BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0076.p (405 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774420.1| porin signal peptide protein [Herbaspirillum... 717 0.0 ref|YP_004754681.1| outer membrane protein [Collimonas fungivora... 293 5e-77 ref|YP_004751955.1| outer membrane protein [Collimonas fungivora... 276 4e-72 ref|YP_003777672.1| outer membrane porin [Herbaspirillum seroped... 270 4e-70 ref|YP_003773619.1| outer membrane protein (porin) signal peptid... 267 2e-69 ref|YP_004754680.1| outer membrane protein [Collimonas fungivora... 230 4e-58 gb|EGC99067.1| outer membrane porin [Burkholderia sp. TJI49] 214 3e-53 ref|YP_772345.1| porin [Burkholderia ambifaria AMMD] >gi|1152804... 213 4e-53 ref|YP_001807190.1| porin [Burkholderia ambifaria MC40-6] >gi|17... 213 5e-53 ref|ZP_03575533.1| outer membrane porin [Burkholderia multivoran... 212 9e-53 >ref|YP_003774420.1| porin signal peptide protein [Herbaspirillum seropedicae SmR1] gb|ADJ62512.1| porin signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 405 Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/405 (87%), Positives = 375/405 (92%) Query: 1 MKKSLLALAVLGAFAGAAHAQSSSITIYGAIDASLTYTNKIATDGKKTGSLTAVESGLVK 60 MKKSLLALAVLGAFAGAAHAQSSSITIYGAIDASLTYTNKIATDGK TGSLTAVESGLVK Sbjct: 1 MKKSLLALAVLGAFAGAAHAQSSSITIYGAIDASLTYTNKIATDGKNTGSLTAVESGLVK 60 Query: 61 GSRLGVKGSEDLGGGLKAVFTLENGFNVDTGKAGQGELMWGRQTTVGLSGNFGTVLIGRQ 120 GSRLG+KGSEDLGGGLKAVFTLENGFNVDTG+AGQG+LMWGRQTTVGLSGNFGTVL+GRQ Sbjct: 61 GSRLGIKGSEDLGGGLKAVFTLENGFNVDTGEAGQGKLMWGRQTTVGLSGNFGTVLVGRQ 120 Query: 121 NDPLNDIGGIASAGGFGVPGSVHSKGLDRTDGQRVNNSIRYNSPNFNGLSFSGIYGFGEQ 180 NDPLNDIGGIASAGGFGVPG+VHSKGLDRTDGQR+NNSIRYNSPNFNGLSFSGIYGFGEQ Sbjct: 121 NDPLNDIGGIASAGGFGVPGTVHSKGLDRTDGQRLNNSIRYNSPNFNGLSFSGIYGFGEQ 180 Query: 181 TGKAGGGRSFGLGGQYVNGPLSLGLGYFQSKMGGAKGVPSDVNGDAACNGADNTNKDGDT 240 G+A GGRS GLG QYVNGPLSLGLGYFQSKMGG SDVN AACNGA + GDT Sbjct: 181 VGRAVGGRSIGLGSQYVNGPLSLGLGYFQSKMGGGSDGSSDVNAKAACNGAGEKDHAGDT 240 Query: 241 CLKTWTLAGAYQFGPAKVYGAFSHMKLPLAKQYSKVPKFNKFAAMYNPDTGSGYKPTDSS 300 CLKTWTLA AYQFGPAKVYGAFSH++LPLAK ++KV K N F AMY+ TG+GY P+D++ Sbjct: 241 CLKTWTLAAAYQFGPAKVYGAFSHVRLPLAKLHTKVRKDNNFGAMYDAKTGTGYNPSDAT 300 