BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0035.p (404 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776759.1| anti-restriction protein ArdA [Herbaspirillu... 721 0.0 ref|YP_001860030.1| diguanylate cyclase [Burkholderia phymatum S... 353 4e-95 ref|YP_607009.1| hypothetical protein PSEEN1308 [Pseudomonas ent... 291 2e-76 ref|YP_001266534.1| diguanylate cyclase [Pseudomonas putida F1] ... 287 2e-75 ref|YP_001477425.1| diguanylate cyclase [Serratia proteamaculans... 285 1e-74 ref|ZP_06191964.1| diguanylate cyclase [Serratia odorifera 4Rx13... 285 1e-74 ref|YP_004499614.1| diguanylate cyclase [Serratia sp. AS12] >gi|... 284 2e-74 gb|ADR58880.1| Diguanylate cyclase [Pseudomonas putida BIRD-1] 284 2e-74 ref|ZP_08141238.1| diguanylate cyclase [Pseudomonas sp. TJI-51] ... 283 5e-74 ref|NP_743316.1| diguanylate cyclase [Pseudomonas putida KT2440]... 283 5e-74 >ref|YP_003776759.1| anti-restriction protein ArdA [Herbaspirillum seropedicae SmR1] gb|ADJ64851.1| anti-restriction ArdA protein [Herbaspirillum seropedicae SmR1] Length = 354 Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/354 (99%), Positives = 354/354 (100%) Query: 51 VRFVKRIYLLRTIGLGVGFFCVAAAFVQQPVAWPLWALLVFHGYLWPQVARAWALASRIP 110 +RFVKRIYLLRTIGLGVGFFCVAAAFVQQPVAWPLWALLVFHGYLWPQVARAWALASRIP Sbjct: 1 MRFVKRIYLLRTIGLGVGFFCVAAAFVQQPVAWPLWALLVFHGYLWPQVARAWALASRIP 60 Query: 111 YRAERRNLVIDAAFGGFWIAAMQGNLVPSAVILSMLSMDNIAAGGLRLFMRGLYASIAAC 170 YRAERRNLVIDAAFGGFWIAAMQGNLVPSAVILSMLSMDNIAAGGLRLFMRGLYASIAAC Sbjct: 61 YRAERRNLVIDAAFGGFWIAAMQGNLVPSAVILSMLSMDNIAAGGLRLFMRGLYASIAAC 120 Query: 171 ALGWWLLDAHWSPQSDLPTILACLPMMALYPLALGKSTYEMSKKLAERSRQFEVVSQMDG 230 ALGWWLLDAHWSPQSDLPTILACLPMMALYPLALGKSTYEMSKKLAERSRQFEVVSQMDG Sbjct: 121 ALGWWLLDAHWSPQSDLPTILACLPMMALYPLALGKSTYEMSKKLAERSRQFEVVSQMDG 180 Query: 231 LTHLFNRRYWESLLIEEFSQRRKAPGAQQKESFLLLLDLDHFKRINDTHGHLVGDEVLRN 290 LTHLFNRRYWESLLIEEFSQRRKAPGAQQKESFLLLLDLDHFKRINDTHGHLVGDEVLRN Sbjct: 181 LTHLFNRRYWESLLIEEFSQRRKAPGAQQKESFLLLLDLDHFKRINDTHGHLVGDEVLRN 240 Query: 291 FAQLLRIHLREEDLIGRYGGEEFVVILRNIAHADALHLSQRLVERARASQDGVNKLYGCT 350 FAQLLRIHLR+EDLIGRYGGEEFVVILRNIAHADALHLSQRLVERARASQDGVNKLYGCT Sbjct: 241 FAQLLRIHLRKEDLIGRYGGEEFVVILRNIAHADALHLSQRLVERARASQDGVNKLYGCT 