRMLNVVTDIAED 180 Query: 181 QLDASAQRAVEAFLYLYQPR 200 QLDASAQRAVEAFLYLYQPR Sbjct: 181 QLDASAQRAVEAFLYLYQPR 200 >ref|YP_004752318.1| TetR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK61495.1| Transcriptional regulator, TetR family [Collimonas fungivorans Ter331] Length = 199 Score = 236 bits (603), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 110/197 (55%), Positives = 150/197 (76%) Query: 1 MRKKSEERRQAMIDIAAEVFNEIGFEAASMAEISARIGGSKATLYNYFNSKEEIFVEVMI 60 MRKKSEERRQA++D+AA++FNE GFE SM++ISAR+GGSKATLYNYF+SKEEIFVEV++ Sbjct: 1 MRKKSEERRQAILDVAAQMFNESGFEGTSMSDISARLGGSKATLYNYFSSKEEIFVEVLL 60 Query: 61 KQVGCQFEELFMALRNEDDVKGGLLRLARHYLRVVFRPEIVAVKRLGIYYAGKSNLGPLL 120 +Q G QF+ F +L DD++ L R YL+ +PEI+A +RL +Y+A +S LG ++ Sbjct: 61 RQAGAQFDLTFASLVESDDLRAVLQRFGAMYLQAKLQPEIIAARRLILYHAERSQLGQVM 120 Query: 121 YERGPKRGWTRIAEFLEAKMEEGKLHRTDPWLAAMQYRGLMEAEWMEVRMLNVVTDIAED 180 YERGPK+G TR+AEF + M ++ D WLAA+Q+ GLMEAEW+EVRML VVT + Sbjct: 121 YERGPKKGTTRMAEFFASAMARKQIREADAWLAALQFHGLMEAEWIEVRMLGVVTAVTAA 180 Query: 181 QLDASAQRAVEAFLYLY 197 ++ S +RAV+AF+ +Y Sbjct: 181 KVRDSVERAVDAFMRIY 197 >emb|CBJ40435.1| putative transcription regulator protein, TetR family [Ralstonia solanacearum CMR15] Length = 202 Score = 179 bits (454), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 90/197 (45%), Positives = 122/197 (61%) Query: 1 MRKKSEERRQAMIDIAAEVFNEIGFEAASMAEISARIGGSKATLYNYFNSKEEIFVEVMI 60 MRKK+EE+RQ++ID A VF E+GF+ ASM++I+AR G SKATLYNYF+SKEE+F E+M Sbjct: 1 MRKKTEEKRQSIIDAALHVFREVGFDQASMSDIAARSGASKATLYNYFSSKEEMFAEIMS 60 Query: 61 KQVGCQFEELFMALRNEDDVKGGLLRLARHYLRVVFRPEIVAVKRLGIYYAGKSNLGPLL 120 + E F L++ V L HYL + RP +VA++RL I +SNLG Sbjct: 61 GTAADEIREAFAQLKSSGPVADTLAVFGEHYLNAILRPSLVAIRRLAICEGDRSNLGRAF 120 Query: 121 YERGPKRGWTRIAEFLEAKMEEGKLHRTDPWLAAMQYRGLMEAEWMEVRMLNVVTDIAED 180 YE GPKRGW +AEFL ME G L + + +AA L EAE +E+ +L V DI+ Sbjct: 121 YEHGPKRGWAMLAEFLGEAMEAGALKQRNTDIAAAHLHALYEAECVELCLLGVPVDISPG 180 Query: 181 QLDASAQRAVEAFLYLY 197 ++ RAV+ F+ Y Sbjct: 181 RIAEGVARAVDVFMAAY 197 >ref|ZP_00945942.1| Transcriptional regulator, TetR family [Ralstonia solanacearum UW551] ref|YP_002257562.1| hypothetical protein RSIPO_03870 [Ralstonia solanacearum IPO1609] gb|EAP71599.1| Transcriptional regulator, TetR family [Ralstonia solanacearum UW551] emb|CAQ59448.1| hypothetical protein RSIPO_03870 [Ralstonia solanacearum IPO1609] Length = 207 Score = 177 bits (450), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 90/201 (44%), Positives = 124/201 (61%), Gaps = 1/201 (0%) Query: 1 