Query: 301 AFSIGGTNHQSSQTFDIGASYQLMPSLALMSSVQHTRARFVGASSGRLLQFNLGAKYDLS 360 AFSIGG NH+SSQTFDIG SYQLMPSL LMS+VQHTRA+FVGA+SGRLLQ NLGAKYDLS Sbjct: 301 AFSIGGANHKSSQTFDIGMSYQLMPSLTLMSAVQHTRAKFVGAASGRLLQLNLGAKYDLS 360 Query: 361 KRTSAYALVRNLRSSDMYNVGLSKDQEPGIDRSQTAISTGLIHTF 405 KRTSAYALVRNLRSSDMYNVGLSKDQEPGIDRSQTAISTGLIHTF Sbjct: 361 KRTSAYALVRNLRSSDMYNVGLSKDQEPGIDRSQTAISTGLIHTF 405 >ref|YP_004754681.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AAT42406.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AEK63858.1| Outer membrane protein [Collimonas fungivorans Ter331] Length = 390 Score = 293 bits (749), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 187/413 (45%), Positives = 247/413 (59%), Gaps = 31/413 (7%) Query: 1 MKKSLLALAVLGAFAGAAHAQSSSITIYGAIDASLTYTNKIATDGKKTGSLTAVESGLVK 60 MKKSL+ALAVLGA A SS+TIYG +D + YT+K T TGS ++ SG+++ Sbjct: 1 MKKSLIALAVLGA-IAGAAQAQSSVTIYGIVDTGIVYTSKALTSTGGTGSKFSINSGIIQ 59 Query: 61 GSRLGVKGSEDLGGGLKAVFTLENGFNVDTGKAGQGE----LMWGRQTTVGLSGNFGTVL 116 GSRLG KG EDLGGGLKA+F LE GFN DTG QG+ ++ R++ VGL GNFG+VL Sbjct: 60 GSRLGFKGVEDLGGGLKALFQLEAGFNNDTGGL-QGDKGTTTLFRRKSVVGLGGNFGSVL 118 Query: 117 IGRQNDPLNDIGGIASAGGF-GVPGSVHSKGLDRTDGQRVNNSIRYNSPNFNGLSFSGIY 175 +GRQ D L+D+ S F GV GSV LDR +G R NNSIRYN+P+ +G + S IY Sbjct: 119 LGRQTDILDDVSQWTSVQDFGGVTGSV-GHNLDRLEGTRTNNSIRYNTPDVSGFTGSLIY 177 Query: 176 GFGEQTGKAGGGRSFGLGGQYVNGPLSLGLGYFQSKMGGAKGVPSD-VNGDAACNGADNT 234 GFGE G+ G+SFG G QY NGPL L Y+QSK+G + +NG N + Sbjct: 178 GFGETAGQTSAGQSFGAGAQYANGPLGLFAAYYQSKLGSPTASDTSLINGSQVAN---FS 234 Query: 235 NKDGDTCLKTWTLAGAYQFGPAKVYGAFSHMKLPLAKQYSKVPKFNKFAAMYNPDTGSGY 294 K GDT LKT+++ +YQ GPA++YG +S K PLA N T Sbjct: 235 GKSGDTALKTFSIGASYQAGPARLYGNWSRTKQPLATS-------------SNSATTGIL 281 Query: 295 KPTDSSAFSIGGTNHQSSQTFDIGASYQLMPSLALMSSVQHTRARF--VGASSGRLLQFN 352 +P +F++G N+ + F++G +Y + L L++SVQ+ + F GA G+L QFN Sbjct: 282 QP---GSFTVGSFNNTKADIFELGVNYAVTAPLHLLASVQYNKLTFADAGADKGKLTQFN 338 Query: 353 LGAKYDLSKRTSAYALVRNLRSSDMYNVGLSKDQEPGIDRSQTAISTGLIHTF 405 LG Y LSKRT YA V NLR+ D N G+ D G +QTA++ G+ H F Sbjct: 339 LGTDYFLSKRTDLYAFVSNLRAKDAVNPGVYGD-SLGDTGNQTAVAVGIRHKF 390 >ref|YP_004751955.