BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0027.p         (154 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774880.1| hypothetical protein Hsero_1456 [Herbaspiril...   129   1e-28

>ref|YP_003774880.1| hypothetical protein Hsero_1456 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62972.1| hypothetical protein Hsero_1456 [Herbaspirillum seropedicae SmR1]
          Length = 157

 Score =  129 bits (324), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/148 (44%), Positives = 100/148 (67%), Gaps = 1/148 (0%)

Query: 1   MSTLNVVPDSPAATPHLAKARYLIVAGWVLFMISLGLPLQNNDLGYVALLYSFVFLTSIV 60
           ++ L V P  P   PHL  AR +IVAGW LFM+SL LP+  ++ G +A +YS +    + 
Sbjct: 5   LADLIVNPAKPDTAPHLKVARRVIVAGWGLFMLSLVLPVLGDEPGALAFIYSLMMPFFLF 64

Query: 61  ERPDPQLIWMGSYALVNIGLIASLFMTRKGRLISHPGCSLFFALAALDTFFAPLFA-KEF 119
           ++P    + M  Y++VN+ LIASLF+    +L++ P  S+FF L ALDT + P    +EF
Sbjct: 65  DKPSWLGLAMSFYSVVNLSLIASLFIALGDKLLTRPATSVFFVLVALDTMWIPFTPDQEF 124

Query: 120 SQYPAFWCWSASAILVAAGMNLARLRQQ 147
           +++PAFWCWSA+A++VA GMN+ARL+++
Sbjct: 125 ARHPAFWCWSAAAVMVAIGMNMARLKEK 152