BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0053.p (445 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776746.1| C4-dicarboxylate transport response regulato... 889 0.0 ref|YP_004752901.1| nitrogen regulation protein NR(I) [Collimona... 639 0.0 ref|ZP_08272677.1| putative response regulator of the c4-dicarbo... 609 e-172 ref|YP_003450638.1| hypothetical protein AZL_a05630 [Azospirillu... 515 e-144 gb|EGW61907.1| two component, sigma54 specific, transcriptional ... 506 e-141 ref|YP_001795631.1| c4-dicarboxylate transport transcriptional r... 495 e-138 ref|YP_004684157.1| C4-dicarboxylatetransporttranscriptional reg... 494 e-137 ref|YP_003603864.1| two component, sigma54 specific, transcripti... 493 e-137 ref|ZP_03269977.1| two component, sigma54 specific, transcriptio... 493 e-137 ref|YP_724816.1| response regulator of C4-dicarboxylate transpor... 493 e-137 >ref|YP_003776746.1| C4-dicarboxylate transport response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64838.1| C4-dicarboxylate transport response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 445 Score = 889 bits (2298), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/445 (99%), Positives = 444/445 (99%) Query: 1 MDKPGGAASALLIEDEQTVRRATAQALELGGFAVTACASAEEALPLITRDFAGVVVSDVR 60 MDKPGGAASALLIEDEQTVRRATAQALELGGFAVTAC SAEEALPLITRDFAGVVVSDVR Sbjct: 1 MDKPGGAASALLIEDEQTVRRATAQALELGGFAVTACGSAEEALPLITRDFAGVVVSDVR 60 Query: 61 LPGLSGLDVLARVVAIDHDLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFSSDTLLEIAL 120 LPGLSGLDVLARVVAIDHDLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFSSDTLLEIAL Sbjct: 61 LPGLSGLDVLARVVAIDHDLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFSSDTLLEIAL 120 Query: 121 RAQEKRNLVLENRRLREAWAHDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGT 180 RAQEKRNLVLENRRLREAWAHDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGT Sbjct: 121 RAQEKRNLVLENRRLREAWAHDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGT 180 Query: 181 GKEVVARQLHAASGRKGPFVALNCGALPETVFESEIFGHEPGAFTGAQKRRIGKLEYANG 240 GKEVVARQLHAASGRKGPFVALNCGALPETVFESEIFGHEPGAFTGAQKRRIGKLEYANG Sbjct: 181 GKEVVARQLHAASGRKGPFVALNCGALPETVFESEIFGHEPGAFTGAQKRRIGKLEYANG 240 Query: 241 GTLFLDEIESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLAAEGQF 300 GTLFLDEIESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLAAEGQF Sbjct: 241 GTLFLDEIESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLAAEGQF 300 Query: 301 REDLYYRIGVVAIDLPALNQRREDIALLLAHFCQAAAVRYRRESPAWSAAQMQQWQQRDW 360 REDLYYRIGVVAIDLPALNQRREDIALLLAHFCQAAAVRYRRESPAWSAAQMQQWQQRDW