BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0010.p (240 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776732.1| hypothetical protein Hsero_3343 [Herbaspiril... 499 e-140 ref|ZP_06688283.1| gluconate 2-dehydrogenase subunit gamma [Achr... 347 8e-94 ref|YP_003979724.1| gluconate 2-dehydrogenase subunit 3 [Achromo... 342 4e-92 gb|EGP43041.1| gluconate 2-dehydrogenase subunit 3 [Achromobacte... 336 2e-90 gb|EFV87198.1| hypothetical protein HMPREF0005_05629 [Achromobac... 331 5e-89 ref|YP_003910246.1| gluconate 2-dehydrogenase (acceptor) [Burkho... 331 6e-89 ref|YP_584650.1| gluconate 2-dehydrogenase subunit 3 [Cupriavidu... 320 9e-86 ref|ZP_02892319.1| Gluconate 2-dehydrogenase (acceptor) [Burkhol... 273 1e-71 ref|YP_002797331.1| gluconate dehydrogenase small subunit [Azoto... 272 3e-71 ref|ZP_02908522.1| Gluconate 2-dehydrogenase (acceptor) [Burkhol... 271 9e-71 >ref|YP_003776732.1| hypothetical protein Hsero_3343 [Herbaspirillum seropedicae SmR1] gb|ADJ64824.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 499 bits (1286), Expect = e-140, Method: Compositional matrix adjust. Identities = 240/240 (100%), Positives = 240/240 (100%) Query: 1 MSQDKEPRRRFLRQVLAIVPAASTLGGATTVAVSQAAMADSSEPGKPRAYTPTYFTAAEW 60 MSQDKEPRRRFLRQVLAIVPAASTLGGATTVAVSQAAMADSSEPGKPRAYTPTYFTAAEW Sbjct: 1 MSQDKEPRRRFLRQVLAIVPAASTLGGATTVAVSQAAMADSSEPGKPRAYTPTYFTAAEW 60 Query: 61 AFLNAAVDHLIPSDQYGAGALETGVPEFIDRQMETPYGAGKLWYMQGPFHPDSVPELGYQ 120 AFLNAAVDHLIPSDQYGAGALETGVPEFIDRQMETPYGAGKLWYMQGPFHPDSVPELGYQ Sbjct: 61 AFLNAAVDHLIPSDQYGAGALETGVPEFIDRQMETPYGAGKLWYMQGPFHPDSVPELGYQ 120 Query: 121 LSLVPRDIYRQGIAACNDWCSKNHGKVFAELDKAKQLEVLKMMDGGKISFETVPAKTFFN 180 LSLVPRDIYRQGIAACNDWCSKNHGKVFAELDKAKQLEVLKMMDGGKISFETVPAKTFFN Sbjct: 121 LSLVPRDIYRQGIAACNDWCSKNHGKVFAELDKAKQLEVLKMMDGGKISFETVPAKTFFN 180 Query: 181 FMLGNTKEGYFADPMYGGNQKMGGWKMVGFPGARADFADWVDQYNVKYPYGPVSILGEKG 240 FMLGNTKEGYFADPMYGGNQKMGGWKMVGFPGARADFADWVDQYNVKYPYGPVSILGEKG Sbjct: 181 FMLGNTKEGYFADPMYGGNQKMGGWKMVGFPGARADFADWVDQYNVKYPYGPVSILGEKG 240 >ref|ZP_06688283.1| gluconate 2-dehydrogenase subunit gamma [Achromobacter piechaudii ATCC 43553] gb|EFF74811.1| gluconate 2-dehydrogenase subunit gamma [Achromobacter piechaudii ATCC 43553] Length = 253 Score = 347 bits (890), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 165/240 (68%), Positives = 191/240 (79%), Gaps = 3/240 (1%) Query: 1 MSQDKEPRRRFLRQVLAIVPAASTLGGATTVAVSQAAMADSSEPGKPRAYTPTYFTAAEW 60 M+ D +PRRRFL Q LAIVPA++ GA