300 Query: 351 VSAGLVPFTSDMEAHFVWLQRADHAMYCAKANGRDRLVVWEATLVRNAEPATVC 404 VSAGLVPFTSDMEAHFVWLQRADHAMYCAKANGRDRLVVWEATLVRNAEPATVC Sbjct: 301 VSAGLVPFTSDMEAHFVWLQRADHAMYCAKANGRDRLVVWEATLVRNAEPATVC 354 >ref|YP_001860030.1| diguanylate cyclase [Burkholderia phymatum STM815] gb|ACC72984.1| diguanylate cyclase [Burkholderia phymatum STM815] Length = 359 Score = 353 bits (905), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 177/342 (51%), Positives = 236/342 (69%), Gaps = 4/342 (1%) Query: 48 GKGVRFVKRIYLLRTIGLGVGFFCVAAAFVQQPVAWPLWALLVFHGYLWPQVARAWALAS 107 G+G FV+R+Y LR GLG+GFFCVA+ V Q LW+LLVFHG++WP VAR ALA Sbjct: 10 GQGKSFVERVYRLRIAGLGLGFFCVASVLVLQHRGAVLWSLLVFHGFVWPHVARRAALAC 69 Query: 108 RIPYRAERRNLVIDAAFGGFWIAAMQGNLVPSAVILSMLSMDNIAAGGLRLFMRGLYASI 167 +P+R E NL+IDA FGGFW+ AM+ N++P+A+IL+M+SM+NI AGGL LF RG+ A + Sbjct: 70 EVPFRGEHLNLMIDAMFGGFWVVAMRFNVLPAALILAMVSMNNIGAGGLPLFARGVIAHV 129 Query: 168 AACALGWWLLDAHWSPQSDLPTILACLPMMALYPLALGKSTYEMSKKLAERSRQFEVVSQ 227 +G + +SP S +PTILACLP + +YPLALG ++Y +S KLA+R+R+ E +S+ Sbjct: 130 LGVLVGLVTVGFMFSPMSQMPTILACLPFLLIYPLALGFTSYRLSLKLAQRTRELEHLSR 189 Query: 228 MDGLTHLFNRRYWESLLIEEFSQRRKAPGAQQKESFLLLLDLDHFKRINDTHGHLVGDEV 287 DGLT L+NRR+WE LL +EF + R A + S L+L+DLDHFKRINDT GH GD V Sbjct: 190 TDGLTRLWNRRHWEGLLADEFERCR----ANRYASCLMLIDLDHFKRINDTMGHPAGDAV 245 Query: 288 LRNFAQLLRIHLREEDLIGRYGGEEFVVILRNIAHADALHLSQRLVERARASQDGVNKLY 347 L++FA LLR H R D IGRYGGEEF V+L +A +++ LV+R R +K Sbjct: 246 LQSFADLLRSHFRGGDSIGRYGGEEFGVVLPGATLREAHTIAKVLVQRVREKTKEASKEC 305 Query: 348 GCTVSAGLVPFTSDMEAHFVWLQRADHAMYCAKANGRDRLVV 389 CT+S G+ T D+ + WLQ D ++Y AKA GRDR+VV Sbjct: 306 PCTISVGIAQLTDDLPDYHTWLQEVDRSLYQAKATGRDRIVV 347 >ref|YP_607009.1| hypothetical protein PSEEN1308 [Pseudomonas entomophila L48] emb|CAK14199.1| conserved hypothetical protein; GGDEF domain protein [Pseudomonas entomophila L48] Length = 358 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 160/342 (46%), Positives = 212/342 (61%), Gaps = 8/342 (2%) Query: 48 GKGVRFVKRIYLLRTIGLGVGFFCVAAAFVQQPVAWP--LWALLVFHGYLWPQVARAWAL 105 GKG+ FV+RIYL R IGLG+G F V AA P+A P WALL+F+G WP VA AWA Sbjct: 7 GKGLSFVRRIYLPRIIGLGIGLFSVMAAVA--PLALPHWAWALLLFNGLAWPHVAYAWAR 64 Query: 106 