BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0020.p (459 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776771.1| periplasmic sensor signal transduction histi... 932 0.0 ref|ZP_08274424.1| hypothetical protein IMCC9480_2943 [Oxalobact... 454 e-125 ref|YP_004752190.1| ATP-binding protein [Collimonas fungivorans ... 320 4e-85 ref|YP_545417.1| periplasmic sensor signal transduction histidin... 280 4e-73 gb|EGW62234.1| integral membrane sensor signal transduction hist... 268 1e-69 ref|YP_283657.1| sensor histidine kinase [Dechloromonas aromatic... 268 2e-69 ref|YP_284799.1| sensor histidine kinase [Dechloromonas aromatic... 267 4e-69 ref|NP_840430.1| sensory transduction histidine kinase [Nitrosom... 266 7e-69 ref|ZP_08403022.1| putative transmembrane sensor histidine kinas... 265 2e-68 ref|YP_582619.1| putative sensory histidine kinase in two-compon... 262 1e-67 >ref|YP_003776771.1| periplasmic sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ64863.1| periplasmic sensor signal transduction histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 459 Score = 932 bits (2409), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/459 (99%), Positives = 458/459 (99%) Query: 1 MTATHSSIRRDLLKWLIAPLLLVNLIGAGLTYWLAWLPAQHAFDQNLMDSTWGLYAQVRH 60 MTA HSSIRRDLLKWLIAPLLLVNLIGAGLTYWLAWLPAQHAFDQNLMDSTWGLYAQVRH Sbjct: 1 MTAMHSSIRRDLLKWLIAPLLLVNLIGAGLTYWLAWLPAQHAFDQNLMDSTWGLYAQVRH 60 Query: 61 RQERTTAELTQQAEQILRSNHSDTTFFAVRNSEGQIVVGDKGFPQLPASDVFDRPINYDG 120 RQERTTAELTQQAEQILRSNHSDTTFFAVRN+EGQIVVGDKGFPQLPASDVFDRPINYDG Sbjct: 61 RQERTTAELTQQAEQILRSNHSDTTFFAVRNTEGQIVVGDKGFPQLPASDVFDRPINYDG 120 Query: 121 EMRGEPVRIAAMQVRVKNGVIWVAVAETIRKRDRAHYTILLSFLVLDGALTFASIFVVLV 180 EMRGEPVRIAAMQVRVKNGVIWVAVAETIRKRDRAHYTILLSFLVLDGALTFASIFVVLV Sbjct: 121 EMRGEPVRIAAMQVRVKNGVIWVAVAETIRKRDRAHYTILLSFLVLDGALTFASIFVVLV 180 Query: 181 AVRRGLRPLKSLQRNLEQRDHGKLGAIDGRGAPVELQPLIVAMNELMARINKGEQAQQNF 240 AVRRGLRPLKSLQRNLEQRDHGKLGAIDGRGAPVELQPLIVAMNELMARINKGEQAQQNF Sbjct: 181 AVRRGLRPLKSLQRNLEQRDHGKLGAIDGRGAPVELQPLIVAMNELMARINKGEQAQQNF 240 Query: 241 MADVAHQLRTPLTGLKLQLELLHDKHQDQPDTARSLAMMNSSVERMIRQSRQLLALARSE 300 MADVAHQLRTPLTGLKLQLELLHDKHQDQPDTARSLAMMNSSVERMIRQSRQLLALARSE Sbjct: 241 MADVAHQLRTPLTGLKLQLELLHDKHQDQPDTARSLAMMNSSVERMIRQSRQLLALARSE 300 Query: 301 PGLFESRKLEELSLDKLVEESVQHFIEEADKKRIDLGFDLQPARLRGDRFLLSDLIDNLI 360 PGLFESRKLEELSLDKLVEESVQHFIEEADKKRIDLGFDL+PARLRGDRFLLSDLIDNLI Sbjct: 301 PGLFESRKLEELSLDKLVEESVQHFIEEADKKRIDLGFDLRPARLRGDRFLLSDLIDNLI 360 Query: 361 DNAVRYSPPHGTVTVRCLEEQDATVLSVEDSGPGIAPEHRELIFDRFYRANDKVAGSGLG 420 DNAVRYSPPHGTVTVRCLEEQDATVLSVEDSGPGIAPEHRELIFDRFYRANDKVAGSGLG