T + AA + ++ P K +Y PTYFT EW Sbjct: 17 MTDDAKPRRRFL-QALAIVPASTLAVGALTTGCTNAADSKTAAPAK--SYEPTYFTKPEW 73 Query: 61 AFLNAAVDHLIPSDQYGAGALETGVPEFIDRQMETPYGAGKLWYMQGPFHPDSVPELGYQ 120 F+ A+VDHLIP+DQYG GA+E GVPEFIDRQMETP+G GKLWYMQGPFH D PELGYQ Sbjct: 74 DFIVASVDHLIPADQYGPGAIEAGVPEFIDRQMETPFGHGKLWYMQGPFHTDQAPELGYQ 133 Query: 121 LSLVPRDIYRQGIAACNDWCSKNHGKVFAELDKAKQLEVLKMMDGGKISFETVPAKTFFN 180 LS PR++YR GI ACNDWC K HGKV+AELDK Q ++LK + GGKI FETVPA TFF+ Sbjct: 134 LSQNPREVYRHGIQACNDWCVKMHGKVYAELDKPLQEQILKDLQGGKIKFETVPATTFFS 193 Query: 181 FMLGNTKEGYFADPMYGGNQKMGGWKMVGFPGARADFADWVDQYNVKYPYGPVSILGEKG 240 F+L NTKEG+FADP+YGGN+ M GWKMVGFPGARAD+ DW DQ NVKYPYGPVSI GEKG Sbjct: 194 FLLANTKEGFFADPIYGGNKNMVGWKMVGFPGARADYMDWADQPNVKYPYGPVSISGEKG 253 >ref|YP_003979724.1| gluconate 2-dehydrogenase subunit 3 [Achromobacter xylosoxidans A8] gb|ADP17009.1| gluconate 2-dehydrogenase subunit 3 [Achromobacter xylosoxidans A8] Length = 237 Score = 342 bits (876), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 163/240 (67%), Positives = 189/240 (78%), Gaps = 3/240 (1%) Query: 1 MSQDKEPRRRFLRQVLAIVPAASTLGGATTVAVSQAAMADSSEPGKPRAYTPTYFTAAEW 60 M++D +PRRRFL Q LAIVPA++ GA T + + ++ KP Y PTYFT AEW Sbjct: 1 MTEDAKPRRRFL-QALAIVPASTLAVGAMTTGCTNESDGAAARAAKP--YAPTYFTKAEW 57 Query: 61 AFLNAAVDHLIPSDQYGAGALETGVPEFIDRQMETPYGAGKLWYMQGPFHPDSVPELGYQ 120 AF+ AAVDHLIP+D+YG GA+E GVPEFIDRQMETP+G GKLWYMQGPFH D VPELGYQ Sbjct: 58 AFIVAAVDHLIPADEYGPGAIEAGVPEFIDRQMETPFGHGKLWYMQGPFHTDQVPELGYQ 117 Query: 121 LSLVPRDIYRQGIAACNDWCSKNHGKVFAELDKAKQLEVLKMMDGGKISFETVPAKTFFN 180 LS PR++YR GI AC+ WC K HGK +AELDK Q ++LK + GGKI FE+VPA TFF+ Sbjct: 118 LSQNPREVYRHGIEACDAWCVKTHGKAYAELDKPLQEQILKDLQGGKIKFESVPATTFFS 177 Query: 181 FMLGNTKEGYFADPMYGGNQKMGGWKMVGFPGARADFADWVDQYNVKYPYGPVSILGEKG 240 F+L NTKEG+FADPMYGGN+ M GWKMVGFPGARADF DW DQ N KYPYGPVSI GEKG Sbjct: 178 FLLSNTKEGFFADPMYGGNKNMVGWKMVGFPGARADFMDWADQPNAKYPYGPVSISGEKG 237 >gb|EGP43041.1| gluconate 2-dehydrogenase subunit 3 [Achromobacter xylosoxidans AXX-A] Length = 237 Score = 336 bits (862), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 162/240 (67%), Positives = 189/240 (78%), Gaps = 3/240 (1%) Query: 1 MSQDKEPRRRFLRQVLAIVPAASTLGGATTVAVSQAAMADSSEPGKPRAYTPTYFTAAEW 60 M++D +PRRRFL Q LAIVPA++ G + AA + ++ K AY PTYFT EW Sbjct: 1 MTEDAKPRRRFL-QALAIVPASTLAVGVVATGCTDAADSGAARAAK--AYEPTYFTKPEW 57 Query: 61 AFLNAAVDHLIPSDQYGAGALETGVPEFIDRQMETPYGAGKLWYMQGPFHPDSVPELGYQ 120 F+ AAVDHLIP+DQYG GA+E GVPEFIDRQMETPYG GKLWYMQGPFHPD