Sbjct: 301 REDLYYRIGVVAIDLPALNQRREDIALLLAHFCQAAAVRYRRESPAWSAAQMQQWQQRDW 360 Query: 361 PGNVRELRNFADRWVLGVEQMAASAVSSAVPVLSSLPEQVEQFEAGLIAAALKDSEGSVA 420 PGNVRELRNFADRWVLGVEQMAASAVSSAVPVLSSLPEQVEQFEAGLIAAALKDSEGSVA Sbjct: 361 PGNVRELRNFADRWVLGVEQMAASAVSSAVPVLSSLPEQVEQFEAGLIAAALKDSEGSVA 420 Query: 421 VAAERLGIPKKTLYDKIRKYQLAGS 445 VAAERLGIPKKTLYDKIRKYQLAGS Sbjct: 421 VAAERLGIPKKTLYDKIRKYQLAGS 445 >ref|YP_004752901.1| nitrogen regulation protein NR(I) [Collimonas fungivorans Ter331] gb|AEK62078.1| Nitrogen regulation protein NR(I) [Collimonas fungivorans Ter331] Length = 456 Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust. Identities = 310/437 (70%), Positives = 366/437 (83%), Gaps = 3/437 (0%) Query: 10 ALLIEDEQTVRRATAQALELGGFAVTACASAEEALPLITRDFAGVVVSDVRLPGLSGLDV 69 A+LIEDEQ VR A AQ LELGGF V AC S E+A ++ FAGV+V+DVRLPG SGL++ Sbjct: 11 AVLIEDEQAVREAIAQTLELGGFTVHACDSVEQAQAWLSPGFAGVIVTDVRLPGRSGLEL 70 Query: 70 LARVVAIDHDLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFSSDTLLEIALRAQEKRNLV 129 L +VV +D DLPVIVVTGHGDV MAV+AMRAGAYDF+EKPF+++ L+E A RAQEKR+L+ Sbjct: 71 LTQVVTLDPDLPVIVVTGHGDVSMAVDAMRAGAYDFIEKPFAAERLMETAHRAQEKRSLI 130 Query: 130 LENRRLREAWAHDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGTGKEVVARQL 189 LENRRL+ AW P++P L+GQS AIE+VRT+IRS+GP VD+L+NGQTG+GKEVVARQL Sbjct: 131 LENRRLKAAWVAHPDMPSLIGQSAAIEKVRTMIRSVGPTMVDILVNGQTGSGKEVVARQL 190 Query: 190 HAASGRKGPFVALNCGALPETVFESEIFGHEPGAFTGAQKRRIGKLEYANGGTLFLDEIE 249 H ASGRKG FVA+NCGALPE VFESEIFGHE GAFT AQKRRIGKLEYA GGT+FLDEIE Sbjct: 191 HVASGRKGSFVAINCGALPEAVFESEIFGHEAGAFTSAQKRRIGKLEYAKGGTVFLDEIE 250 Query: 250 SMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLAAEGQFREDLYYRIG 309 SMPLALQVKLLRVLQER+LERLGGNE +AIDCR++AASKA+LL+++A+G FREDLYYRIG Sbjct: 251 SMPLALQVKLLRVLQERKLERLGGNEPIAIDCRIIAASKANLLQMSAQGSFREDLYYRIG 310 Query: 310 VVAIDLPALNQRREDIALLLAHFCQAAAVRYRRESPAWSAAQMQQWQQRDWPGNVRELRN 369 VV+IDLP LN+RREDI LLLAHF Q AA+RY+R P W+ AQM QWQ RDWPGNVRELRN Sbjct: 311 VVSIDLPRLNERREDIPLLLAHFIQGAALRYQRPLPQWTLAQMAQWQTRDWPGNVRELRN 370 Query: 370 FADRWVLGVEQMAASAV---SSAVPVLSSLPEQVEQFEAGLIAAALKDSEGSVAVAAERL 426 FADR VLGV + A +P SLP+Q++ +E LIA L S G+VA+AA+RL Sbjct: 371 FADRLVLGVAEGVADLTVQEGDDLPSGVSLPQQMDNYERMLIAETLNASGGNVAIAADRL 430 Query: 427 GIPKKTLYDKIRKYQLA 443 G+PKKTLYDK++KYQLA Sbjct: 431 GLPKKTLYDKLKKYQLA 447 >ref|ZP_08272677.1| putative response regulator of the c4-dicarboxylate transport two-component regulatory system transcription regulator protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF33855.1| putative response