ASRIPYRAERRNLVIDAAFGGFWIAAMQGNLVPSAVILSMLSMDNIAAGGLRLFMRGLYA 165 S PY+AE+RN+++D+ GGFW AAM N +P ILSM++M+N+AAGG RL +RGL A Sbjct: 65 HSANPYQAEQRNMLLDSLMGGFWTAAMHFNPLPGVTILSMMTMNNVAAGGKRLLVRGLLA 124 Query: 166 SIAACALGWWLLDAHWSPQSDLPTILACLPMMALYPLALGKSTYEMSKKLAERSRQFEVV 225 + L LL PQ+ +LACLPM+ LYPLALG Y+++ KLAE R+ + Sbjct: 125 QLCGMLLASALLGTGLQPQATQLQVLACLPMLTLYPLALGGVCYQLAIKLAEHKRRLSAL 184 Query: 226 SQMDGLTHLFNRRYWESLLIEEFSQRRKAPGAQQKESFLLLLDLDHFKRINDTHGHLVGD 285 S+ D LT L N W+ LL+ +F ++ QQ + + L+D+DHFK INDT+GH+VGD Sbjct: 185 SRTDSLTGLLNHGSWKDLLLLKFQICQQ----QQLPAVIALIDIDHFKTINDTYGHVVGD 240 Query: 286 EVLRNFAQLLRIHLREEDLIGRYGGEEFVVILRNIAHADALHLSQRLVERARASQDGVNK 345 VLR +Q L+ LRE+DL GRYGG+EF VIL A A +RL ER ++ Sbjct: 241 CVLRQLSQELKRSLREDDLAGRYGGDEFCVILPGTQEAHACQAMERLRERVGDYRNPQLP 300 Query: 346 LYGCTVSAGLVPFTSDMEAHFVWLQRADHAMYCAKANGRDRL 387 ++S GL F + WL AD A+Y AK GRD++ Sbjct: 301 DLRISLSIGLAAFQPGLPTPEHWLAEADRALYAAKHQGRDQV 342 >ref|YP_001266534.1| diguanylate cyclase [Pseudomonas putida F1] gb|ABQ77350.1| diguanylate cyclase [Pseudomonas putida F1] Length = 357 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 162/357 (45%), Positives = 219/357 (61%), Gaps = 8/357 (2%) Query: 47 IGKGVRFVKRIYLLRTIGLGVGFFCVAAAFVQ-QPVAWPLWALLVFHGYLWPQVARAWAL 105 IGKG+ FVKRIYL R IGLG+G F V AA P +W W L++F+G LWP VA WA Sbjct: 5 IGKGLSFVKRIYLPRVIGLGIGLFTVMAAIAPLSPPSWT-WLLVLFNGLLWPHVAYQWAA 63 Query: 106 ASRIPYRAERRNLVIDAAFGGFWIAAMQGNLVPSAVILSMLSMDNIAAGGLRLFMRGLYA 165 S PY+AE+RNL++D+ GGFW AAM N +PS +LSM++M+N+AAGG R+ RG A Sbjct: 64 HSTTPYQAEQRNLLLDSLMGGFWTAAMHFNPLPSVTVLSMMTMNNVAAGGKRMVFRGALA 123 Query: 166 SIAACALGWWLLDAHWSPQSDLPTILACLPMMALYPLALGKSTYEMSKKLAERSRQFEVV 225 +A LL + + ACLPM+ALYPLALG Y+++ KL + R+ + Sbjct: 124 QLAGMLAAILLLGPGLQLIATPLQVYACLPMLALYPLALGWVCYQLAIKLGDHKRRLSAL 183 Query: 226 SQMDGLTHLFNRRYWESLLIEEFSQRRKAPGAQQKESFLLLLDLDHFKRINDTHGHLVGD 285 S D LT LFN W+ LL +F R+ +Q + + L+D+DHFK INDT GH+VGD Sbjct: 184 SLTDSLTGLFNHGAWKDLLQLKFQACRQ----RQGHAVIALIDIDHFKTINDTFGHVVGD 239 Query: 286 EVLRNFAQLLRIHLREEDLIGRYGGEEFVVILRNIAHADALHLSQRLVERARASQDGVNK 345 VLR + LR LRE D GRYGG+EF VIL I+ A A + +RL ER + ++ Sbjct: 240 CVLRQLSAELRRSLREGDQAGRYGGDEFCVILPEISEAQACQVMERLRERVSSYRNTQLP 299 Query: 346 