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AEK61132.1| Outer membrane protein [Collimonas fungivorans Ter331] Length = 370 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 178/415 (42%), Positives = 229/415 (55%), Gaps = 55/415 (13%) Query: 1 MKKSLLALAVLGAFAGAAHAQSSSITIYGAIDASLTYTNKIATDGKKTGSLTAVESGLVK 60 MKK++ ALA LG A AQ++ +TIYG IDA LTYT+K+ G K S +++SG + Sbjct: 1 MKKTVFALAALGLIGANAQAQTN-VTIYGVIDAGLTYTSKV---GPKNDSRISLDSGDMA 56 Query: 61 GSRLGVKGSEDLGGGLKAVFTLENGFNVDTGKAGQGELMWGRQTTVGLSGNFGTVLIGRQ 120 SR+G +G+EDLGGGLKA+F LENGFN D G ++ R+ VGLSG+FGTV +GRQ Sbjct: 57 TSRIGFRGTEDLGGGLKAIFQLENGFNADDGSLATASTLFDRKAVVGLSGSFGTVTLGRQ 116 Query: 121 NDPLNDIGG-IASAGGFGVPG--SVHSKGLDRTDGQRVNNSIRYNSPNFNGLSFSGIYGF 177 D L+DIG S FG G + H LDR G R NNSIRY+S N +G + S YGF Sbjct: 117 TDYLDDIGSKYTSVQTFGSNGIKAGHFNNLDRVGGVRANNSIRYDSANLSGFTGSLFYGF 176 Query: 178 GEQTGKAGGGRSFGLGGQYVNGPLSLGLGYFQSKMGGAKGVPSDVNGDAACNGADNTNKD 237 GE G+ G+SFGL G Y NGP +GLGYFQ+K+ A +PS K Sbjct: 177 GEVAGQTSAGQSFGLAGNYANGPFGIGLGYFQTKL-AADALPS---------------KA 220 Query: 238 GDTCLKTWTLAGAYQFGPAKVYGAFSHMKLPLAKQYSKVPKFNKFAAMYNPDTGSGYKPT 297 GDT LKT+TL +YQ GPAK+YGA+S K PLA + N Sbjct: 221 GDTDLKTFTLGASYQAGPAKIYGAWSQTKRPLAAALAATGLVNI---------------- 264 Query: 298 DSSAFSIGGTNHQSSQTFDIGASYQLMPSLALMSSVQHTRA----RFVGASSGRLLQFNL 353 T + FD+G Y L +L L++SV + RA + G++ G+ Q NL Sbjct: 265 ---------TTATKANIFDLGVDYSLSGNLHLLASVIYDRADLSRKTAGSTKGKTTQLNL 315 Query: 354 GAKYDLSKRTSAYALVRNLRSSDMYNVGL---SKDQEPGIDRSQTAISTGLIHTF 405 G Y LSKRT YAL N R++D+ N G+ + P D SQ GL H F Sbjct: 316 GVDYYLSKRTDLYALYTNQRANDVNNPGVINAAYSSAPADDTSQNVFRVGLRHKF 370 >ref|YP_003777672.1| outer membrane porin [Herbaspirillum seropedicae SmR1] emb|CAP19662.1| porin [Herbaspirillum seropedicae] gb|ADJ65764.1| outer membrane (porin) protein [Herbaspirillum seropedicae SmR1] Length = 387 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 178/417 (42%), Positives = 238/417 (57%), Gaps = 42/417 (10%) Query: 1 MKKSLLALAVLGAFAGAAHAQSSSITIYGAIDASLTYTNKI----ATDGKKTGSLTAVES 56 MKKSLLALAVLGA A SS+TIYG +D + Y++K+ A TGS + S Sbjct: 1 MKKSLLALAVLGA-FAGAAQAQSSVTIYGIVDTGIAYSSKVGYTDANGNAATGSKFGINS 59 Query: 57 GLVKGSRLGVKGSEDLGGGLKAVFTLENGFNVDTG-----KAGQGELMWGRQTTVGLSGN 111 G+++GSR+G KG EDLGGGL AVF LE