BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0095.p (112 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774431.1| Rieske (2Fe-2S) domain-containing protein [H... 225 2e-57 ref|YP_001119474.1| Rieske (2Fe-2S) domain-containing protein [B... 116 1e-24 ref|ZP_05126825.1| rieske (2Fe-2S) domain protein [gamma proteob... 111 4e-23 ref|YP_004313299.1| Rieske (2Fe-2S) iron-sulfur domain [Marinomo... 107 7e-22 ref|ZP_03570621.1| Rieske [2Fe-2S] domain protein [Burkholderia ... 105 2e-21 ref|YP_001341985.1| Rieske (2Fe-2S) domain-containing protein [M... 105 2e-21 ref|YP_003607671.1| Rieske (2Fe-2S) iron-sulfur domain protein [... 105 3e-21 ref|YP_744095.1| Rieske (2Fe-2S) domain-containing protein [Gran... 104 4e-21 ref|YP_001205698.1| hypothetical protein BRADO3698 [Bradyrhizobi... 101 3e-20 ref|YP_004482345.1| Rieske (2Fe-2S) iron-sulfur domain-containin... 100 7e-20 >ref|YP_003774431.1| Rieske (2Fe-2S) domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ62523.1| Rieske (2Fe-2S) domain protein [Herbaspirillum seropedicae SmR1] Length = 112 Score = 225 bits (573), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 111/112 (99%), Positives = 111/112 (99%) Query: 1 MYLCHITQLPENGARGFDTESAGQATIFVLRRGDQVRAWRDSCPHHGTPLPGRRDAYFDG 60 MYLCHITQLPENGARGFDTESAGQATIFVLRRGDQVRAWRDSCPHHGTPLP RRDAYFDG Sbjct: 1 MYLCHITQLPENGARGFDTESAGQATIFVLRRGDQVRAWRDSCPHHGTPLPWRRDAYFDG 60 Query: 61 TGQHLVCAAHGALFDPLTGVCTLGPCQGDTLTAVPLRIDDDGGLHVDAGDPL 112 TGQHLVCAAHGALFDPLTGVCTLGPCQGDTLTAVPLRIDDDGGLHVDAGDPL Sbjct: 61 TGQHLVCAAHGALFDPLTGVCTLGPCQGDTLTAVPLRIDDDGGLHVDAGDPL 112 >ref|YP_001119474.1| Rieske (2Fe-2S) domain-containing protein [Burkholderia vietnamiensis G4] gb|ABO54639.1| Rieske (2Fe-2S) domain protein [Burkholderia vietnamiensis G4] Length = 123 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 55/103 (53%), Positives = 72/103 (69%), Gaps = 1/103 (0%) Query: 1 MYLCHITQLPENGARGFDTESAGQATIFVLRRGDQVRAWRDSCPHHG-TPLPGRRDAYFD 59 + L + LP+ GARGFD + G+ TIFV+RRG+Q+ AWRD+CPH G TP+ R+DAY + Sbjct: 8 VRLASVADLPDPGARGFDPDGTGRDTIFVVRRGEQLHAWRDACPHFGDTPMAWRKDAYLN 67 Query: 60 GTGQHLVCAAHGALFDPLTGVCTLGPCQGDTLTAVPLRIDDDG 102 G +VC AHGA FD +GVC LGPC G L AVP+ + +DG Sbjct: 68 GDATRIVCHAHGAQFDMASGVCLLGPCLGQRLIAVPIEVTEDG 110 >ref|ZP_05126825.1| rieske (2Fe-2S) domain protein [gamma proteobacterium NOR5-3] gb|EED33372.1| rieske (2Fe-2S) domain protein [gamma proteobacterium NOR5-3] Length = 131 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 52/106 (49%), Positives = 72/106 (67%), Gaps = 1/106 (0%) Query: 3 