BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0062.p (248 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776687.1| 3-isopropylmalate dehydratase small subunit ... 451 e-125 ref|YP_001353860.1| 3-isopropylmalate dehydratase small subunit ... 392 e-107 ref|YP_004752522.1| 3-isopropylmalate dehydratase small subunit ... 391 e-107 ref|YP_001099520.1| isopropylmalate isomerase small subunit [Her... 389 e-106 ref|ZP_08272576.1| 3-isopropylmalate dehydratase small subunit [... 387 e-106 ref|YP_001860529.1| 3-isopropylmalate dehydratase, small subunit... 374 e-102 ref|ZP_06842526.1| 3-isopropylmalate dehydratase, small subunit ... 371 e-101 ref|ZP_02882227.1| 3-isopropylmalate dehydratase, small subunit ... 371 e-101 ref|YP_004231340.1| 3-isopropylmalate dehydratase small subunit ... 371 e-101 ref|ZP_03270809.1| 3-isopropylmalate dehydratase, small subunit ... 370 e-101 >ref|YP_003776687.1| 3-isopropylmalate dehydratase small subunit [Herbaspirillum seropedicae SmR1] gb|ADJ64779.1| 3-isopropylmalate dehydratase (small subunit) protein [Herbaspirillum seropedicae SmR1] Length = 215 Score = 451 bits (1160), Expect = e-125, Method: Compositional matrix adjust. Identities = 215/215 (100%), Positives = 215/215 (100%) Query: 34 MNKFIVHEGLVAPLDRANVDTDAIIPKQFLKSIKRSGFGPNLFDEWRYLDHGEPGMDNSK 93 MNKFIVHEGLVAPLDRANVDTDAIIPKQFLKSIKRSGFGPNLFDEWRYLDHGEPGMDNSK Sbjct: 1 MNKFIVHEGLVAPLDRANVDTDAIIPKQFLKSIKRSGFGPNLFDEWRYLDHGEPGMDNSK 60 Query: 94 RPLNPDFVLNQERYQGSSILLSRKNFGCGSSREHAPWALDQFGFRAVIAPSFADIFFNNC 153 RPLNPDFVLNQERYQGSSILLSRKNFGCGSSREHAPWALDQFGFRAVIAPSFADIFFNNC Sbjct: 61 RPLNPDFVLNQERYQGSSILLSRKNFGCGSSREHAPWALDQFGFRAVIAPSFADIFFNNC 120 Query: 154 YKNGLLPIVLTEQQVDHLFNEVKAFPGYRLVIDLEKQIVSTTNGSQTYPFEISEFRKYCL 213 YKNGLLPIVLTEQQVDHLFNEVKAFPGYRLVIDLEKQIVSTTNGSQTYPFEISEFRKYCL Sbjct: 121 YKNGLLPIVLTEQQVDHLFNEVKAFPGYRLVIDLEKQIVSTTNGSQTYPFEISEFRKYCL 180 Query: 214 LNGFDDIGLTLRKADTIRAYEEKHLHEQPWLSNTI 248 LNGFDDIGLTLRKADTIRAYEEKHLHEQPWLSNTI Sbjct: 181 LNGFDDIGLTLRKADTIRAYEEKHLHEQPWLSNTI 215 >ref|YP_001353860.1| 3-isopropylmalate dehydratase small subunit [Janthinobacterium sp. Marseille] gb|ABR88621.1| 3-isopropylmalate dehydratase small subunit [Janthinobacterium sp. Marseille] Length = 215 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 180/215 (83%), Positives = 197/215 (91%) Query: 34 MNKFIVHEGLVAPLDRANVDTDAIIPKQFLKSIKRSGFGPNLFDEWRYLDHGEPGMDNSK 93 M+KF + GLVAPLDRANVDTDAIIPKQFLKSIKR+GFGPNLFDEWRYLD GEPG DNS Sbjct: 1 MDKFTILNGLVAPLDRANVDTDAIIPKQFLKSIKRTGFGPNLFDEWRYLDQGEPGKDNSN 60 Query: 94 RPLNPDFVLNQERYQGSSILLSRKNFGCGSSREHAPWALDQFGFRAVIAPSFADIFFNNC 153 RPLNPDFVLNQ RYQG+SILL+RKNFGCGSSREHAPWAL Q+GFRA++APSFADIFFNNC Sbjct: 61 RPLNPDFVLNQSRYQGASILLARKNFGCGSSREHAPWALSQYGFRAIVAPSFADIFFNNC 120 Query: 154 YKNGLLPIVLTEQQVDHLFNEVKAFPGYRLVIDLEKQIVSTTNGSQTYPFEISEFRKYCL 213 YKNGLLP+ L+E QVDHLFNEVKAFPG+ LVIDLEKQ++ T+NGS TYPFEI FRKYCL Sbjct: 121 YKNGLLPVALSEAQVDHLFNEVKAFPGFHLVIDLEKQVIGTSNGSVTYPFEIDAFRKYCL 180 Query: 214 LNGFDDIGLTLRKADTIRAYEEKHLHEQPWLSNTI 248 LNGFDDIGLTL+KAD IRA+EE+HL QPWLSNTI Sbjct: 181 LNGFDDIGLTLQKADKIRAFEERHLAAQPWLSNTI 215 >ref|YP_004752522.1| 3-isopropylmalate dehydratase small subunit [Collimonas fungivorans Ter331] gb|AEK61699.1| 3-isopropylmalate dehydratase small subunit [Collimonas fungivorans Ter331] Length = 216 Score = 391 bits (1004), Expect = e-107, Method: Compositional matrix adjust. Identities = 179/216 (82%), Positives = 201/216 (93%) Query: 33 LMNKFIVHEGLVAPLDRANVDTDAIIPKQFLKSIKRSGFGPNLFDEWRYLDHGEPGMDNS 92 +MNKF V +GLVAPLDRANVDTDAIIPKQFLKSI+R+GFGPNLFDEWRYLDHGEPGMDNS Sbjct: 1 MMNKFTVVDGLVAPLDRANVDTDAIIPKQFLKSIQRTGFGPNLFDEWRYLDHGEPGMDNS 60 Query: 93 KRPLNPDFVLNQERYQGSSILLSRKNFGCGSSREHAPWALDQFGFRAVIAPSFADIFFNN 152 +RPLNPDFVLNQ+RYQG+SILL+RKNFGCGSSREHAPWALDQ+GFRAVIAPSFADIFFNN Sbjct: 61 RRPLNPDFVLNQQRYQGASILLTRKNFGCGSSREHAPWALDQYGFRAVIAPSFADIFFNN 120 Query: 153 CYKNGLLPIVLTEQQVDHLFNEVKAFPGYRLVIDLEKQIVSTTNGSQTYPFEISEFRKYC 212 C+KNGLLP+VL E Q+D LF+EVKAFPGYRL IDL+KQ+VST NG+ +PFE+ EFRKYC Sbjct: 121 CFKNGLLPLVLPEAQIDRLFDEVKAFPGYRLQIDLDKQLVSTANGNVAFPFEVGEFRKYC 180 Query: 213 LLNGFDDIGLTLRKADTIRAYEEKHLHEQPWLSNTI 248 LLNG DDIGLTLR++D IR +EE+HL QPWLSNTI Sbjct: 181 LLNGLDDIGLTLRQSDKIRDFEERHLFAQPWLSNTI 216 >ref|YP_001099520.1| isopropylmalate isomerase small subunit [Herminiimonas arsenicoxydans] emb|CAL61393.1| 3-isopropylmalate dehydratase small subunit (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) [Herminiimonas arsenicoxydans] Length = 215 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 179/215 (83%), Positives = 196/215 (91%) Query: 34 MNKFIVHEGLVAPLDRANVDTDAIIPKQFLKSIKRSGFGPNLFDEWRYLDHGEPGMDNSK 93 M KF + +GLVAPLDRANVDTDAIIPKQFLKSIKR+GFGPNLFDEWRYLD GEPG DN+ Sbjct: 1 MEKFNILDGLVAPLDRANVDTDAIIPKQFLKSIKRTGFGPNLFDEWRYLDQGEPGKDNTN 60 Query: 94 RPLNPDFVLNQERYQGSSILLSRKNFGCGSSREHAPWALDQFGFRAVIAPSFADIFFNNC 