regulator of the c4-dicarboxylate transport two-component regulatory system transcription regulator protein [Oxalobacteraceae bacterium IMCC9480] Length = 444 Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust. Identities = 304/432 (70%), Positives = 356/432 (82%), Gaps = 1/432 (0%) Query: 11 LLIEDEQTVRRATAQALELGGFAVTACASAEEALPLITRDFAGVVVSDVRLPGLSGLDVL 70 +L+EDE +R AT Q LELGGF V CASAE+A L+ RD+ GV+V+DVRLPG SGL +L Sbjct: 7 VLVEDEAALRLATGQTLELGGFTVLPCASAEQADGLLVRDYPGVLVTDVRLPGRSGLQLL 66 Query: 71 ARVVAIDHDLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFSSDTLLEIALRAQEKRNLVL 130 A+V+AID DLPV+VVTGHGDV MAVEAMRAGAYDF+EKPF+++ LL RAQEKR+LVL Sbjct: 67 AQVMAIDADLPVVVVTGHGDVEMAVEAMRAGAYDFIEKPFAAERLLATVRRAQEKRDLVL 126 Query: 131 ENRRLREAWAHDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGTGKEVVARQLH 190 NRRL+ AW P+LPPL+GQS AIERVRTL+ SLGP VDVLINGQTG+GKEVVARQLH Sbjct: 127 ANRRLQAAWLQQPDLPPLLGQSAAIERVRTLVASLGPTSVDVLINGQTGSGKEVVARQLH 186 Query: 191 AASGRKGPFVALNCGALPETVFESEIFGHEPGAFTGAQKRRIGKLEYANGGTLFLDEIES 250 AASGRKG FVA+NCGALPE+VFESE+FGHE GAFT AQKRRIGKLEYA+GGTLFLDEIES Sbjct: 187 AASGRKGHFVAINCGALPESVFESEMFGHEAGAFTSAQKRRIGKLEYADGGTLFLDEIES 246 Query: 251 MPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLAAEGQFREDLYYRIGV 310 MPL LQ+KLLRVLQER+LERLGGNE V DCRV+AASKADLL+L+A G FREDLYYRI V Sbjct: 247 MPLNLQIKLLRVLQERKLERLGGNEPVPFDCRVIAASKADLLQLSASGAFREDLYYRISV 306 Query: 311 VAIDLPALNQRREDIALLLAHFCQAAAVRYRRESPAWSAAQMQQWQQRDWPGNVRELRNF 370 V+I LP L QRREDI LLLAHF QAAA+R++R P WS AQ+ WQ RDWPGNVRELRN Sbjct: 307 VSIGLPRLAQRREDIPLLLAHFVQAAALRHQRPVPLWSTAQLLHWQSRDWPGNVRELRNV 366 Query: 371 ADRWVLGVEQMAASAVSSAVPVLSSLPEQVEQFEAGLIAAALKDSEGSVAVAAERLGIPK 430 A+R VLGV + +A V L ++ +E+ LI AAL S+ SVA+AAERLG+P+ Sbjct: 367 AERLVLGVLEDSA-VVEQDDAGTHHLTTLLDAYESMLITAALNASDASVALAAERLGLPR 425 Query: 431 KTLYDKIRKYQL 442 KTLYDK++K+++ Sbjct: 426 KTLYDKLKKHRI 437 >ref|YP_003450638.1| hypothetical protein AZL_a05630 [Azospirillum sp. B510] dbj|BAI74094.1| hypothetical protein AZL_a05630 [Azospirillum sp. B510] Length = 451 Score = 515 bits (1326), Expect = e-144, Method: Compositional matrix adjust. Identities = 271/443 (61%), Positives = 328/443 (74%), Gaps = 6/443 (1%) Query: 4 PGGAASALLIEDEQTVRRATAQALELGGFAVTACASAEEALPLITRDFAGVVVSDVRLPG 63 P A S L ++DE+ VR A QALEL GF VTAC AE AL + RD+ G +V+DVR+P Sbjct: 6 PEAAGSVLFVDDERAVRLAGQQALELAGFEVTACDGAERALRHVARDWPGCLVTDVRMPQ 65 Query: 64 LSGLDVLARVVAIDHDLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFSSDTLLEIALRAQ 123 + GL +LARV ID DLPVI++TGHGDV MAVEAMR GAYDF+EKPF SD L E+A RA