LCHITQLPENGARGFDTESAGQATIFVLRRGDQVRAWRDSCPHHGT-PLPGRRDAYFDGT 61 LCHI +L E+ A+GFD GQA++FV+++ + A+RD CPH+GT PLP +++ Y D Sbjct: 23 LCHIAELRESRAQGFDPFREGQASLFVVKKDTSLYAYRDRCPHYGTTPLPWKKNEYLDKA 82 Query: 62 GQHLVCAAHGALFDPLTGVCTLGPCQGDTLTAVPLRIDDDGGLHVD 107 G +VCAAHGA FD TG+C GPC G +L+A+ L + DG L D Sbjct: 83 GDVIVCAAHGARFDITTGICISGPCLGQSLSAIALHVRRDGQLVAD 128 >ref|YP_004313299.1| Rieske (2Fe-2S) iron-sulfur domain [Marinomonas mediterranea MMB-1] gb|ADZ91463.1| Rieske (2Fe-2S) iron-sulfur domain [Marinomonas mediterranea MMB-1] Length = 125 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 42/106 (39%), Positives = 66/106 (62%), Gaps = 1/106 (0%) Query: 2 YLCHITQLPENGARGFDTESAGQATIFVLRRGDQVRAWRDSCPH-HGTPLPGRRDAYFDG 60 +LCHI ++ + ++GF GQ IF++++ D++ W+++CPH G P+ R+D Y + Sbjct: 10 FLCHIDEIENDSSKGFIENENGQDAIFIVKKNDKLYGWKNACPHVQGAPMAWRKDQYLNT 69 Query: 61 TGQHLVCAAHGALFDPLTGVCTLGPCQGDTLTAVPLRIDDDGGLHV 106 HL C AHGALF+P TG+C GPC G TL V L + +G + + Sbjct: 70 QKTHLTCFAHGALFEPTTGLCIQGPCLGKTLEKVELFVSSEGVISI 115 >ref|ZP_03570621.1| Rieske [2Fe-2S] domain protein [Burkholderia multivorans CGD2M] ref|ZP_03577266.1| Rieske [2Fe-2S] domain protein [Burkholderia multivorans CGD2] gb|EEE08843.1| Rieske [2Fe-2S] domain protein [Burkholderia multivorans CGD2] gb|EEE16528.1| Rieske [2Fe-2S] domain protein [Burkholderia multivorans CGD2M] Length = 119 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 54/104 (51%), Positives = 67/104 (64%), Gaps = 2/104 (1%) Query: 3 LCHITQLPENGARGFDTESAGQATIFVLRRGDQVRAWRDSCPHH--GTPLPGRRDAYFDG 60 L I LP+ GARGFD + G T+FV+R G QVRA+RD+CPH TP+ R+DAY G Sbjct: 11 LASIDDLPDPGARGFDPDGRGHDTLFVVRYGTQVRAYRDACPHFFGETPMAWRKDAYLSG 70 Query: 61 TGQHLVCAAHGALFDPLTGVCTLGPCQGDTLTAVPLRIDDDGGL 104 G +VC AHGA FD +G C LGPC G LT V + + DDG + Sbjct: 71 DGTRIVCHAHGAQFDIASGECVLGPCLGQRLTPVEIDVTDDGAI 114 >ref|YP_001341985.1| Rieske (2Fe-2S) domain-containing protein [Marinomonas sp. MWYL1] gb|ABR72050.1| Rieske (2Fe-2S) domain protein [Marinomonas sp. MWYL1] Length = 120 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 47/109 (43%), Positives = 65/109 (59%), Gaps = 1/109 (0%) Query: 3 LCHITQLPENGARGFDTESAGQATIFVLRRGDQVRAWRDSCPH-HGTPLPGRRDAYFDGT 61 LCHI L E +GF AGQ +FV++ D+ WR++CPH + P+ R+DAY D Sbjct: 10 LCHIDDLKEGDTKGFLENEAGQDLLFVVKFNDEFYGWRNACPHVNNAPMAWRKDAYMDAK 69 Query: 62 GQHLVCAAHGALFDPLTGVCTLGPCQGDTLTAVPLRIDDDGGLHVDAGD 110 QH+ C AHGALF+P TG+C GPC G L VP+ ++ G + + D Sbjct: 70 KQHVACHAHGALFEPDTGLCIQGPCLGKRLKKVPVYVNSMGMVSISLTD 118 >ref|YP_003607671.1| Rieske (2Fe-2S) iron-sulfur domain protein [Burkholderia