MRKKSEERRQAMIDIAAEVFNEIGFEAASMAEISARIGGSKATLYNYFNSKEEIFVEVMI 60 MRKK+EE+RQ++ID A VF E+GF+ ASM++I+AR G SKATLYNYF+SKEE+F E+M Sbjct: 1 MRKKTEEKRQSIIDAAFHVFREVGFDQASMSDIAARSGASKATLYNYFSSKEEMFAEIMS 60 Query: 61 KQVGCQFEELFMALRNEDDVKGGLLRLARHYLRVVFRPEIVAVKRLGIYYAGKSNLGPLL 120 + E F L++ V L HYL + RP ++++RL I +SNLG Sbjct: 61 GTAADEIHEAFAQLKSSGPVADTLAVFGEHYLNAILRPSTLSIRRLAICEGDRSNLGRTF 120 Query: 121 YERGPKRGWTRIAEFLEAKMEEGKLHRTDPWLAAMQYRGLMEAEWMEVRMLNVVTDIAED 180 YERGP+ GW +A+FL ME G L R + +AA L EAE++E +L V DI+ D Sbjct: 121 YERGPRIGWAMLADFLGEAMEAGMLKRRNTDIAAAHLHALYEAEFVEFCLLGVPVDISPD 180 Query: 181 QLDASAQRAVEAFLYLY-QPR 200 ++ RAV+ F+ Y PR Sbjct: 181 RIAEGVARAVDVFMAAYGAPR 201 >gb|AEG71768.1| putative transcription regulator protein, TetR family [Ralstonia solanacearum Po82] Length = 207 Score = 177 bits (449), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 88/197 (44%), Positives = 122/197 (61%) Query: 1 MRKKSEERRQAMIDIAAEVFNEIGFEAASMAEISARIGGSKATLYNYFNSKEEIFVEVMI 60 MRKK+EE+RQ++ID A VF E+GF+ ASM++I+AR G SKATLYNYF+SKEE+F E+M Sbjct: 1 MRKKTEEKRQSIIDAAFHVFREVGFDQASMSDIAARSGASKATLYNYFSSKEEMFAEIMS 60 Query: 61 KQVGCQFEELFMALRNEDDVKGGLLRLARHYLRVVFRPEIVAVKRLGIYYAGKSNLGPLL 120 + E F L++ V L HYL + RP ++++RL I +SNLG Sbjct: 61 GTAADEIHEAFAQLKSSGPVADTLAVFGEHYLNAILRPSTLSIRRLAICEGDRSNLGRTF 120 Query: 121 YERGPKRGWTRIAEFLEAKMEEGKLHRTDPWLAAMQYRGLMEAEWMEVRMLNVVTDIAED 180 YERGP+ GW +A+FL ME G L R + +AA L EAE++E +L V DI+ D Sbjct: 121 YERGPRIGWAMLADFLGEAMEAGMLKRRNTDIAAAHLHALYEAEFVEFCLLGVPVDISPD 180 Query: 181 QLDASAQRAVEAFLYLY 197 ++ RAV+ F+ Y Sbjct: 181 RIAEGVARAVDVFMAAY 197 >ref|ZP_05876989.1| transcriptional regulator [Vibrio furnissii CIP 102972] gb|EEX41270.1| transcriptional regulator [Vibrio furnissii CIP 102972] Length = 199 Score = 177 bits (448), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 84/197 (42%), Positives = 129/197 (65%) Query: 1 MRKKSEERRQAMIDIAAEVFNEIGFEAASMAEISARIGGSKATLYNYFNSKEEIFVEVMI 60 MR KSEE+RQA+++IA F + GFE SM+ I+ +GGSKATLYNYF+SKE IF+ VM Sbjct: 1 MRVKSEEKRQAILEIAKNSFTQQGFEQTSMSYIAKELGGSKATLYNYFSSKEAIFIAVMK 60 Query: 61 KQVGCQFEELFMALRNEDDVKGGLLRLARHYLRVVFRPEIVAVKRLGIYYAGKSNLGPLL 120 Q + F+AL + D++ LL ++L V P+ +A+ R+ I+ A +S++G Sbjct: 61 SSASEQIAQSFLALDPKRDMQTSLLEFGYNFLSSVMTPDAMAIYRMAIHEADRSSVGRKF 120 Query: 121 YERGPKRGWTRIAEFLEAKMEEGKLHRTDPWLAAMQYRGLMEAEWMEVRMLNVVTDIAED 180 YE GPK GWT +++++++++++G L R D W AAMQ++ L+ AE +E L + + Sbjct: 121 YENGPKLGWTHLSDYIDSQVKKGLLKRCDTWFAAMQFKALLSAEHIEPFALGAIDAPSAS 180 Query: 181 QLDASAQRAVEAFLYLY 197 +L A+ QRAV+ FL LY Sbjct: 181 