PELGYQ Sbjct: 58 NFIVAAVDHLIPADQYGPGAIEAGVPEFIDRQMETPYGHGKLWYMQGPFHPDVAPELGYQ 117 Query: 121 LSLVPRDIYRQGIAACNDWCSKNHGKVFAELDKAKQLEVLKMMDGGKISFETVPAKTFFN 180 L+ PR++YR GIAAC+ WC K HGK++AELDK Q ++LK + GKI F+ VPAKTFF+ Sbjct: 118 LNQNPREVYRHGIAACDAWCQKTHGKLYAELDKPLQEQILKDLQAGKIEFDAVPAKTFFS 177 Query: 181 FMLGNTKEGYFADPMYGGNQKMGGWKMVGFPGARADFADWVDQYNVKYPYGPVSILGEKG 240 F+LGNTKEG+FADPMYGGN+ M GWKMVGFPGAR D+ DWVDQ N KYPYGPVSI GEKG Sbjct: 178 FLLGNTKEGFFADPMYGGNKNMVGWKMVGFPGARGDYMDWVDQPNAKYPYGPVSISGEKG 237 >gb|EFV87198.1| hypothetical protein HMPREF0005_05629 [Achromobacter xylosoxidans C54] Length = 239 Score = 331 bits (849), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 160/240 (66%), Positives = 187/240 (77%), Gaps = 3/240 (1%) Query: 1 MSQDKEPRRRFLRQVLAIVPAASTLGGATTVAVSQAAMADSSEPGKPRAYTPTYFTAAEW 60 M+QD +PRRRFL Q LAIVPA++ G + AA ++ +AY PTYFT EW Sbjct: 3 MTQDAKPRRRFL-QALAIVPASTLAVGVAATGCTNAADGGAAR--AAKAYEPTYFTKPEW 59 Query: 61 AFLNAAVDHLIPSDQYGAGALETGVPEFIDRQMETPYGAGKLWYMQGPFHPDSVPELGYQ 120 F+ AAVDHLIP+DQYG GA+E GVPEFIDRQMETPYG GKLWYMQGPFHPD PELGYQ Sbjct: 60 DFIVAAVDHLIPADQYGPGAIEAGVPEFIDRQMETPYGHGKLWYMQGPFHPDVAPELGYQ 119 Query: 121 LSLVPRDIYRQGIAACNDWCSKNHGKVFAELDKAKQLEVLKMMDGGKISFETVPAKTFFN 180 L+ PR++YR GI AC+ WC+K HGK +AELDK Q ++LK + GKI F+TVPA+TFF+ Sbjct: 120 LNQNPREVYRHGIEACDAWCTKTHGKRYAELDKPVQEQILKDLQAGKIEFDTVPARTFFS 179 Query: 181 FMLGNTKEGYFADPMYGGNQKMGGWKMVGFPGARADFADWVDQYNVKYPYGPVSILGEKG 240 F+L NTKEG+FADPMYGGN+ M GWKMVGFPGAR D+ DW DQ NVKYPYGPVSI GEKG Sbjct: 180 FLLANTKEGFFADPMYGGNKNMVGWKMVGFPGARGDYMDWADQPNVKYPYGPVSISGEKG 239 >ref|YP_003910246.1| gluconate 2-dehydrogenase (acceptor) [Burkholderia sp. CCGE1003] gb|ADN60955.1| Gluconate 2-dehydrogenase (acceptor) [Burkholderia sp. CCGE1003] Length = 239 Score = 331 bits (848), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 161/242 (66%), Positives = 193/242 (79%), Gaps = 5/242 (2%) Query: 1 MSQDKEPRRRFLRQVLAIVPAASTLGGATTVAVSQAAMADSSEPGKPRA-YTPTYFTAAE 59 MS+ EPRRRFLRQVLAIVPAAS GA A++Q+A ++ A Y PTYFT AE Sbjct: 1 MSKQPEPRRRFLRQVLAIVPAASVASGA---ALTQSACNSAAPSAAAPADYHPTYFTTAE 57 Query: 60 WAFLNAAVDHLIPSDQYGAGALETGVPEFIDRQMETPYGAGKLWYMQGPFHPDSVPELGY 119 W FL+AAVD LIP D++G GAL+ GVPE+IDRQMETPYG GKLWYMQGPFHPD V E+GY Sbjct: 58 WTFLHAAVDRLIPEDEHGPGALKAGVPEYIDRQMETPYGHGKLWYMQGPFHPDVVAEMGY 117 Query: 120 QLSLVPRDIYRQGIAACNDWCSKNH-GKVFAELDKAKQLEVLKMMDGGKISFETVPAKTF 178 Q++L PRD+YR GIAAC+++C KNH GK FA+LD A Q VL M+ GK +FE+VP++TF Sbjct: 118 