Sbjct: 361 DNAVRYSPPHGTVTVRCLEEQDATVLSVEDSGPGIAPEHRELIFDRFYRANDKVAGSGLG 420 Query: 421 LAIVREIAHDHGGVISVDCKEQGQGTIFTVRFPLAPPAA 459 LAIVREIAHDHGGVISVDCKEQGQGTIFTVRFPLAPPAA Sbjct: 421 LAIVREIAHDHGGVISVDCKEQGQGTIFTVRFPLAPPAA 459 >ref|ZP_08274424.1| hypothetical protein IMCC9480_2943 [Oxalobacteraceae bacterium IMCC9480] gb|EGF32108.1| hypothetical protein IMCC9480_2943 [Oxalobacteraceae bacterium IMCC9480] Length = 452 Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust. Identities = 234/447 (52%), Positives = 303/447 (67%) Query: 7 SIRRDLLKWLIAPLLLVNLIGAGLTYWLAWLPAQHAFDQNLMDSTWGLYAQVRHRQERTT 66 SIR +LLKWLIAPLL +NLIGA LTY LAW+PAQ AFDQ+L D+ W L ++R Sbjct: 4 SIRINLLKWLIAPLLAINLIGAALTYRLAWVPAQMAFDQSLADAAWALVPRLRDNDGTIL 63 Query: 67 AELTQQAEQILRSNHSDTTFFAVRNSEGQIVVGDKGFPQLPASDVFDRPINYDGEMRGEP 126 +L QQAEQ+LR +H D +F VR+ GQ+V GDK FP LPA + P+ Y G MRGE Sbjct: 64 VDLPQQAEQVLRLDHVDEIYFIVRDQAGQVVAGDKDFPSLPAPQKLNDPVAYSGTMRGEA 123 Query: 127 VRIAAMQVRVKNGVIWVAVAETIRKRDRAHYTILLSFLVLDGALTFASIFVVLVAVRRGL 186 +R+ ++ RV V+ ++V+ET+RKR I VL+G LT SI +V +AV RGL Sbjct: 124 IRMIVLKARVGTQVVSISVSETLRKRSLIRTEIFAGLFVLEGLLTAISIALVWLAVTRGL 183 Query: 187 RPLKSLQRNLEQRDHGKLGAIDGRGAPVELQPLIVAMNELMARINKGEQAQQNFMADVAH 246 PLK +Q +L+ R H L + P EL+PL+ A+N L+ ++ G AQQ F+A+VAH Sbjct: 184 LPLKKMQADLDARSHDTLAPVSDVHLPRELRPLVDAINTLLGKVQAGAAAQQAFLANVAH 243 Query: 247 QLRTPLTGLKLQLELLHDKHQDQPDTARSLAMMNSSVERMIRQSRQLLALARSEPGLFES 306 QLRTPL L++QLE L +H +TA S +M ++ RMIR + QLLALAR+EP E Sbjct: 244 QLRTPLAALQMQLEWLQQRHPQGHETAHSATLMLTATARMIRHTNQLLALARAEPSRLEK 303 Query: 307 RKLEELSLDKLVEESVQHFIEEADKKRIDLGFDLQPARLRGDRFLLSDLIDNLIDNAVRY 366 + EE+ L L+E++VQ F+E+A +K+IDLGFDLQPA LR D FLL DLIDNLIDNA+RY Sbjct: 304 DRFEEVDLCHLIEDAVQVFVEQAVRKQIDLGFDLQPAPLRADPFLLRDLIDNLIDNAIRY 363 Query: 367 SPPHGTVTVRCLEEQDATVLSVEDSGPGIAPEHRELIFDRFYRANDKVAGSGLGLAIVRE 426 SP TVTV C E++A + VEDSGPGIA RELIF+RFYR ++ VAGSGLGLAIVR+ Sbjct: 364 SPAGSTVTVSCRCEEEAVLFLVEDSGPGIAESRRELIFNRFYRLDESVAGSGLGLAIVRD 423 Query: 427 IAHDHGGVISVDCKEQGQGTIFTVRFP 453 I H + + G+GT F+VRFP Sbjct: 424 IVLAHDAEMQLGAGPGGKGTTFSVRFP 450 >ref|YP_004752190.1| ATP-binding protein [Collimonas fungivorans Ter331] gb|AEK61367.1| ATP-binding region, ATPase-like:Histidine kinase [Collimonas fungivorans Ter331] Length = 349 Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 164/333 (49%), Positives = 217/333 (65%), Gaps = 24/333 (7%) Query: 122 MRGEPVRIAAMQVRVKNGVIWVAVAETIRKRDRAHYTILLSFLVLDGALTFASIFVVLVA 181 + G P RIA Q + G++W+ + V+ +A Sbjct: 30 LAGSPGRIAFDQTSILTGLVWLEAGLAL-----------------------LLAIVIWLA 66 Query: 182 VRRGLRPLKSLQRNLEQRDHGKLGAIDGRGAPVELQPLIVAMNELMARINKGEQAQQNFM 