ELKAATQRAVDTFLVLY 197 >ref|NP_522376.1| transcription regulator protein [Ralstonia solanacearum GMI1000] emb|CAD17966.1| probable transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 207 Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 89/197 (45%), Positives = 121/197 (61%) Query: 1 MRKKSEERRQAMIDIAAEVFNEIGFEAASMAEISARIGGSKATLYNYFNSKEEIFVEVMI 60 MRKK+EE+RQ++ID A VF E+GF+ ASM++I+AR G SKATLYNYF+SKEE+F E+M Sbjct: 1 MRKKTEEKRQSIIDAAFHVFREVGFDQASMSDIAARSGASKATLYNYFSSKEEMFAEIMS 60 Query: 61 KQVGCQFEELFMALRNEDDVKGGLLRLARHYLRVVFRPEIVAVKRLGIYYAGKSNLGPLL 120 + E F L++ V L+ HYL + RP +A++RL I +SNLG Sbjct: 61 GTAADEIREAFAQLKSSGPVADTLVVFGEHYLNAILRPSTLAIRRLAICEGDRSNLGRAF 120 Query: 121 YERGPKRGWTRIAEFLEAKMEEGKLHRTDPWLAAMQYRGLMEAEWMEVRMLNVVTDIAED 180 YE GPK GW +AEFL ME G L + D +AA L EAE +E+ +L V DI+ Sbjct: 121 YEHGPKLGWAMLAEFLREAMEAGALKQRDTDIAAAHLHALYEAECVELCLLGVPLDISPG 180 Query: 181 QLDASAQRAVEAFLYLY 197 ++ RAV+ F+ Y Sbjct: 181 RIAEGVARAVDVFMAAY 197 >emb|CAQ36714.1| hypothetical protein RSMK02904 [Ralstonia solanacearum MolK2] Length = 207 Score = 176 bits (445), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 89/201 (44%), Positives = 124/201 (61%), Gaps = 1/201 (0%) Query: 1 MRKKSEERRQAMIDIAAEVFNEIGFEAASMAEISARIGGSKATLYNYFNSKEEIFVEVMI 60 MRKK+EE+RQ++ID A VF E+GF+ ASM++I+AR G SKATLYNYF+SKEE+F E+M Sbjct: 1 MRKKTEEKRQSIIDAAFHVFREVGFDQASMSDIAARSGASKATLYNYFSSKEEMFAEIMS 60 Query: 61 KQVGCQFEELFMALRNEDDVKGGLLRLARHYLRVVFRPEIVAVKRLGIYYAGKSNLGPLL 120 + E F L++ V L HYL + RP ++++RL I +S+LG Sbjct: 61 GTAADEIHEAFAQLKSSGPVADTLAVFGEHYLNAILRPSTLSIRRLAICEGDRSSLGRTF 120 Query: 121 YERGPKRGWTRIAEFLEAKMEEGKLHRTDPWLAAMQYRGLMEAEWMEVRMLNVVTDIAED 180 YERGP+ GW +A+FL ME G L R + +AA L EAE++E +L V DI+ D Sbjct: 121 YERGPRIGWAMLADFLGEAMEAGMLKRRNTDIAAAHLHALYEAEFVEFCLLGVPVDISPD 180 Query: 181 QLDASAQRAVEAFLYLY-QPR 200 ++ RAV+ F+ Y PR Sbjct: 181 RIAEGVARAVDVFMAAYGAPR 201 >ref|YP_003748073.1| TetR family transcriptional regulator [Ralstonia solanacearum CFBP2957] emb|CBJ53681.1| putative transcription regulator protein, TetR family [Ralstonia solanacearum CFBP2957] Length = 207 Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 87/197 (44%), Positives = 122/197 (61%) Query: 1 MRKKSEERRQAMIDIAAEVFNEIGFEAASMAEISARIGGSKATLYNYFNSKEEIFVEVMI 60 MRKK+EE+RQ++ID A VF E+GF+ ASM++I+AR G SKATLYNYF+SKEE+F E+M Sbjct: 1 MRKKTEEKRQSIIDAAFHVFREVGFDQASMSDIAARSGASKATLYNYFSSKEEMFAEIMS 60 Query: 61 KQVGCQFEELFMALRNEDDVKGGLLRLARHYLRVVFRPEIVAVKRLGIYYAGKSNLGPLL 120 + E F L++ V L HYL + RP ++++RL I +SNLG Sbjct: 61 