LYGCTVSAGLVPFTSDMEAHFVWLQRADHAMYCAKANGRDRL--VVWEATLVRNAEP 400 ++S GL PF +++E+ WL++AD A+Y AK GRD++ EA +R A P Sbjct: 300 HLRISLSIGLSPFEANLESPEHWLEQADKALYIAKHAGRDQVNFARGEAAALRLAYP 356 >ref|YP_001477425.1| diguanylate cyclase [Serratia proteamaculans 568] gb|ABV40297.1| diguanylate cyclase [Serratia proteamaculans 568] Length = 353 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 151/345 (43%), Positives = 212/345 (61%), Gaps = 16/345 (4%) Query: 49 KGVRFVKRIYLLRTIGLGVGFFCVAAAFVQQPVAWPLWALLVFHGYLWPQVARAWALASR 108 G+ F +R YL R +GLG+GF CV + F Q ++ +W LL+FHG++WP +A WA S Sbjct: 12 SGLSFARRTYLPRVVGLGIGFICVFSVFYTQKTSYWVWGLLIFHGFIWPHLAYQWARRSA 71 Query: 109 IPYRAERRNLVIDAAFGGFWIAAMQGNLVPSAVILSMLSMDNIAAGGLRLFMRGLYASIA 168 +P++AE RNL+ID+ FGG W+A M N +PS VILSM+ M+N+A+ G LF +GL + Sbjct: 72 MPFKAEIRNLLIDSFFGGLWVAMMAFNALPSVVILSMMGMNNMASAGKSLFFKGLAVQVL 131 Query: 169 ACALGWWLLDAHWSPQSDLPTILACLPMMALYPLALGKSTYEMSKKLAERSRQFEVVSQM 228 + LL + PQS I CLPM+ YP+ LG TY +K+LAE+ ++ +S Sbjct: 132 SALAISALLGFPFQPQSTPLQIYLCLPMIYFYPILLGLVTYRTAKRLAEKKQELLRISMR 191 Query: 229 DGLTHLFNRRYWESLLIEEFSQRRKAPGAQQKESFLLLLDLDHFKRINDTHGHLVGDEVL 288 DGLT L+NRR+WE LL +F R+ Q + L+L+D+DHFK INDT GH +GDE L Sbjct: 192 DGLTGLYNRRHWEHLLHHQFDSCRR----YQHSATLILMDIDHFKTINDTFGHALGDEAL 247 Query: 289 RNFAQLLRIHLREEDLIGRYGGEEFVVILRNIAHADA----LHLSQRLVERA--RASQDG 342 A+ L I LR D++GRYGG+EF +L N + A L + +RL E A Q Sbjct: 248 AVLAEELLIGLRAVDIVGRYGGDEFGAVLPNTSAEQASIALLRIQERLNEIVFREAPQLR 307 Query: 343 VNKLYGCTVSAGLVPFTSDMEAHFVWLQRADHAMYCAKANGRDRL 387 +N +SAG+ + DM + WL+ AD+A+Y AK NGR+RL Sbjct: 308 LN------ISAGIADYHGDMSGYLDWLKAADNALYRAKNNGRNRL 346 >ref|ZP_06191964.1| diguanylate cyclase [Serratia odorifera 4Rx13] gb|EFA15674.1| diguanylate cyclase [Serratia odorifera 4Rx13] Length = 354 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 152/339 (44%), Positives = 204/339 (60%), Gaps = 4/339 (1%) Query: 49 KGVRFVKRIYLLRTIGLGVGFFCVAAAFVQQPVAWPLWALLVFHGYLWPQVARAWALASR 108 G+ F +R YL R +GLG+GF CV + QP A +W LL+FHG++WP +A WA S Sbjct: 13 SGLSFARRTYLPRIVGLGIGFLCVFSVLHTQPSAPWVWGLLIFHGFIWPHIAYQWARRSA 72 Query: 109 IPYRAERRNLVIDAAFGGFWIAAMQGNLVPSAVILSMLSMDNIAAGGLRLFMRGLYASIA 168 P++AE RNL+ID+ FGG W A M N +PS VILSM+ M+NIAA G LF +GL A +A Sbjct: 73 