QINLAPRDVYRHGIAACDEYCKKNHGGKSFAQLDVATQDAVLHDMEHGKPAFESVPSRTF 177 Query: 179 FNFMLGNTKEGYFADPMYGGNQKMGGWKMVGFPGARADFADWVDQYNVKYPYGPVSILGE 238 F+F+LGNTKEG+FADP+YGGN+ M GWKM+GFPGARADF DW+DQ KYPYGPVSI G Sbjct: 178 FSFLLGNTKEGFFADPIYGGNKDMAGWKMLGFPGARADFMDWIDQPGAKYPYGPVSINGR 237 Query: 239 KG 240 +G Sbjct: 238 RG 239 >ref|YP_584650.1| gluconate 2-dehydrogenase subunit 3 [Cupriavidus metallidurans CH34] gb|ABF09381.1| Gluconate 2-dehydrogenase subunit 3 precursor (GADH subunit 3) (GA 2-DH subunit 3) [Cupriavidus metallidurans CH34] Length = 273 Score = 320 bits (821), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 154/246 (62%), Positives = 188/246 (76%), Gaps = 9/246 (3%) Query: 1 MSQDKEPRRRFLRQVLAIVPAASTLGGATTVAVSQAAMADSSEPGKPRA-----YTPTYF 55 MSQ++EPRRRF RQ+LA+VPAAS AT A+SQ+A ++S P A Y P YF Sbjct: 31 MSQEQEPRRRFFRQMLAVVPAASV---ATGAAISQSACSESPGPQSANAGNVGPYKPNYF 87 Query: 56 TAAEWAFLNAAVDHLIPSDQYGAGALETGVPEFIDRQMETPYGAGKLWYMQGPFHPDSVP 115 TA EW F+ AAVD LIP D+ G G L+ GVPE+IDRQM+TPYG GKLWY+QGPFHPD Sbjct: 88 TAGEWKFVQAAVDRLIPEDELGPGGLKAGVPEYIDRQMDTPYGHGKLWYIQGPFHPDVPA 147 Query: 116 ELGYQLSLVPRDIYRQGIAACNDWCSKNH-GKVFAELDKAKQLEVLKMMDGGKISFETVP 174 ELG+Q++L PRDIYR G+ AC+++C K + GK FA+L K Q VL M+ KISF+ VP Sbjct: 148 ELGFQMNLAPRDIYRLGVKACDEYCKKQYGGKAFADLSKEDQESVLGQMEHAKISFDAVP 207 Query: 175 AKTFFNFMLGNTKEGYFADPMYGGNQKMGGWKMVGFPGARADFADWVDQYNVKYPYGPVS 234 A+TFF+++L NTKEG+FADP+YGGN+ M GWKMVGFPGARADFADW+DQ VKYPYGPVS Sbjct: 208 ARTFFSYLLNNTKEGFFADPIYGGNKGMVGWKMVGFPGARADFADWIDQPGVKYPYGPVS 267 Query: 235 ILGEKG 240 I G +G Sbjct: 268 IDGRRG 273 >ref|ZP_02892319.1| Gluconate 2-dehydrogenase (acceptor) [Burkholderia ambifaria IOP40-10] gb|EDT02108.1| Gluconate 2-dehydrogenase (acceptor) [Burkholderia ambifaria IOP40-10] Length = 262 Score = 273 bits (699), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 137/235 (58%), Positives = 162/235 (68%), Gaps = 4/235 (1%) Query: 8 RRRFLRQVLAIVPAASTLGG--ATTVAVSQAAMADSSEPGKPRA-YTPTYFTAAEWAFLN 64 RRRFLR +A+VP AS G ++ + + A A ++ G RA Y PT+F A EWAF+ Sbjct: 28 RRRFLRTSVALVPIASVAGCDLRSSSSATTAGNASTASAGAERAPYKPTFFDAKEWAFVQ 87 Query: 65 AAVDHLIPSDQYGAGALETGVPEFIDRQMETPYGAGKLWYMQGPFHPDSVPELGYQLSLV 124 AAVD LIP+D G GALETGVPEFIDRQMETPY G WYMQGPF VPELGYQL LV Sbjct: 88 AAVDRLIPADAEGPGALETGVPEFIDRQMETPYAHGATWYMQGPFQ-QGVPELGYQLKLV 146 Query: 125 PRDIYRQGIAACNDWCSKNHGKVFAELDKAKQLEVLKMMDGGKISFETVPAKTFFNFMLG 184 PRDIYR GIAA N +C K HGK A+LD + VL ++ G + VPA FF +L Sbjct: 147 PRDIYRLGIAAVNRYCEKAHGKTLADLDAPTRDAVLGALEKGGAQIDDVPATVFFGQLLQ 