Sbjct: 66 MDGLALLARVREIDPDLPVILITGHGDVPMAVEAMRNGAYDFLEKPFPSDRLTEVARRAV 125 Query: 124 EKRNLVLENRRLRE--AWAHDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGTG 181 EKR LVLENRRLR A DP +VG++P IER+R I ++ D DVL+ G+TGTG Sbjct: 126 EKRRLVLENRRLRARIAGGSDPA-ETIVGRTPGIERLRATIAAVADTDADVLVFGETGTG 184 Query: 182 KEVVARQLHAASGR-KGPFVALNCGALPETVFESEIFGHEPGAFTGAQKRRIGKLEYANG 240 KE+VAR LHAASGR K PFVALNCGA+PET+FESE+FGHE GAFTGA KRRIG++E+A G Sbjct: 185 KEMVARALHAASGRRKNPFVALNCGAMPETIFESELFGHEAGAFTGAAKRRIGRIEHAGG 244 Query: 241 GTLFLDEIESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLAAEGQF 300 GTLFLDEIESMPLALQVKLLRV+QER +E LG NE V +D RVVAA+KADL + A G+F Sbjct: 245 GTLFLDEIESMPLALQVKLLRVIQERVVEPLGSNEQVPVDLRVVAATKADLRQAADAGKF 304 Query: 301 REDLYYRIGVVAIDLPALNQRREDIALLLAHFCQAAAVRYRRESPAWSAAQMQQWQQRDW 360 R DLYYR+ VV + +P L +RR+DI LL HF AA RY RE + QMQ+ +DW Sbjct: 305 RADLYYRLNVVVLTIPPLRERRDDIPLLFQHFVAQAAGRYNREPGTPTREQMQRLIGQDW 364 Query: 361 PGNVRELRNFADRWVLGVEQMAASAVSSAVPVLSSLPEQVEQFEAGLIAAALKDSEGSVA 420 PGNVRELRN ADR+VLG+E +A + VS+ P+ SL EQV+ +E GLI + L GSV Sbjct: 365 PGNVRELRNAADRFVLGLEDVAPAPVSAPSPL--SLAEQVDLYEKGLIQSELARQRGSVK 422 Query: 421 VAAERLGIPKKTLYDKIRKYQLA 443 A E L IP+KT YDK+++Y L+ Sbjct: 423 AAIEALNIPRKTFYDKLKRYGLS 445 >gb|EGW61907.1| two component, sigma54 specific, transcriptional regulator, Fis family [Dechlorosoma suillum PS] Length = 448 Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust. Identities = 265/438 (60%), Positives = 331/438 (75%), Gaps = 2/438 (0%) Query: 7 AASALLIEDEQTVRRATAQALELGGFAVTACASAEEALPLITRDFAGVVVSDVRLPGLSG 66 A L+ED+ VR +AQAL L G V + A AE AL + + G VVSDVRLPG G Sbjct: 6 ALPVFLVEDDPAVRMGSAQALTLAGLEVRSFADAEGALAALAAELPGAVVSDVRLPGRDG 65 Query: 67 LDVLARVVAIDHDLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFSSDTLLEIALRAQEKR 126 + +L + +D +LPVI+VTGHGDV MAV+AMR GA+DF+EKPF+S+ L+ + +A EKR Sbjct: 66 IALLGELRQLDRELPVILVTGHGDVAMAVQAMRDGAHDFIEKPFTSEHLVRVTRQALEKR 125 Query: 127 NLVLENRRLREAWAHDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGTGKEVVA 186 L+LENRRL+EA LP ++GQ+PA++ VR L+ +L P DVD+LING+TG+GKEVVA Sbjct: 126 ALLLENRRLKEALPTQDGLP-VIGQTPAMQEVRRLVAALAPTDVDILINGETGSGKEVVA 184 Query: 187 RQLHAASGRKGPFVALNCGALPETVFESEIFGHEPGAFTGAQKRRIGKLEYANGGTLFLD 246 R +H+ASGR+GPFVA+NC ALPE+VFESE+FGHE GAFTGA KRRIGK+EYA+GGTLFLD Sbjct: 185 RAIHSASGRRGPFVAINCAALPESVFESEMFGHEAGAFTGAGKRRIGKIEYAHGGTLFLD 244 Query: 247 EIESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLAAEGQFREDLYY 306 EIESMPL LQVKLLR LQER +ERLGGN VA+DCRVVAASKADL L+ GQFR DLYY Sbjct: 245 