TPFKAETRNLLIDSFFGGLWAAMMAFNALPSVVILSMMGMNNIAAAGKTLFFKGLVAQLA 132 Query: 169 ACALGWWLLDAHWSPQSDLPTILACLPMMALYPLALGKSTYEMSKKLAERSRQFEVVSQM 228 LL + PQS I CLPM+ LYP LG TY +K+LA++ ++ +S Sbjct: 133 GALTVSALLGFPFQPQSTPLQIYLCLPMIYLYPALLGLVTYRTAKRLAQKKQELLRISMR 192 Query: 229 DGLTHLFNRRYWESLLIEEFSQRRKAPGAQQKESFLLLLDLDHFKRINDTHGHLVGDEVL 288 DGLT L+NRR+WE LL +F R+ Q + L+L+D+D FK INDT GH +GDE L Sbjct: 193 DGLTGLYNRRHWEHLLHHQFDSCRR----YQHTATLILMDVDRFKTINDTFGHALGDEAL 248 Query: 289 RNFAQLLRIHLREEDLIGRYGGEEFVVILRNIAHADALHLSQRLVERARASQDGVNKLYG 348 A+ L I LR D++GRYGG+EF +L N + A QR+ ER Sbjct: 249 AVLAEELLIGLRAVDIVGRYGGDEFGAVLPNTSAEQASIALQRIQERLNDIIFREAPQLR 308 Query: 349 CTVSAGLVPFTSDMEAHFVWLQRADHAMYCAKANGRDRL 387 +SAG+ + DM + WL+ AD+A+Y AK NGR+RL Sbjct: 309 LNISAGIADYHGDMGGYLDWLKAADNALYRAKNNGRNRL 347 >ref|YP_004499614.1| diguanylate cyclase [Serratia sp. AS12] ref|YP_004504566.1| diguanylate cyclase [Serratia sp. AS9] gb|AEF44305.1| diguanylate cyclase [Serratia sp. AS9] gb|AEF49257.1| diguanylate cyclase [Serratia sp. AS12] gb|AEG26964.1| diguanylate cyclase [Serratia sp. AS13] Length = 353 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 152/339 (44%), Positives = 205/339 (60%), Gaps = 4/339 (1%) Query: 49 KGVRFVKRIYLLRTIGLGVGFFCVAAAFVQQPVAWPLWALLVFHGYLWPQVARAWALASR 108 G+ F +R YL R +GLG+GF CV + QP A +W LL+FHG++WP VA WA S Sbjct: 12 SGLSFARRTYLPRIVGLGIGFLCVFSVLHSQPSAPWVWGLLIFHGFIWPHVAYQWARRSA 71 Query: 109 IPYRAERRNLVIDAAFGGFWIAAMQGNLVPSAVILSMLSMDNIAAGGLRLFMRGLYASIA 168 +P++AE RNL+ID+ FGG W A M N +PS VILSM+ M+NIAA G LF +GL A +A Sbjct: 72 MPFKAETRNLLIDSFFGGLWAAMMAFNALPSVVILSMMGMNNIAAAGKTLFFKGLVAQLA 131 Query: 169 ACALGWWLLDAHWSPQSDLPTILACLPMMALYPLALGKSTYEMSKKLAERSRQFEVVSQM 228 LL + PQS I CLPM+ LYP LG TY +K+LA++ ++ +S Sbjct: 132 GALTVSALLGFPFQPQSTPLQIYLCLPMIYLYPALLGLVTYRTAKRLAQKKQELLRISMR 191 Query: 229 DGLTHLFNRRYWESLLIEEFSQRRKAPGAQQKESFLLLLDLDHFKRINDTHGHLVGDEVL 288 DGLT L+NRR+WE LL +F R+ Q + L+L+D+D FK INDT GH +GDE L Sbjct: 192 DGLTGLYNRRHWEHLLHHQFDSCRR----YQHTATLILMDVDRFKTINDTFGHALGDEAL 247 Query: 289 RNFAQLLRIHLREEDLIGRYGGEEFVVILRNIAHADALHLSQRLVERARASQDGVNKLYG 348 A+ L I LR D++GRYGG+EF +L N + A QR+ ER Sbjct: 248 AVLAEELLIGLRAVDIVGRYGGDEFGAVLPNTSAEQASIALQRIQERLNGIIFREAPQLR 307 Query: 349 