GF D G A ++ R++ VGLSG Sbjct: 60 GVIQGSRIGFKGVEDLGGGLSAVFNLETGFTSDDGGLQGSDAVTSSNLFRRKSVVGLSGG 119 Query: 112 FGTVLIGRQNDPLNDIGGIASAGGFGVPGSVHSKG--LDRTDGQRVNNSIRYNSPNFNGL 169 FGTVL+GRQ D + I + FG G V + G L+R G R NNS+ Y + N +G Sbjct: 120 FGTVLLGRQTDFADTISAYTAVADFG--GVVANSGSSLNRLQGTRTNNSVSYTTANLSGF 177 Query: 170 SFSGIYGFGEQTGKAGGGRSFGLGGQYVNGPLSLGLGYFQSKMGGAKGVPSDVNGDAACN 229 + + IYGFGEQ GK G+++G+GG+Y NGPL LG+ Y+QSK G S + A N Sbjct: 178 TGNLIYGFGEQAGKTSAGQAYGIGGKYDNGPLGLGINYYQSKAGSTPSDTSLIPAAGATN 237 Query: 230 GADNTNKDGDTCLKTWTLAGAYQFGPAKVYGAFSHMKLPLAKQYSKVPKFNKFAAMYNPD 289 G+T LK+ + +YQFGPA+VY +S +K L Sbjct: 238 ANTALGVAGNTALKSLNVVASYQFGPARVYANYSRVKQDLKG------------------ 279 Query: 290 TGSGYKPTDSSAFSIGGTNHQSSQTFDIGASYQLMPSLALMSSVQHTRARFVGASS-GRL 348 PT ++A N Q + T++IG +Y L PSL L+++V H+RA F G ++ G+L Sbjct: 280 -----TPTVATATL---ANAQKADTYEIGTAYSLSPSLKLLAAVDHSRATFNGVNTKGKL 331 Query: 349 LQFNLGAKYDLSKRTSAYALVRNLRSSDMYNVGLSKDQEPGIDRSQTAISTGLIHTF 405 Q +LGA Y LSKRT YA V N+R+SD+ N G++ G D SQTAI TG+ H F Sbjct: 332 TQISLGADYFLSKRTDLYAFVSNMRASDIQNPGVTGG-ATGSDASQTAIITGIRHKF 387 >ref|YP_003773619.1| outer membrane protein (porin) signal peptide protein [Herbaspirillum seropedicae SmR1] gb|ADJ61711.1| outer membrane protein (porin) signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 390 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 176/411 (42%), Positives = 243/411 (59%), Gaps = 27/411 (6%) Query: 1 MKKSLLALAVLGAFAGAAHAQSSSITIYGAIDASLTYTNKIATDGKKTGSLTAVESGLVK 60 MKKSLLALAVLGA A SS+TIYG +D + Y +K+AT TGS ++ SG+++ Sbjct: 1 MKKSLLALAVLGA-FAGAAQAQSSVTIYGIVDTGVVYQSKVATPTGGTGSKFSLNSGVIQ 59 Query: 61 GSRLGVKGSEDLGGGLKAVFTLENGFNVDTG---KAGQGELMWGRQTTVGLSGNFGTVLI 117 GSR+G KG+EDLGGGL AVF LE GF+ DTG + ++ R++ VGL+GNFG+VL+ Sbjct: 60 GSRIGFKGTEDLGGGLSAVFNLEAGFSNDTGALDDSKTSNTLFRRKSVVGLAGNFGSVLL 119 Query: 118 GRQNDPLNDIGGIASAGGFGVPGSVHSKGLDRTDGQRVNNSIRYNSPNFNGLSFSGIYGF 177 GRQ D + I S FG LDR +G R NNSI Y + N NG + + +YGF Sbjct: 120 GRQTDFADTISSYTSVQDFGGWTGAAGHNLDRLEGTRTNNSISYTTANLNGFTGNLMYGF 179 Query: 178 GEQTGKAGGGRSFGLGGQYVNGPLSLGLGYFQSKMGGAKGVPSDVNGDAA--CNGADNTN 235 GE G+ G++FG+GG+Y NGPL LG+ Y+QSK G P+D + AA N N Sbjct: 180 GETAGQTSAGQAFGVGGKYDNGPLGLGINYYQSKAG---STPADASLLAATGTNQFTNGT 