sp. CCGE1002] gb|ADG18160.1| Rieske (2Fe-2S) iron-sulfur domain protein [Burkholderia sp. CCGE1002] Length = 101 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 52/101 (51%), Positives = 68/101 (67%), Gaps = 3/101 (2%) Query: 9 LPENGARGFDTESAGQATIFVLRRGDQVRAWRDSCPHH-GTPLPGRRDAYFDGTGQHLVC 67 +PE GARGFD + G +F++RRGD +RA+R+SCPH G +P R+ AY DG +H+VC Sbjct: 1 MPETGARGFDLQGRGTDDMFIVRRGDLLRAYRNSCPHWPGASMPWRKHAYLDGKAEHIVC 60 Query: 68 AAHGALFDPLTGVCTLGPCQGDTLTAVPLRIDDDGGLHVDA 108 HGA F G+C LGPCQG L AV LRI++ G +V A Sbjct: 61 HGHGARFRLENGLCVLGPCQGRLLEAVLLRIEE--GRYVSA 99 >ref|YP_744095.1| Rieske (2Fe-2S) domain-containing protein [Granulibacter bethesdensis CGDNIH1] gb|ABI61172.1| rieske (2Fe-2S) domain protein [Granulibacter bethesdensis CGDNIH1] Length = 118 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 50/107 (46%), Positives = 68/107 (63%), Gaps = 1/107 (0%) Query: 2 YLCHITQLPENGARGFDTESAGQATIFVLRRGDQVRAWRDSCPHHGTPLPGRRDAYFDGT 61 +LCH+ L + GA+GF G +F +RRGD VR + ++CPH G PL D + Sbjct: 9 FLCHVQDLSDPGAKGFPPAPGGFFGLFAIRRGDNVRVYVNACPHIGVPLEWAPDRFLSSD 68 Query: 62 GQHLVCAAHGALFDPLTGVCTLGPCQGDTLTAVPLRIDDDGGLHVDA 108 GQH+VC HGALFD L+G C GPC+GD LT VP+ I ++G ++V A Sbjct: 69 GQHIVCGTHGALFDLLSGACQAGPCKGDHLTMVPVTI-ENGAVYVAA 114 >ref|YP_001205698.1| hypothetical protein BRADO3698 [Bradyrhizobium sp. ORS 278] emb|CAL77472.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278] Length = 121 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 48/109 (44%), Positives = 69/109 (63%), Gaps = 1/109 (0%) Query: 1 MYLCHITQLPENGARGFDTESAGQATIFVLRRGDQVRAWRDSCPH-HGTPLPGRRDAYFD 59 + LCH ++ E +RGFD GQ ++FV+R ++ AWR++CPH G P+ RRDAY + Sbjct: 13 VRLCHSDEIGEAQSRGFDPRDEGQDSLFVVRWQGELHAWRNACPHVQGAPMAWRRDAYLN 72 Query: 60 GTGQHLVCAAHGALFDPLTGVCTLGPCQGDTLTAVPLRIDDDGGLHVDA 108 G +VC AHGA F P +G+C GPC+G+ L + L +D DG L V + Sbjct: 73 AAGTRIVCHAHGAEFMPDSGLCVQGPCRGERLHQLELVVDADGELFVKS 121 >ref|YP_004482345.1| Rieske (2Fe-2S) iron-sulfur domain-containing protein [Marinomonas posidonica IVIA-Po-181] gb|AEF55426.1| Rieske (2Fe-2S) iron-sulfur domain protein [Marinomonas posidonica IVIA-Po-181] Length = 121 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 42/101 (41%), Positives = 60/101 (59%), Gaps = 1/101 (0%) Query: 3 LCHITQLPENGARGFDTESAGQATIFVLRRGDQVRAWRDSCPH-HGTPLPGRRDAYFDGT 61 LCH+ L + +GF GQ IF++++ ++ W+++CPH G P+ R+D Y + Sbjct: 7 LCHVDDLENDSTKGFLENENGQDAIFIVKKNGELYGWKNACPHVQGAPMAWRKDQYLNTQ 66 Query: 62 GQHLVCAAHGALFDPLTGVCTLGPCQGDTLTAVPLRIDDDG 102 HL C AHGALFDP TG+C GPC G TL V L + +G Sbjct: 67 KTHLTCFAHGALFDPTTGLCIQGPCLGKTLEKVELFVSSEG 107