CTVSAGLVPFTSDMEAHFVWLQRADHAMYCAKANGRDRL 387 +SAG+ + +M + WL+ AD+A+Y AK NGR+RL Sbjct: 308 LNISAGIADYHGEMGGYLDWLKAADNALYRAKNNGRNRL 346 >gb|ADR58880.1| Diguanylate cyclase [Pseudomonas putida BIRD-1] Length = 357 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 161/357 (45%), Positives = 219/357 (61%), Gaps = 10/357 (2%) Query: 48 GKGVRFVKRIYLLRTIGLGVGFFCVAAAFVQQPVAWPLWA--LLVFHGYLWPQVARAWAL 105 GKG+ FVKRIYL R IGLG+G F V AA P++ P WA L++F+G LWP VA WA Sbjct: 6 GKGLSFVKRIYLPRVIGLGIGLFTVMAAIA--PLSPPSWAWLLVLFNGLLWPHVAYLWAA 63 Query: 106 ASRIPYRAERRNLVIDAAFGGFWIAAMQGNLVPSAVILSMLSMDNIAAGGLRLFMRGLYA 165 S PY+AE+RNL++D+ GGFW AAM N +PS +L+M++M+N+AAGG R+ RG+ A Sbjct: 64 RSTTPYQAEQRNLLLDSLMGGFWTAAMHFNPLPSVTVLAMMTMNNVAAGGKRMVFRGVLA 123 Query: 166 SIAACALGWWLLDAHWSPQSDLPTILACLPMMALYPLALGKSTYEMSKKLAERSRQFEVV 225 +A LL + + ACLPM+ALYPLALG Y+++ KL + R+ + Sbjct: 124 QLAGMLAAILLLGPGLQLTATPLQVYACLPMLALYPLALGWVCYQLAIKLGDHKRRLSAL 183 Query: 226 SQMDGLTHLFNRRYWESLLIEEFSQRRKAPGAQQKESFLLLLDLDHFKRINDTHGHLVGD 285 S D LT LFN W+ LL +F +A QQ + + L+D+DHFK INDT GH+VGD Sbjct: 184 SLTDSLTGLFNHGAWKDLLQLKF----QACKQQQGHAVIALIDIDHFKTINDTFGHVVGD 239 Query: 286 EVLRNFAQLLRIHLREEDLIGRYGGEEFVVILRNIAHADALHLSQRLVERARASQDGVNK 345 VLR + LR LRE D GRYGG+EF VIL + A A +RL ER + ++ Sbjct: 240 CVLRQLSAELRRSLREGDQAGRYGGDEFCVILPETSEAQACQAMERLRERVSSYRNPQLP 299 Query: 346 LYGCTVSAGLVPFTSDMEAHFVWLQRADHAMYCAKANGRDRL--VVWEATLVRNAEP 400 ++S GL PF +++E+ WL++AD A+Y AK GRD++ EA +R A P Sbjct: 300 HLRISLSIGLSPFEANLESPEHWLEQADKALYIAKHAGRDQVNFARGEAAALRLAYP 356 >ref|ZP_08141238.1| diguanylate cyclase [Pseudomonas sp. TJI-51] gb|EGB97480.1| diguanylate cyclase [Pseudomonas sp. TJI-51] Length = 358 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 149/341 (43%), Positives = 210/341 (61%), Gaps = 6/341 (1%) Query: 48 GKGVRFVKRIYLLRTIGLGVGFFCVAAAFV-QQPVAWPLWALLVFHGYLWPQVARAWALA 106 GKG+ FVKRIY R +G+G+G F V A Q P W +W L++F+G LWP VA WA Sbjct: 7 GKGLSFVKRIYPPRVVGMGIGLFSVMAGVAPQSPPTW-VWGLMLFNGLLWPHVAYLWASR 65 Query: 107 SRIPYRAERRNLVIDAAFGGFWIAAMQGNLVPSAVILSMLSMDNIAAGGLRLFMRGLYAS 166 S PYRAE+RNL++D+ GGFW AAM N +P+ +LSM++M+N+AAGG +L ++G A Sbjct: 66 SATPYRAEQRNLLLDSLLGGFWAAAMHFNPLPTVTVLSMMTMNNVAAGGRQLVLKGAVAQ 125 Query: 167 