153 RPLNPDFVLNQ RYQG+ ILL+RKNFGCGSSREHAPWAL Q+GFRA++APSFADIFFNNC Sbjct: 61 RPLNPDFVLNQPRYQGAQILLARKNFGCGSSREHAPWALSQYGFRAIVAPSFADIFFNNC 120 Query: 154 YKNGLLPIVLTEQQVDHLFNEVKAFPGYRLVIDLEKQIVSTTNGSQTYPFEISEFRKYCL 213 YKNGLLP+ LTE QVDHLFNEVKAFPG+ LVIDLEKQI++T+NGS YPF+I FRKYCL Sbjct: 121 YKNGLLPVTLTEAQVDHLFNEVKAFPGFHLVIDLEKQIIATSNGSVAYPFDIDAFRKYCL 180 Query: 214 LNGFDDIGLTLRKADTIRAYEEKHLHEQPWLSNTI 248 LNGFDDIGLTL+KAD IRAYEE+HL QPWLSNTI Sbjct: 181 LNGFDDIGLTLQKADKIRAYEERHLAAQPWLSNTI 215 >ref|ZP_08272576.1| 3-isopropylmalate dehydratase small subunit [Oxalobacteraceae bacterium IMCC9480] gb|EGF33965.1| 3-isopropylmalate dehydratase small subunit [Oxalobacteraceae bacterium IMCC9480] Length = 215 Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust. Identities = 175/215 (81%), Positives = 202/215 (93%) Query: 34 MNKFIVHEGLVAPLDRANVDTDAIIPKQFLKSIKRSGFGPNLFDEWRYLDHGEPGMDNSK 93 MNKF +H+GLVAPLDRANVDTDAIIPKQFLKSI+R+GFGPNLFDEWRYLDHGEPG DNS+ Sbjct: 1 MNKFNLHDGLVAPLDRANVDTDAIIPKQFLKSIQRTGFGPNLFDEWRYLDHGEPGRDNSR 60 Query: 94 RPLNPDFVLNQERYQGSSILLSRKNFGCGSSREHAPWALDQFGFRAVIAPSFADIFFNNC 153 RPLNPDFVLNQ RY G+SILL+RKNFGCGSSREHAPWALDQ+GFRA+IAPS+ADIFFNNC Sbjct: 61 RPLNPDFVLNQPRYTGASILLTRKNFGCGSSREHAPWALDQYGFRAIIAPSYADIFFNNC 120 Query: 154 YKNGLLPIVLTEQQVDHLFNEVKAFPGYRLVIDLEKQIVSTTNGSQTYPFEISEFRKYCL 213 +KNGLLPIVLTE Q+DHLF+EV+AFPG+RLVIDLE+Q+VSTTNGS+++PFE+ FRKYCL Sbjct: 121 FKNGLLPIVLTEAQIDHLFDEVRAFPGFRLVIDLERQLVSTTNGSESFPFEVDTFRKYCL 180 Query: 214 LNGFDDIGLTLRKADTIRAYEEKHLHEQPWLSNTI 248 NG DDIGLTL++AD IRA+EE+HL +PWL+N I Sbjct: 181 QNGLDDIGLTLQQADKIRAFEERHLAGKPWLTNAI 215 >ref|YP_001860529.1| 3-isopropylmalate dehydratase, small subunit [Burkholderia phymatum STM815] sp|B2JQE2.1|LEUD_BURP8 RecName: Full=3-isopropylmalate dehydratase small subunit; AltName: Full=Alpha-IPM isomerase; Short=IPMI; AltName: Full=Isopropylmalate isomerase gb|ACC73483.1| 3-isopropylmalate dehydratase, small subunit [Burkholderia phymatum STM815] Length = 217 Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust. Identities = 171/215 (79%), Positives = 193/215 (89%) Query: 34 MNKFIVHEGLVAPLDRANVDTDAIIPKQFLKSIKRSGFGPNLFDEWRYLDHGEPGMDNSK 93 M+KFIVH G+VAPLDR NVDTDAIIPKQFLKSIKR+GFGPN FDEWRYLDHGEPG DNSK Sbjct: 1 MDKFIVHTGVVAPLDRENVDTDAIIPKQFLKSIKRTGFGPNAFDEWRYLDHGEPGQDNSK 60 Query: 94 RPLNPDFVLNQERYQGSSILLSRKNFGCGSSREHAPWALDQFGFRAVIAPSFADIFFNNC 153 RPLNPDFVLNQ RYQG+SILL+R+NFGCGSSREHAPWAL Q+GFRA+IAPSFADIF+NNC Sbjct: 61 RPLNPDFVLNQPRYQGASILLTRQNFGCGSSREHAPWALQQYGFRAIIAPSFADIFYNNC 120 Query: 154 YKNGLLPIVLTEQQVDHLFNEVKAFPGYRLVIDLEKQIVSTTNGSQTYPFEISEFRKYCL 213 +KNGLLPIVLTEQQVDHLFNE AF G++L +DLEKQ+V TT+G YPFE++ FRKYCL Sbjct: 121 FKNGLLPIVLTEQQVDHLFNETFAFNGFQLTVDLEKQVVRTTDGGTEYPFEVAAFRKYCL 180 Query: 214 LNGFDDIGLTLRKADTIRAYEEKHLHEQPWLSNTI 248 LNGFDDIGLTLR AD IR YE + + +QPWL+N + Sbjct: 181 LNGFDDIGLTLRHADKIRQYEAERIAKQPWLNNRL 215 >ref|ZP_06842526.1| 3-isopropylmalate dehydratase, small subunit [Burkholderia sp. Ch1-1] gb|EFG69942.1| 3-isopropylmalate dehydratase, small subunit [Burkholderia sp. Ch1-1] Length = 217 Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust. Identities = 168/215 (78%), Positives = 193/215 (89%) Query: 34 MNKFIVHEGLVAPLDRANVDTDAIIPKQFLKSIKRSGFGPNLFDEWRYLDHGEPGMDNSK 93 M+KFIVH G+VAPLDR NVDTDAIIPKQFLKSIKR+GFGPN FDEWRYLDHGEPG DNSK Sbjct: 1 MDKFIVHTGVVAPLDRENVDTDAIIPKQFLKSIKRTGFGPNAFDEWRYLDHGEPGQDNSK 60 Query: 94 RPLNPDFVLNQERYQGSSILLSRKNFGCGSSREHAPWALDQFGFRAVIAPSFADIFFNNC 153 RPLNPDFVLNQ RYQG+S+LL+RKNFGCGSSREHAPWAL+Q+GFRA+IAPSFADIF+NNC Sbjct: 61 RPLNPDFVLNQPRYQGASVLLARKNFGCGSSREHAPWALEQYGFRALIAPSFADIFYNNC 120 Query: 154 YKNGLLPIVLTEQQVDHLFNEVKAFPGYRLVIDLEKQIVSTTNGSQTYPFEISEFRKYCL 213 +KNGLLPIVLTEQQVDHLFNE AF G++L +DLE Q+V T++G YPFE++ FRKYCL Sbjct: 121 FKNGLLPIVLTEQQVDHLFNETYAFNGFKLTVDLEAQVVRTSDGGTEYPFEVAAFRKYCL 180 Query: 214 LNGFDDIGLTLRKADTIRAYEEKHLHEQPWLSNTI 248 LNGFDDIGLTLR AD IR +E + + +QPWL++ I Sbjct: 181 LNGFDDIGLTLRHADKIRQFEAERIAKQPWLAHRI 215 >ref|ZP_02882227.1| 3-isopropylmalate dehydratase, small subunit [Burkholderia graminis C4D1M] gb|EDT12472.1| 3-isopropylmalate dehydratase, small subunit [Burkholderia graminis C4D1M] Length = 217 Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust. Identities = 169/215 (78%), Positives = 192/215 (89%) Query: 34 MNKFIVHEGLVAPLDRANVDTDAIIPKQFLKSIKRSGFGPNLFDEWRYLDHGEPGMDNSK 93 M+KFIVH G+VAPLDR NVDTDAIIPKQFLKSIKR+GFGPN FDEWRYLDHGEPG DNSK Sbjct: 1 MDKFIVHTGVVAPLDRENVDTDAIIPKQFLKSIKRTGFGPNAFDEWRYLDHGEPGQDNSK 60 Query: 94 RPLNPDFVLNQERYQGSSILLSRKNFGCGSSREHAPWALDQFGFRAVIAPSFADIFFNNC 153 RPLNPDFVLNQ RYQG+S+LL+RKNFGCGSSREHAPWAL Q+GFRA+IAPSFADIF+NNC Sbjct: 61 RPLNPDFVLNQPRYQGASVLLARKNFGCGSSREHAPWALQQYGFRAIIAPSFADIFYNNC 120 Query: 154 YKNGLLPIVLTEQQVDHLFNEVKAFPGYRLVIDLEKQIVSTTNGSQTYPFEISEFRKYCL 213 +KNGLLPIVLTEQQVDHLFNE AF G++L IDL+KQ+V T +G