EIESMPLNLQVKLLRALQERSIERLGGNAPVAVDCRVVAASKADLKALSEAGQFRADLYY 304 Query: 307 RIGVVAIDLPALNQRREDIALLLAHFCQAAAVRYRRESPAWSAAQMQQWQQRDWPGNVRE 366 R+ VV+IDLP L +R+EDI LL+ HF Q AA R+ RE PAW A++ +WQ + WPGNVRE Sbjct: 305 RLNVVSIDLPPLRRRQEDIPLLMGHFLQQAAKRFGREVPAWGPAELARWQAQPWPGNVRE 364 Query: 367 LRNFADRWVLGVEQ-MAASAVSSAVPVLSSLPEQVEQFEAGLIAAALKDSEGSVAVAAER 425 L+N A+R+ LG++Q AAS SA L ++E E G I AAL G+VA+AAER Sbjct: 365 LKNAAERFCLGLDQPQAASPAGSAPGAELPLARRLELAEQGFIEAALAACHGNVALAAER 424 Query: 426 LGIPKKTLYDKIRKYQLA 443 L +PKKTLYDK+ + Q+A Sbjct: 425 LQLPKKTLYDKLARLQIA 442 >ref|YP_001795631.1| c4-dicarboxylate transport transcriptional response regulator [Cupriavidus taiwanensis LMG 19424] emb|CAP62909.1| transcriptional response regulator, C4-DICARBOXYLATE TRANSPORT RESPONSE REGULATOR [Cupriavidus taiwanensis LMG 19424] Length = 445 Score = 495 bits (1275), Expect = e-138, Method: Compositional matrix adjust. Identities = 263/434 (60%), Positives = 319/434 (73%), Gaps = 2/434 (0%) Query: 11 LLIEDEQTVRRATAQALELGGFAVTACASAEEALPLITRDFAGVVVSDVRLPGLSGLDVL 70 L +EDE VR+ATAQ+LEL GF V A SAE A+P + FAGVVV+DVRLPG SGLD+L Sbjct: 12 LFVEDEPLVRQATAQSLELAGFRVLALPSAEAAIPHLHGAFAGVVVTDVRLPGASGLDLL 71 Query: 71 ARVVAIDHDLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFSSDTLLEIALRAQEKRNLVL 130 +PVI+VTGHGD+ MAV+AMR GAYDF+EKPF +D L + RA E+R L L Sbjct: 72 QHCRNAAPGVPVILVTGHGDITMAVQAMREGAYDFIEKPFGADRLTDTVRRALERRALEL 131 Query: 131 ENRRLREAWAHDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGTGKEVVARQLH 190 EN+ LR A ++G+SPAIE+VR L+ ++ P DV V+ING+TGTGKE+VAR LH Sbjct: 132 ENQALRRELAGPAAGTRIIGRSPAIEQVRALVANVAPTDVPVMINGETGTGKELVARSLH 191 Query: 191 AASGR-KGPFVALNCGALPETVFESEIFGHEPGAFTGAQKRRIGKLEYANGGTLFLDEIE 249 A SGR +GPF+ALNCGA+PE +FESE+FGHE GAFTGA KRRIGKLE+A+GGTLFLDEIE Sbjct: 192 ALSGRAEGPFIALNCGAVPEAIFESEMFGHEAGAFTGAGKRRIGKLEHASGGTLFLDEIE 251 Query: 250 SMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLAAEGQFREDLYYRIG 309 SMPLALQVKLLRVLQE LERLG N SV ID R+VAA+K D+ L A+G FREDLYYR+ Sbjct: 252 SMPLALQVKLLRVLQEGSLERLGSNASVKIDVRIVAAAKGDMDALVAQGSFREDLYYRLN 311 Query: 310 VVAIDLPALNQRREDIALLLAHFCQAAAVRYRRESPAWSAAQMQQWQQRDWPGNVRELRN 369 VV I LP L +RREDI L HF +AVRY+R +P S AQ Q QR WPGNVRELRN Sbjct: 312 VVTIALPPLRERREDIVPLFEHFSLVSAVRYQRPAPILSEAQRQALAQRPWPGNVRELRN 371 Query: 370 FADRWVLGVEQMAASAVSSAVPVLSS-LPEQVEQFEAGLIAAALKDSEGSVAVAAERLGI 428 ADR VLGV + + +A P S+ L E++E FE +IA AL + G+V+ AA+ L + Sbjct: 372 AADRMVLGVPEGGQAGAQAAGPDESAPLRERMEHFERAVIADALARTGGAVSQAADLLQV 431 Query: 429 PKKTLYDKIRKYQL 442 K TLYDKI++Y L Sbjct: 432 GKATLYDKIKRYGL 445 >ref|YP_004684157.1| C4-dicarboxylatetransporttranscriptional regulatory protein DctD [Cupriavidus necator N-1] gb|AEI75676.1| C4-dicarboxylatetransporttranscriptional regulatory protein DctD [Cupriavidus necator N-1] Length = 445 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 262/434 (60%), Positives = 318/434 (73%), Gaps = 2/434 (0%) Query: 11 LLIEDEQTVRRATAQALELGGFAVTACASAEEALPLITRDFAGVVVSDVRLPGLSGLDVL 70 L +EDE VR+ATAQ+LEL GFAV A SAE A+P + FAGVVV+DVRLPG SGLD+L Sbjct: 12 LFVEDEPLVRQATAQSLELAGFAVLALPSAEAAIPHLHGAFAGVVVTDVRLPGASGLDLL 71 Query: 71 ARVVAIDHDLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFSSDTLLEIALRAQEKRNLVL 130 +PVI+VTGHGD+ MAV+AMR GAYDF+EKPF +D L + RA E+R L L Sbjct: 72 QHCRNAAPGVPVILVTGHGDITMAVQAMREGAYDFIEKPFGADRLTDTVRRALERRALEL 131 Query: 131 ENRRLREAWAHDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGTGKEVVARQLH 190 EN+ LR A ++G+SPAI +VR L+ ++ P DV V+ING+TGTGKE+VAR LH Sbjct: 132 ENQALRRELAGPAAGTRIIGRSPAIGQVRALVANVAPTDVPVMINGETGTGKELVARSLH 191 Query: 191 AASGR-KGPFVALNCGALPETVFESEIFGHEPGAFTGAQKRRIGKLEYANGGTLFLDEIE 249 A SGR +GPF+ALNCGA+PE +FESE+FGHE GAFTGA KRRIGKLE+A+GGTLFLDEIE Sbjct: 192 ALSGRAEGPFIALNCGAVPEAIFESEMFGHEAGAFTGAGKRRIGKLEHASGGTLFLDEIE 251 Query: 250 SMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLAAEGQFREDLYYRIG 309 SMPLALQVKLLRVLQE LERLG N SV ID R+VAA+K D+ L A+G FREDLYYR+ Sbjct: 252 SMPLALQVKLLRVLQEGSLERLGSNASVKIDVRIVAAAKGDMDALVAQGSFREDLYYRLN 311 Query: 310 VVAIDLPALNQRREDIALLLAHFCQAAAVRYRRESPAWSAAQMQQWQQRDWPGNVRELRN 369 VV I LP L +RREDI L HF +AVRY+R +P S AQ Q QR WPGNVRELRN Sbjct: 312 VVTIALPPLRERREDIVPLFEHFSLVSAVRYQRPAPILSEAQRQALAQRPWPGNVRELRN 371 Query: 370 FADRWVLGVEQMAASAVSSAVP-VLSSLPEQVEQFEAGLIAAALKDSEGSVAVAAERLGI 428 ADR VLGV + + +A P + L E++E FE +IA AL + G+V+ AA+ L + Sbjct: 372 AADRMVLGVPEGGQAGAQAAGPDEAAPLRERMEHFERAVIADALARTGGAVSQAADLLQV 431 Query: 429 PKKTLYDKIRKYQL 442 K TLYDKI++Y L Sbjct: 432 GKATLYDKIKRYGL 445 >ref|YP_003603864.1| two component, sigma54 specific, transcriptional regulator, Fis family [Burkholderia sp. CCGE1002] gb|ADG14353.1| two component, sigma54 specific, transcriptional regulator, Fis family [Burkholderia sp. CCGE1002] Length = 449 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 256/435 (58%), Positives = 319/435 (73%), Gaps = 2/435 (0%) Query: 11 LLIEDEQTVRRATAQALELGGFAVTACASAEEALPLITRDFAGVVVSDVRLPGLSGLDVL 70 L IED++ VRRA+ Q+L+L GF V AS E A LI+ DF+GV+VSD+RLPG SGLD+L Sbjct: 8 LYIEDDELVRRASVQSLQLAGFDVIGHASVEAAAKLISADFSGVIVSDIRLPGASGLDLL 67 Query: 71 ARVVAIDHDLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFSSDTLLEIALRAQEKRNLVL 130 A+ D+PVI+VTGHGD+ MAV+AMR GAYDF+EKPF+S+ L+E RA E+R LVL Sbjct: 68 AQCHERAPDVPVILVTGHGDISMAVQAMRDGAYDFIEKPFASERLIETVRRALERRKLVL 127 Query: 131 ENRRLREAWA-HDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGTGKEVVARQL 189 EN LR A + P ++G+SPAIE+VR LI ++ P D VLING TG GKE++AR L Sbjct: 128 ENLALRRELAGQNAVAPRIIGRSPAIEQVRRLIANVAPTDASVLINGDTGAGKELIARSL 187 Query: 190 HAASGRKG-PFVALNCGALPETVFESEIFGHEPGAFTGAQKRRIGKLEYANGGTLFLDEI 248 H S R+ PF+A+NCGALPE +FESE+FG+EPGAFTGA KRRIGKLE+A+GGTLFLDEI Sbjct: 188 HELSPRRDKPFIAVNCGALPEPMFESEMFGYEPGAFTGAAKRRIGKLEHASGGTLFLDEI 247 Query: 249 ESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLAAEGQFREDLYYRI 308 ESMPLALQVKLLRVLQ+ LERLG N+ + +DCRVVAA+K D+ + A+G FR DL YR+ Sbjct: 248 ESMPLALQVKLLRVLQDGVLERLGSNQPIRVDCRVVAAAKGDMAEHVADGSFRRDLLYRL 307 Query: 309 GVVAIDLPALNQRREDIALLLAHFCQAAAVRYRRESPAWSAAQMQQWQQRDWPGNVRELR 368 VV I LP L++RREDI L HF AAVRY+R +P + Q QRDWPGNVRELR Sbjct: 308 NVVTIALPPLSERREDIVPLFEHFLLDAAVRYQRPAPMLTDRQRASLMQRDWPGNVRELR 367 Query: 369 NFADRWVLGVEQMAASAVSSAVPVLSSLPEQVEQFEAGLIAAALKDSEGSVAVAAERLGI 428 N ADR+VLG+ + L E+VEQFE +IA AL+ + G VAVAA+RL + Sbjct: 368 NAADRFVLGIADEPVLSFGEDDGTTHPLKERVEQFERAMIAEALEQAGGVVAVAADRLQL 427 Query: 429 PKKTLYDKIRKYQLA 443 K TLY+KI++Y LA Sbjct: 428 GKATLYEKIKRYGLA 442 >ref|ZP_03269977.1| two component, sigma54 specific, transcriptional regulator, Fis family [Burkholderia sp. H160] gb|EDZ98434.1| two component, sigma54 specific, transcriptional regulator, Fis family [Burkholderia sp. H160] Length = 449 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 256/435 (58%), Positives = 320/435 (73%), Gaps = 2/435 (0%) Query: 11 LLIEDEQTVRRATAQALELGGFAVTACASAEEALPLITRDFAGVVVSDVRLPGLSGLDVL 70 L IED++ VRRA+ Q+L+L GF V AS E A LI+ DF+GV+VSD+RLPG SGLD+L Sbjct: 8 LYIEDDELVRRASVQSLQLAGFDVIGHASVEAAAKLISADFSGVIVSDIRLPGASGLDLL 67 Query: 71 ARVVAIDHDLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFSSDTLLEIALRAQEKRNLVL 130 A+ D+PVI+VTGHGD+ MAV+AMR GAYDF+EKPF+S+ L+E RA E+R LVL Sbjct: 68 AQCHERAPDVPVILVTGHGDISMAVQAMRDGAYDFIEKPFASERLIETVRRALERRKLVL 127 Query: 131 ENRRLREAWA-HDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGTGKEVVARQL 189 EN LR A + P ++G+SPAIE+VR LI ++ P D VLING TG GKE++AR L Sbjct: 128 ENLALRRELAGQNAVAPRIIGRSPAIEQVRRLIANVAPTDASVLINGDTGAGKELIARSL 187 Query: 190 HAASGRKG-PFVALNCGALPETVFESEIFGHEPGAFTGAQKRRIGKLEYANGGTLFLDEI 248 H S R+ PF+A+NCGALPE +FESE+FG+EPGAFTGA KRRIGKLE+A+GGTLFLDEI Sbjct: 188 HELSPRRDKPFIAVNCGALPEPMFESEMFGYEPGAFTGAAKRRIGKLEHASGGTLFLDEI 247 Query: 249 ESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLAAEGQFREDLYYRI 308 ESMPLALQVKLLRVLQ+ LERLG N+ + ++CRVVAA+K D+ + A+G FR DL YR+ Sbjct: 248 ESMPLALQVKLLRVLQDGVLERLGSNQPIRVNCRVVAAAKGDMAEHVADGSFRRDLLYRL 307 Query: 309 GVVAIDLPALNQRREDIALLLAHFCQAAAVRYRRESPAWSAAQMQQWQQRDWPGNVRELR 368 VV I LP L++RREDI L HF AAVRY+R +P + Q QRDWPGNVRELR Sbjct: 308 NVVTIALPPLSERREDIVPLFEHFLLDAAVRYQRPAPMLTDRQRASLMQRDWPGNVRELR 367 Query: 369 NFADRWVLGVEQMAASAVSSAVPVLSSLPEQVEQFEAGLIAAALKDSEGSVAVAAERLGI 428 N ADR+VLG+ + V L E+VEQFE +IA AL+ + G VAVAA+RL + Sbjct: 368 NAADRFVLGIADEPVLSFGDDEGVTHPLKERVEQFERAMIAEALEQAGGVVAVAADRLQL 427 Query: 429 PKKTLYDKIRKYQLA 443 K TLY+KI++Y LA Sbjct: 428 GKATLYEKIKRYGLA 442 >ref|YP_724816.1| response regulator of C4-dicarboxylate transportsystem [Ralstonia eutropha H16] emb|CAJ91448.1| response regulator of C4-dicarboxylate transportsystem [Ralstonia eutropha H16] Length = 445 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 261/434 (60%), Positives = 317/434 (73%), Gaps = 2/434 (0%) Query: 11 LLIEDEQTVRRATAQALELGGFAVTACASAEEALPLITRDFAGVVVSDVRLPGLSGLDVL 70 L +EDE VR+ATAQ+LEL GFAV A SAE A+P + FAGVVV+DVRLPG SGLD+L Sbjct: 12 LFVEDEPLVRQATAQSLELAGFAVLALPSAEAAIPHLHGAFAGVVVTDVRLPGASGLDLL 71 Query: 71 ARVVAIDHDLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFSSDTLLEIALRAQEKRNLVL 130 +PVI+VTGHGD+ MAV+AMR GAYDF+EKPF +D L + RA E+R L L Sbjct: 72 QHCRNAAPGVPVILVTGHGDITMAVQAMREGAYDFIEKPFGADRLTDTVRRALERRALEL 131 Query: 131 ENRRLREAWAHDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGTGKEVVARQLH 190 EN+ LR A ++G+SPAI +VR L+ ++ P DV V+ING+TGTGKE+VAR LH Sbjct: 132 ENQALRRELAGPAAGTRIIGRSPAIGQVRALVANVAPTDVPVMINGETGTGKELVARSLH 191 Query: 191 AASGR-KGPFVALNCGALPETVFESEIFGHEPGAFTGAQKRRIGKLEYANGGTLFLDEIE 249 A SGR +GPF+ALNCGA+PE +FESE+FGHE GAFTGA KRRIGKLE+A+GGTLFLDEIE Sbjct: 192 ALSGRAEGPFIALNCGAVPEAIFESEMFGHEAGAFTGAGKRRIGKLEHASGGTLFLDEIE 251 Query: 250 SMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLAAEGQFREDLYYRIG 309 SMPLALQVKLLRVLQE LERLG N SV ID R+VAA+K D+ L +G FREDLYYR+ Sbjct: 252 SMPLALQVKLLRVLQEGSLERLGSNASVKIDVRIVAAAKGDMDALVVQGSFREDLYYRLN 311 Query: 310 VVAIDLPALNQRREDIALLLAHFCQAAAVRYRRESPAWSAAQMQQWQQRDWPGNVRELRN 369 VV I LP L +RREDI L HF +AVRY+R +P S AQ Q QR WPGNVRELRN Sbjct: 312 VVTIALPPLRERREDIVPLFEHFSLVSAVRYQRPAPILSEAQRQALAQRPWPGNVRELRN 371 Query: 370 FADRWVLGVEQMAASAVSSAVP-VLSSLPEQVEQFEAGLIAAALKDSEGSVAVAAERLGI 428 ADR VLGV + + +A P + L E++E FE +IA AL + G+V+ AA+ L + Sbjct: 372 AADRMVLGVPEGGQAGAQAAGPDETAPLRERMEHFERAVIADALARTGGAVSQAADLLQV 431 Query: 429 PKKTLYDKIRKYQL 442 K TLYDKI++Y L Sbjct: 432 GKATLYDKIKRYGL 445