236 Query: 236 KDGDTCLKTWTLAGAYQFGPAKVYGAFSHMKLPLAKQYSKVPKFNKFAAMYNPDTGSGYK 295 +G T K +A +YQFGPA+VYG +S +K L Q N AA G G Sbjct: 237 NNGSTAQKVLNVAASYQFGPARVYGNWSRVKQDLNTQA------NLTAA------GVGSL 284 Query: 296 PTDSSAFSIGGTNHQSSQTFDIGASYQLMPSLALMSSVQHTRARFVGAS-SGRLLQFNLG 354 T S+ ++ +N + ++IG +Y L PSL L+++V HTRA+F G S +L Q +LG Sbjct: 285 ATISNR-TLAASNK--ADIYEIGTAYSLSPSLKLLAAVDHTRAQFDGVSGKAKLTQVSLG 341 Query: 355 AKYDLSKRTSAYALVRNLRSSDMYNVGLSKDQEPGIDRSQTAISTGLIHTF 405 Y LSKRT YA + +++D+ N G++ G D +Q A++ G+ H F Sbjct: 342 TDYWLSKRTDLYAFLAYSKATDLNNPGVA--DSSGTDGNQGAVAVGIRHKF 390 >ref|YP_004754680.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AAT42405.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AEK63857.1| Outer membrane protein [Collimonas fungivorans Ter331] Length = 371 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 168/420 (40%), Positives = 221/420 (52%), Gaps = 64/420 (15%) Query: 1 MKKSLLALAVLGAFAGAAHAQSSSITIYGAIDASLTYTNKIAT-----DGKKTGSLTAVE 55 MKKSL+AL VLGA A SS+TIYG +DA +TY+N DG+ GS V Sbjct: 1 MKKSLIALTVLGA-IAGAAQAQSSVTIYGTVDAGVTYSNNNVPANNANDGRLGGSKFGVG 59 Query: 56 SGLVKGSRLGVKGSEDLGGGLKAVFTLENGFNVDTGKAGQGELMWGRQTTVGLSGNFGTV 115 SG + SR+G KG EDLGGGLKA+F LE GFN DTG Q + ++ R++ VGL GNFG+V Sbjct: 60 SGNIDTSRIGFKGVEDLGGGLKALFQLEAGFNTDTGGFEQDKSLFNRKSVVGLGGNFGSV 119 Query: 116 LIGRQNDPLNDIGG-IASAGGFG-VPGSVHSKGLDRTDGQRVNNSIRYNSPNFNGLSFSG 173 L+GRQ+D L+D G S FG GS H DR +G R NSIRYNSP+F+G++ S Sbjct: 120 LLGRQSDVLDDYGHQYTSVKDFGNFVGSPHVG--DRLEGSRTQNSIRYNSPSFSGVTASA 177 Query: 174 IYGFGEQTGKAGGGRSFGLGGQYVNGPLSLGLGYFQSKMGGAKGVPSDVNGDAACNGADN 233 IYGFGE+ G G++FG G Y NGPL LGY+QSK G + D A N Sbjct: 178 IYGFGEEAGANSNGQAFGGGVAYDNGPLGAYLGYYQSKAG-------KNSADTAPLFQLN 230 Query: 234 TNKDGDTCLKTWTLAGAYQFGPAKVYGAFSHMKLPLAKQYSKVPKFNKFAAMYNPDTGSG 293 +GDT KT++L +YQ GPA++YG +S + +P +QY + Sbjct: 231 PVAEGDTMNKTFSLGASYQAGPARLYGNWSRINVP--EQYKQ------------------ 270 Query: 294 YKPTDSSAFSIGGTNHQSSQTFDIGASYQLMPSLALMSSVQHTRARFVGASSG-----RL 348 F++G Y L L L++SVQHT+ G + G ++ Sbjct: 271 -------------------NIFELGTDYALTAPLHLLASVQHTQYSLDGNTEGNSSKPQV 311 Query: 349 LQFNLGAKYDLSKRTSAYALVRNLRSSDMYNVG---LSKDQEPGIDRSQTAISTGLIHTF 405 Q NLG Y