206 Query: 185 NTKEGYFADPMYGGNQKMGGWKMVGFPGARADFADWVDQYNVKYPYGPVSILGEK 239 NT+EGYF DP++GGN M WKM+GFPGARADF D+V+Q YPYGPVSI GE+ Sbjct: 207 NTREGYFCDPVHGGNHDMAAWKMIGFPGARADFMDFVNQNGKPYPYGPVSINGER 261 >ref|YP_002797331.1| gluconate dehydrogenase small subunit [Azotobacter vinelandii DJ] gb|ACO76356.1| gluconate dehydrogenase small subunit [Azotobacter vinelandii DJ] Length = 236 Score = 272 bits (695), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 132/234 (56%), Positives = 166/234 (70%), Gaps = 8/234 (3%) Query: 8 RRRFLRQVLAIVPAASTLG-GATTVAVSQAAMADSSEPGKPRAYTPTYFTAAEWAFLNAA 66 RR FLR+ LA++PA + G G T A QAA P Y P +F+AAEWAF+NAA Sbjct: 10 RRDFLRKTLAVIPAITVAGYGVATTAFGQAA------PAAQNPYQPRFFSAAEWAFVNAA 63 Query: 67 VDHLIPSDQYGAGALETGVPEFIDRQMETPYGAGKLWYMQGPFHPDSVPELGYQLSLVPR 126 V LIPSD G GA+E GVPEFIDRQ+ET YG G LWYMQ PF D+ P+ G+Q LVPR Sbjct: 64 VARLIPSDANGPGAVEAGVPEFIDRQLETAYGHGNLWYMQAPFAADAAPQFGHQSKLVPR 123 Query: 127 DIYRQGIAACNDWCSKNHGKVFAELDKAKQLEVLKMMDGGKISFETVPAKTFFNFMLGNT 186 DIYR GIAA + WC HGK FAEL+ A Q ++L ++GG+I + +P+ F+ + NT Sbjct: 124 DIYRIGIAALDRWCKGQHGKTFAELEPAAQDDLLHQLEGGRIDLQDLPSVLLFSQLWQNT 183 Query: 187 KEGYFADPMYGGNQKMGGWKMVGFPGARADFADWVDQYNVKYPYGPVSILGEKG 240 +EG+FADP++GGN+ + GWK+VGFPGARADF DWVD+ N KYP+ PVSI GE+G Sbjct: 184 REGFFADPIHGGNRGLAGWKLVGFPGARADFMDWVDR-NEKYPFPPVSISGERG 236 >ref|ZP_02908522.1| Gluconate 2-dehydrogenase (acceptor) [Burkholderia ambifaria MEX-5] gb|EDT40356.1| Gluconate 2-dehydrogenase (acceptor) [Burkholderia ambifaria MEX-5] Length = 245 Score = 271 bits (692), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 136/235 (57%), Positives = 162/235 (68%), Gaps = 4/235 (1%) Query: 8 RRRFLRQVLAIVPAASTLGG--ATTVAVSQAAMADSSEPGKPRA-YTPTYFTAAEWAFLN 64 RRRFLR +A+VP AS G ++ + + A A ++ G RA Y PT+F A EWAF+ Sbjct: 11 RRRFLRTSVALVPIASVAGCDLRSSSSATTAGNASTASAGAERAPYKPTFFDAKEWAFVQ 70 Query: 65 AAVDHLIPSDQYGAGALETGVPEFIDRQMETPYGAGKLWYMQGPFHPDSVPELGYQLSLV 124 AAVD LIP+D G GALETGVPEFIDRQMETPY G WYMQGPF VPELGYQL LV Sbjct: 71 AAVDRLIPADAEGPGALETGVPEFIDRQMETPYAHGATWYMQGPFQ-RGVPELGYQLKLV 129 Query: 125 PRDIYRQGIAACNDWCSKNHGKVFAELDKAKQLEVLKMMDGGKISFETVPAKTFFNFMLG 184 PRDIYR GIAA N +C K HGK FA+LD + VL ++ G + VP+ FF +L Sbjct: 130 PRDIYRLGIAAVNRYCEKAHGKTFADLDAPTRDTVLGALEKGGAQIDDVPSTVFFGQLLQ 189 Query: 185 NTKEGYFADPMYGGNQKMGGWKMVGFPGARADFADWVDQYNVKYPYGPVSILGEK 239 NT+EGYF DP++GGN M WKM+GFPGARADF D+V+Q YPYG VSI GE+ Sbjct: 190 NTREGYFCDPVHGGNHDMAAWKMIGFPGARADFMDFVNQNGKPYPYGAVSINGER 244