GTAADEIHEAFAQLKSSGPVADTLAVFGEHYLNAILRPSTLSIRRLAICEGDRSNLGRTF 120 Query: 121 YERGPKRGWTRIAEFLEAKMEEGKLHRTDPWLAAMQYRGLMEAEWMEVRMLNVVTDIAED 180 YERGP+ GW +A+FL ME G L R + +AA L EAE++E +L V DI+ + Sbjct: 121 YERGPRIGWAMLADFLGEAMEAGMLKRRNTDIAAAHLHALYEAEFVEFCLLGVPVDISPE 180 Query: 181 QLDASAQRAVEAFLYLY 197 ++ RAV+ F+ Y Sbjct: 181 RIAEGVARAVDVFMAAY 197 >ref|NP_231051.1| TetR family transcriptional regulator [Vibrio cholerae O1 biovar El Tor str. N16961] ref|ZP_01678568.1| transcriptional regulator, TetR family [Vibrio cholerae 2740-80] ref|ZP_01680674.1| transcriptional regulator, TetR family [Vibrio cholerae V52] ref|YP_001216965.1| TetR family transcriptional regulator [Vibrio cholerae O395] ref|ZP_01948361.1| transcriptional regulator, TetR family [Vibrio cholerae 1587] ref|ZP_01970408.1| transcriptional regulator, TetR family [Vibrio cholerae NCTC 8457] ref|ZP_01973972.1| transcriptional regulator, TetR family [Vibrio cholerae B33] ref|ZP_01979655.1| transcriptional regulator, TetR family [Vibrio cholerae MZO-2] ref|ZP_01982633.1| transcriptional regulator, TetR family [Vibrio cholerae 623-39] ref|ZP_02957602.1| transcriptional regulator, TetR family [Vibrio cholerae MZO-3] ref|YP_002810130.1| TetR family transcriptional regulator [Vibrio cholerae M66-2] ref|ZP_04919722.1| transcriptional regulator, TetR family [Vibrio cholerae V51] ref|ZP_04961105.1| transcriptional regulator, TetR family [Vibrio cholerae AM-19226] ref|ZP_05237876.1| transcriptional regulator [Vibrio cholerae MO10] ref|ZP_05419736.1| transcriptional regulator TetR family [Vibrio cholera CIRS 101] ref|ZP_06030044.1| transcriptional regulator TetR family [Vibrio cholerae INDRE 91/1] ref|ZP_06036987.1| transcriptional regulator TetR family [Vibrio cholerae RC27] ref|ZP_06049892.1| transcriptional regulator TetR family [Vibrio cholerae CT 5369-93] ref|ZP_07008320.1| transcriptional regulator [Vibrio cholerae MAK 757] gb|AAF94565.1| transcriptional regulator, TetR family [Vibrio cholerae O1 biovar El Tor str. N16961] gb|EAX57034.1| transcriptional regulator, TetR family [Vibrio cholerae 2740-80] gb|EAX62549.1| transcriptional regulator, TetR family [Vibrio cholerae V52] gb|EAY35174.1| transcriptional regulator, TetR family [Vibrio cholerae 1587] gb|EAZ49697.1| transcriptional regulator, TetR family [Vibrio cholerae V51] gb|EAZ74273.1| transcriptional regulator, TetR family [Vibrio cholerae NCTC 8457] gb|EAZ78346.1| transcriptional regulator, TetR family [Vibrio cholerae B33] gb|ABQ20946.1| transcriptional regulator, TetR family [Vibrio cholerae O395] gb|EDL72687.1| transcriptional regulator, TetR family [Vibrio cholerae 623-39] gb|EDM53435.1| transcriptional regulator, TetR family [Vibrio cholerae MZO-2] gb|EDN15755.1| transcriptional regulator, TetR family [Vibrio cholerae AM-19226] gb|EDT88102.1| transcriptional regulator, TetR family [Vibrio cholerae MZO-3] gb|ACP05679.1| transcriptional regulator, TetR family [Vibrio cholerae M66-2] gb|ACP09533.1| transcriptional regulator, TetR family [Vibrio cholerae O395] gb|EET22645.1| transcriptional regulator [Vibrio cholerae MO10] gb|EET92260.1| transcriptional regulator TetR family [Vibrio cholera CIRS 101] gb|EEY40817.1| transcriptional regulator TetR family [Vibrio cholerae RC27] gb|EEY47769.1| transcriptional regulator TetR family [Vibrio cholerae INDRE 91/1] gb|EEY50975.1| transcriptional regulator TetR family [Vibrio cholerae CT 5369-93] gb|EFH78896.1| transcriptional regulator [Vibrio cholerae MAK 757] gb|AEA78481.1| Transcriptional regulator, TetR family [Vibrio cholerae LMA3894-4] gb|EGR02978.1| bacterial regulatory s, tetR family protein [Vibrio cholerae HCUF01] gb|EGR03690.1| bacterial regulatory s, tetR family protein [Vibrio cholerae HC-49A2] gb|EGS48839.1| bacterial regulatory s, tetR family protein [Vibrio cholerae HC-48A1] gb|EGS48875.1| bacterial regulatory s, tetR family protein [Vibrio cholerae HC-70A1] gb|EGS49833.1| bacterial regulatory s, tetR family protein [Vibrio cholerae HC-40A1] gb|EGS62629.1| bacterial regulatory s, tetR family protein [Vibrio cholerae HC-02A1] gb|EGS64238.1| bacterial regulatory s, tetR family protein [Vibrio cholerae HFU-02] gb|EGS71332.1| bacterial regulatory s, tetR family protein [Vibrio cholerae HC-38A1] Length = 200 Score = 175 bits (443), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 84/197 (42%), Positives = 124/197 (62%) Query: 1 MRKKSEERRQAMIDIAAEVFNEIGFEAASMAEISARIGGSKATLYNYFNSKEEIFVEVMI 60 MR KSEE+RQA+++IA + F + GFE SM+ I+ +GGSKATLYNYF+SKEEIF VM Sbjct: 1 MRVKSEEKRQAILEIAKDSFTKQGFEQTSMSHIAKMLGGSKATLYNYFSSKEEIFTAVME 60 Query: 61 KQVGCQFEELFMALRNEDDVKGGLLRLARHYLRVVFRPEIVAVKRLGIYYAGKSNLGPLL 120 Q F++L + ++K LL ++L V + +++ R+ I+ A +S +G Sbjct: 61 SSATEQIALSFLSLDHNRELKPALLEFGYNFLNSVLTQDAMSIYRMAIHEADRSAIGRHF 120 Query: 121 YERGPKRGWTRIAEFLEAKMEEGKLHRTDPWLAAMQYRGLMEAEWMEVRMLNVVTDIAED 180 YE GPKRGW R++ ++ ++E G L DPW+AAM ++ L+ A++ E L + Sbjct: 121 YENGPKRGWARLSRYITCQIECGSLKECDPWIAAMHFKALLSAQYFEPFSLGAIEKPTSS 180 Query: 181 QLDASAQRAVEAFLYLY 197 +L A+ QRAVEAFL LY Sbjct: 181 ELKATTQRAVEAFLCLY 197