LSKRT Y L + + VG Q +Q A++ G+ H F Sbjct: 312 TQVNLGVDYYLSKRTDLYTLASYAKGKNGAPVGDYSAPAVQNDAGKSNQAAVAIGIRHKF 371 >gb|EGC99067.1| outer membrane porin [Burkholderia sp. TJI49] Length = 385 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 154/384 (40%), Positives = 204/384 (53%), Gaps = 61/384 (15%) Query: 1 MKKSLLALAVLGAFAGAAHAQSSSITIYGAIDASLTYTNKIATDGKKTGSLTAVESGLVK 60 MKKSLLAL LGAFAGAAHAQSS +T+YG ID L + N + GK L ++ SG+++ Sbjct: 1 MKKSLLALVALGAFAGAAHAQSS-VTLYGIIDEGLLFNNN--SGGKH---LYSMASGVMQ 54 Query: 61 GSRLGVKGSEDLGGGLKAVFTLENGFNVDTGKAGQGELMWGRQTTVGLSGNFGTVLIGRQ 120 GSR G++G+EDLGGGLKA+FTLENGF+V++GK GQG LM+GRQ VGLS NFGTV +GRQ Sbjct: 55 GSRFGLRGTEDLGGGLKAIFTLENGFDVNSGKLGQGSLMFGRQAYVGLSSNFGTVTLGRQ 114 Query: 121 NDPLNDIGGIASAGG-FGVPGSVHSKGLDR-TDGQRVNNSIRYNSPNFNGLSFSGIYGFG 178 D + D G AG +G + H LD + RVNN+I+Y SP + G SF G+Y G Sbjct: 115 YDSVVDFVGPLEAGDQWGGYIAAHPGDLDNFNNAYRVNNAIKYTSPTYAGFSFGGLYSLG 174 Query: 179 EQTGKAGGGRSFGLGGQYVNGPLSLGLGYFQSKMGGAKG-------------VPSDVNGD 225 G+ + + LG Y NGPL LG+GY ++ G G V S V G Sbjct: 175 GIAGQFARNQVWSLGAGYNNGPLVLGVGYLNARTPGNAGGMFNNGSTAAAVPVTSPVYGA 234 Query: 226 AACNGADNTNKDGDTCLKTWTLAGAYQFGPAKVYGAFSHMKLPLAKQYSKVPKFNKFAAM 285 A N + GAY FG A + +S+ K K +S P N+ A Sbjct: 235 YANNA---------NTYQVIGAGGAYTFGAATIGATYSNTKF---KGFSVGPYVNQTATF 282 Query: 286 YNPDTGSGYKPTDSSAFSIGGTNHQSSQTFDIGASYQLMPSLALMSSVQHTR-ARFVGAS 344 N +I YQL P+L L ++ +T+ ++ G S Sbjct: 283 NNG---------------------------EINFKYQLTPALILGAAYDYTQGSKIDGNS 315 Query: 345 SGRLLQFNLGAKYDLSKRTSAYAL 368 + + Q +LG Y LSKRT Y + Sbjct: 316 AAKYHQGSLGVDYFLSKRTDVYVI 339 >ref|YP_772345.1| porin [Burkholderia ambifaria AMMD] gb|ABI86011.1| porin, Gram-negative type [Burkholderia ambifaria AMMD] Length = 385 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 155/421 (36%), Positives = 214/421 (50%), Gaps = 52/421 (12%) Query: 1 MKKSLLALAVLGAFAGAAHAQSSSITIYGAIDASLTYTNKIATDGKKTGSLTAVESGLVK 60 MKKSLLAL LGAFAGAAHAQSS +T+YG ID + N K G L + SG+++ Sbjct: 1 MKKSLLALVALGAFAGAAHAQSS-VTLYGIIDEGFIFNNN-----AKGGHLYGLSSGVMQ 54 Query: 61 GSRLGVKGSEDLGGGLKAVFTLENGFNVDTGKAGQGELMWGRQTTVGLSGNFGTVLIGRQ 120 GSR G++G+EDLGGGLKAVF LENGF+V++G+ GQG LM+GRQ VGLS FGTV +GRQ Sbjct: 55 