YPFE++ FRKYCL Sbjct: 121 FKNGLLPIVLTEQQVDHLFNETYAFNGFQLTIDLDKQVVRTADGGTEYPFEVAAFRKYCL 180 Query: 214 LNGFDDIGLTLRKADTIRAYEEKHLHEQPWLSNTI 248 LNGFDDIGLTLR AD IR +E + + +QPWL++ I Sbjct: 181 LNGFDDIGLTLRHADKIRQFEAERIAKQPWLAHRI 215 >ref|YP_004231340.1| 3-isopropylmalate dehydratase small subunit [Burkholderia sp. CCGE1001] gb|ADX58280.1| 3-isopropylmalate dehydratase, small subunit [Burkholderia sp. CCGE1001] Length = 217 Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust. Identities = 168/215 (78%), Positives = 193/215 (89%) Query: 34 MNKFIVHEGLVAPLDRANVDTDAIIPKQFLKSIKRSGFGPNLFDEWRYLDHGEPGMDNSK 93 M+KFIVH G+VAPLDR NVDTDAIIPKQFLKSIKR+GFGPN FDEWRYLDHGEPG DNSK Sbjct: 1 MDKFIVHTGVVAPLDRENVDTDAIIPKQFLKSIKRTGFGPNAFDEWRYLDHGEPGQDNSK 60 Query: 94 RPLNPDFVLNQERYQGSSILLSRKNFGCGSSREHAPWALDQFGFRAVIAPSFADIFFNNC 153 RPLNPDFVLNQ RYQG+S+LL+RKNFGCGSSREHAPWAL Q+GFRA+IAPSFADIF+NNC Sbjct: 61 RPLNPDFVLNQPRYQGASVLLARKNFGCGSSREHAPWALQQYGFRAIIAPSFADIFYNNC 120 Query: 154 YKNGLLPIVLTEQQVDHLFNEVKAFPGYRLVIDLEKQIVSTTNGSQTYPFEISEFRKYCL 213 +KNGLLPIVL+EQQVDHLFNE AF G++L IDLE Q+V T++G+ YPFE++ FRKYCL Sbjct: 121 FKNGLLPIVLSEQQVDHLFNETYAFNGFQLTIDLEAQVVRTSDGATEYPFEVAAFRKYCL 180 Query: 214 LNGFDDIGLTLRKADTIRAYEEKHLHEQPWLSNTI 248 LNGFDDIGLTLR AD IR +E + + +QPWL++ I Sbjct: 181 LNGFDDIGLTLRHADKIRQFEAERIAKQPWLAHRI 215 >ref|ZP_03270809.1| 3-isopropylmalate dehydratase, small subunit [Burkholderia sp. H160] gb|EDZ97610.1| 3-isopropylmalate dehydratase, small subunit [Burkholderia sp. H160] Length = 217 Score = 370 bits (950), Expect = e-101, Method: Compositional matrix adjust. Identities = 168/215 (78%), Positives = 191/215 (88%) Query: 34 MNKFIVHEGLVAPLDRANVDTDAIIPKQFLKSIKRSGFGPNLFDEWRYLDHGEPGMDNSK 93 M+KFIVH G+VAPLDR NVDTDAIIPKQFLKSIKR+GFGPN FDEWRYLDHGEPG DNSK Sbjct: 1 MDKFIVHTGVVAPLDRENVDTDAIIPKQFLKSIKRTGFGPNAFDEWRYLDHGEPGQDNSK 60 Query: 94 RPLNPDFVLNQERYQGSSILLSRKNFGCGSSREHAPWALDQFGFRAVIAPSFADIFFNNC 153 RPLNPDFVLNQ RYQG+S+LL+RKNFGCGSSREHAPWAL Q+GFRA+IAPSFADIF+NNC Sbjct: 61 RPLNPDFVLNQPRYQGASVLLARKNFGCGSSREHAPWALQQYGFRALIAPSFADIFYNNC 120 Query: 154 YKNGLLPIVLTEQQVDHLFNEVKAFPGYRLVIDLEKQIVSTTNGSQTYPFEISEFRKYCL 213 +KNGLLPIVL+EQQVDHLFNE AF G++L +DLE Q+V T +G YPFE++ FRKYCL Sbjct: 121 FKNGLLPIVLSEQQVDHLFNETYAFNGFKLTVDLEAQVVRTADGGTEYPFEVAAFRKYCL 180 Query: 214 LNGFDDIGLTLRKADTIRAYEEKHLHEQPWLSNTI 248 LNGFDDIGLTLR AD IR +E + L +QPWL+N + Sbjct: 181 LNGFDDIGLTLRHADKIRQFEAERLAKQPWLNNRL 215