IAACALGWWLLDAHWSPQSDLPTILACLPMMALYPLALGKSTYEMSKKLAERSRQFEVVS 226 +A +G LL + I ACLPM+ LYPLALG Y ++ +L + R+ +S Sbjct: 126 LAGILVGTLLLAPGLQLNATALQIYACLPMLTLYPLALGWVCYRLAIQLGDHKRRLSALS 185 Query: 227 QMDGLTHLFNRRYWESLLIEEFSQRRKAPGAQQKESFLLLLDLDHFKRINDTHGHLVGDE 286 D LT L N W+ LL+ ++ + ++ Q+ + + L+D+DHFK INDT GH+VGD Sbjct: 186 LTDSLTGLLNHGAWKDLLLVKYQKCKQ----QKAHAVIALIDIDHFKTINDTFGHVVGDC 241 Query: 287 VLRNFAQLLRIHLREEDLIGRYGGEEFVVILRNIAHADALHLSQRLVERARASQDGVNKL 346 VLR + LR +LRE D GRYGG+EF VIL + A A + +RL E+ ++ Sbjct: 242 VLRQLSAELRRNLRECDQAGRYGGDEFCVILPGTSEAQACQIMERLREQVSGYRNAQLPH 301 Query: 347 YGCTVSAGLVPFTSDMEAHFVWLQRADHAMYCAKANGRDRL 387 ++S GL PF + +E+ WLQ AD A+Y AK GRDR+ Sbjct: 302 LRISLSIGLSPFNASLESPEHWLQEADKALYTAKHAGRDRV 342 >ref|NP_743316.1| diguanylate cyclase [Pseudomonas putida KT2440] gb|AAN66780.1|AE016306_6 YaiC/YhcK/ArdA family protein [Pseudomonas putida KT2440] Length = 357 Score = 283 bits (723), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 160/357 (44%), Positives = 217/357 (60%), Gaps = 10/357 (2%) Query: 48 GKGVRFVKRIYLLRTIGLGVGFFCVAAAFVQQPVAWPLWA--LLVFHGYLWPQVARAWAL 105 GKG+ FVKRIYL R IGLG+G F V AA P++ P WA L++F+G LWP VA WA Sbjct: 6 GKGLSFVKRIYLPRVIGLGIGLFTVMAAIA--PLSPPSWAWLLVLFNGLLWPHVAYLWAA 63 Query: 106 ASRIPYRAERRNLVIDAAFGGFWIAAMQGNLVPSAVILSMLSMDNIAAGGLRLFMRGLYA 165 S PY+AE+RNL++D+ GGFW AAM N +PS +L+M++M+N+AAGG R+ RG+ A Sbjct: 64 RSTTPYQAEQRNLLLDSLMGGFWTAAMHFNPLPSVTVLAMMTMNNVAAGGKRMVFRGVLA 123 Query: 166 SIAACALGWWLLDAHWSPQSDLPTILACLPMMALYPLALGKSTYEMSKKLAERSRQFEVV 225 +A LL + + ACLPM+ LYPLALG Y+++ KL + R+ + Sbjct: 124 QLAGILAAILLLGPGLQLTATPLQVYACLPMLGLYPLALGWVCYQLAIKLGDHKRRLSAL 183 Query: 226 SQMDGLTHLFNRRYWESLLIEEFSQRRKAPGAQQKESFLLLLDLDHFKRINDTHGHLVGD 285 S D LT LFN W+ LL +F +A QQ + + L+D+DHFK INDT GH+VGD Sbjct: 184 SLTDSLTGLFNHGAWKDLLQLKF----QACKQQQGHAVIALIDIDHFKTINDTFGHVVGD 239 Query: 286 EVLRNFAQLLRIHLREEDLIGRYGGEEFVVILRNIAHADALHLSQRLVERARASQDGVNK 345 VLR + LR LRE D GRYGG+EF VIL + A A +RL ER + ++ Sbjct: 240 CVLRQLSAELRRSLREGDQAGRYGGDEFCVILPETSEAQACQAMERLRERVSSYRNPQLP 299 Query: 346 LYGCTVSAGLVPFTSDMEAHFVWLQRADHAMYCAKANGRDRL--VVWEATLVRNAEP 400 ++S GL PF + +E+ WL++AD A+Y AK GRD++ EA +R A P Sbjct: 300 HLRISLSIGLSPFQASLESPEHWLEQADKALYIAKHAGRDQVNFARGEAATLRLAYP 356