GSRFGLRGTEDLGGGLKAVFVLENGFDVNSGRLGQGGLMFGRQAYVGLSSQFGTVTLGRQ 114 Query: 121 NDPLNDIGGIASAGG-FGVPGSVHSKGLDR-TDGQRVNNSIRYNSPNFNGLSFSGIYGFG 178 D + D G AG +G + H LD + RVNN+++Y SP + G SF G+Y FG Sbjct: 115 YDSVVDFVGPLEAGDQWGGYIAAHPGDLDNFNNAYRVNNAVKYTSPTYGGFSFGGMYSFG 174 Query: 179 EQTGKAGGGRSFGLGGQYVNGPLSLGLGYFQSK----MGGAKGVPSDVNGDAACNGADNT 234 Q G+ + + LG Y NGPL LG+GY ++ GG + A + Sbjct: 175 GQAGQFSRNQVWSLGAGYNNGPLVLGVGYLNARTPANFGGMFNTGASAATTAVSSPVYGA 234 Query: 235 NKDGDTCLKTWTLAGAYQFGPAKVYGAFSHMKLPLAKQYSKVPKFNKFAAMYNPDTGSGY 294 + + GAY FG A + +S+ K K +S P N+ A N Sbjct: 235 YANSANTYQVIGAGGAYTFGAATIGATYSNTKF---KGFSVGPFVNQTATFNNG------ 285 Query: 295 KPTDSSAFSIGGTNHQSSQTFDIGASYQLMPSLALMSSVQHTR-ARFVGASSGRLLQFNL 353 +I YQL P+L + ++ +T+ ++ G S+ + Q +L Sbjct: 286 ---------------------EINFKYQLTPALIVGAAYDYTQGSKIDGNSAAKYHQGSL 324 Query: 354 GAKYDLSKRTSAYAL-VRNLRSSDMYNVGLSKDQ--------EPGIDRSQTAISTGLIHT 404 G Y LSKRT Y + V S + + + Q +P +Q A G+ H Sbjct: 325 GVDYFLSKRTDVYVIGVYQHASGNALDAAGNVVQAHASINGLDPSTTSNQVAARVGIRHK 384 Query: 405 F 405 F Sbjct: 385 F 385 >ref|YP_001807190.1| porin [Burkholderia ambifaria MC40-6] gb|ACB62974.1| porin Gram-negative type [Burkholderia ambifaria MC40-6] Length = 385 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 154/421 (36%), Positives = 214/421 (50%), Gaps = 52/421 (12%) Query: 1 MKKSLLALAVLGAFAGAAHAQSSSITIYGAIDASLTYTNKIATDGKKTGSLTAVESGLVK 60 MKKSLLAL LGAFAGAAHAQSS +T+YG ID + N K G L + SG+++ Sbjct: 1 MKKSLLALVALGAFAGAAHAQSS-VTLYGIIDEGFIFNNN-----AKGGHLYGLSSGVMQ 54 Query: 61 GSRLGVKGSEDLGGGLKAVFTLENGFNVDTGKAGQGELMWGRQTTVGLSGNFGTVLIGRQ 120 GSR G++G+EDLGGGLKA+F LENGF+V++G+ GQG LM+GRQ VGLS FGTV +GRQ Sbjct: 55 GSRFGLRGTEDLGGGLKAIFVLENGFDVNSGRLGQGGLMFGRQAYVGLSSQFGTVTLGRQ 114 Query: 121 NDPLNDIGGIASAGG-FGVPGSVHSKGLDR-TDGQRVNNSIRYNSPNFNGLSFSGIYGFG 178 D + D G AG +G + H LD + RVNN+++Y SP + G SF G+Y FG Sbjct: 115 YDSVVDFVGPLEAGDQWGGYIAAHPGDLDNFNNAYRVNNAVKYTSPTYGGFSFGGMYSFG 174 Query: 179 EQTGKAGGGRSFGLGGQYVNGPLSLGLGYFQSK----MGGAKGVPSDVNGDAACNGADNT 234 Q G+ + + LG Y NGPL LG+GY ++ GG + A + Sbjct: 175 GQAGQFSRNQVWSLGAGYNNGPLVLGVGYLNARTPANFGGMFNTGASAATTAVSSPVYGA 234 Query: 235 NKDGDTCLKTWTLAGAYQFGPAKVYGAFSHMKLPLAKQYSKVPKFNKFAAMYNPDTGSGY 294 + + GAY FG A + +S+ K K +S P N+ A N Sbjct: 235 YANSANTYQVIGAGGAYTFGAATIGATYSNTKF---KGFSVGPFVNQTATFNNG------ 285 Query: 295 KPTDSSAFSIGGTNHQSSQTFDIGASYQLMPSLALMSSVQHTR-ARFVGASSGRLLQFNL 353 +I YQL P+L + ++ +T+ ++ G S+ + Q +L Sbjct: 286 ---------------------EINFKYQLTPALIVGAAYDYTQGSKIDGNSAAKYHQGSL 324 Query: 354 GAKYDLSKRTSAYAL-VRNLRSSDMYNVGLSKDQ--------EPGIDRSQTAISTGLIHT 404 G Y LSKRT Y + V S + + + Q +P +Q A G+ H Sbjct: 325 GVDYFLSKRTDVYVIGVYQHASGNALDAAGNVVQAHASINGLDPSTTSNQVAARVGIRHK 384 Query: 405 F 405 F Sbjct: 385 F 385 >ref|ZP_03575533.1| outer membrane porin [Burkholderia multivorans CGD2M] ref|ZP_03581180.1| outer membrane porin [Burkholderia multivorans CGD2] gb|EEE04520.1| outer membrane porin [Burkholderia multivorans CGD2] gb|EEE10015.1| outer membrane porin [Burkholderia multivorans CGD2M] Length = 387 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 150/380 (39%), Positives = 207/380 (54%), Gaps = 54/380 (14%) Query: 1 MKKSLLALAVLGAFAGAAHAQSSSITIYGAIDASLTYTNKIATDGKKTGSLTAVESGLVK 60 MKKSLLAL LGAFAGAAHAQSS +T+YG ID + N K L + SG+++ Sbjct: 1 MKKSLLALVALGAFAGAAHAQSS-VTLYGIIDEGFIFNNN-----AKGQHLYGLSSGVMQ 54 Query: 61 GSRLGVKGSEDLGGGLKAVFTLENGFNVDTGKAGQGELMWGRQTTVGLSGNFGTVLIGRQ 120 GSR G++G+EDLGGGLKA+FTLENGF+V++G+ GQG LM+GRQ VGLS +GTV +GRQ Sbjct: 55 GSRFGLRGTEDLGGGLKAIFTLENGFDVNSGRLGQGGLMFGRQAYVGLSSQYGTVTLGRQ 114 Query: 121 NDPLNDIGGIASAGG-FGVPGSVHSKGLDR-TDGQRVNNSIRYNSPNFNGLSFSGIYGFG 178 D + D G AG +G + H LD + RVNN+++Y SP + G SF G+Y FG Sbjct: 115 YDSVVDFVGPLEAGDQWGGYIAAHPGDLDNFNNAYRVNNAVKYTSPTYGGFSFGGLYSFG 174 Query: 179 EQTGKAGGGRSFGLGGQYVNGPLSLGLGYFQSKMGGAKGVPSDV-----NGDAACNGADN 233 Q G+ + + LG Y NGPL LG+GY ++ PS+ NG A N + Sbjct: 175 GQAGQFSKNQVWSLGAGYNNGPLVLGVGYLNAR------TPSNFGGMFNNGSATSNSVLS 228 Query: 234 TNKDG----DTCLKTWTLAGAYQFGPAKVYGAFSHMKLPLAKQYSKVPKFNKFAAMYNPD 289 + G + GAY FG A + +S++K FN + P Sbjct: 229 SPIYGAYANANTYQVIGAGGAYTFGAATIGATYSNVKF---------KNFN-----FGPY 274 Query: 290 TGSGYKPTDSSAFSIGGTNHQSSQTFDIGASYQLMPSLALMSSVQHTR-ARFVGASSGRL 348 TG ++ F+ G +I YQL P+L L ++ +T+ ++ G S+ + Sbjct: 275 TG------QTATFNNG----------EINFKYQLTPALILGAAYDYTQGSKIDGNSAAKY 318 Query: 349 LQFNLGAKYDLSKRTSAYAL 368 Q +LG Y LSKRT Y + Sbjct: 319 HQGSLGVDYFLSKRTDVYVI 338