241 + RGL PLK + +LE R L A+D R P+EL P++ A+N L+ ++ + +AQQNF+ Sbjct: 67 LGRGLLPLKKMTADLEARSDDDLSALDQRHVPLELSPVVTAINRLLDKVQQDAKAQQNFL 126 Query: 242 ADVAHQLRTPLTGLKLQLELLHDKHQDQPDTARSLAMMNSSVERMIRQSRQLLALARSEP 301 A++AHQLRTPL G + QLE L KH +P++A S+A+M SS ERMIRQ+ QLL LAR+EP Sbjct: 127 ANMAHQLRTPLAGFRTQLEWLRQKHAGEPESAHSIALMTSSTERMIRQTNQLLTLARAEP 186 Query: 302 GLFESRKLEELSLDKLVEESVQHFIEEADKKRIDLGFDLQPARLRGDRFLLSDLIDNLID 361 FE +L + L++LVEES+QHF+E+A +K IDLGF+LQP R+ GD FLL DLIDNLID Sbjct: 187 AKFEKERLRVVELNRLVEESIQHFVEQAHRKNIDLGFNLQPTRVMGDHFLLRDLIDNLID 246 Query: 362 NAVRYSPPHGTVTVRCLEEQDATVLSVEDSGPGIAPEHRELIFDRFYRANDKVAGSGLGL 421 NA+RYSP G VTV L +D + SVEDSGPGI P +ELIF+RF R +D VAG+GLGL Sbjct: 247 NAIRYSPQGGKVTVSSLHGKDGGIFSVEDSGPGIKPSEQELIFNRFRRLDDSVAGNGLGL 306 Query: 422 AIVREIAHDHGGVISVDCKEQGQGTIFTVRFPL 454 AIVR+IA DHG I V+ G GT+F+V FP Sbjct: 307 AIVRDIAKDHGARIMVEPATAG-GTVFSVLFPF 338 >ref|YP_545417.1| periplasmic sensor signal transduction histidine kinase [Methylobacillus flagellatus KT] gb|ABE49576.1| periplasmic sensor signal transduction histidine kinase [Methylobacillus flagellatus KT] Length = 452 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 161/439 (36%), Positives = 255/439 (58%), Gaps = 13/439 (2%) Query: 22 LVNLIGAGLT--YWLAWLPAQHAFDQNLMDSTWGLYAQVRHRQERTTAELTQQAEQILRS 79 L L+ G+ Y++A PA+ +DQ+L+ + L + Q +LRS Sbjct: 19 LTALVAVGILTDYFMALEPAREVYDQHLLKLAYNLERSLPDDPGEWHGAYPQIERSLLRS 78 Query: 80 --NHSDTTFFAVRNSEGQIVVGDKGFP-QLPASDVFDRPINYDGEMRGEPVRIAAMQVRV 136 ++ D A+ + +GQ + G P QLP++D +P YD E +G+P+R+ A++ V Sbjct: 79 EQDNYDAAKAAIFDLQGQFLAGVADLPIQLPSAD--HKPYFYDAEYQGDPIRVVAIKSPV 136 Query: 137 KNGVIWVAVAETIRKRDRAHYTILLSFLVLDGALTFASIFVVLVAVRRGLRPLKSLQRNL 196 + V+++A ET KR+R L+ +V + SI V+ V V RGL+PL ++ + Sbjct: 137 LDAVLYLA--ETTYKRNRLVQKTLIHMIVPELVFAVFSIVVLWVGVGRGLQPLAQIRAQI 194 Query: 197 EQRDHGKLGAIDGRGAPVELQPLIVAMNELMARINKGEQAQQNFMADVAHQLRTPLTGLK 256 R L +D APVE++ +IVA+N L+AR+++ + Q F+A+ AHQLRTPL GL+ Sbjct: 195 NARSETDLSPMDEGKAPVEVREIIVALNSLLARLDRSLKLQNQFLANAAHQLRTPLAGLQ 254 Query: 257 LQLELLHDKHQDQPDTARSLAMMNSSVERMIRQSRQLLALARSEPGLFESRKLEELSLDK 316 +QLEL + Q + +S M S R++R + QLLALAR+E G E K EL + Sbjct: 255 MQLELASE--QSPEERMQSHERMLVSTRRIVRLANQLLALARAE-GEGEVNKFAELDISN 311 Query: 317 LVEESVQHFIEEADKKRIDLGFDLQPARLRGDRFLLSDLIDNLIDNAVRYSPPHGTVTVR 376 +E ++ AD K IDLGFDL PA++ G + + +++ NL+DNA+RY+P HG +T+R Sbjct: 312 AIEAMATEWLLRADAKSIDLGFDLYPAKVSGSLWQIQEMLANLVDNALRYTPMHGNITIR 371 Query: 377 CLEEQDATVLSVEDSGPGIAPEHRELIFDRFYRANDKVAGSGLGLAIVREIAHDHGGVIS 436 C +++ V+ VED+GPGI + E +F+RFYR ++ G GLGL+IVREI HGG ++ Sbjct: 372 CKQQEQKVVIEVEDNGPGIPQDQHENVFNRFYRLDEDPEGCGLGLSIVREIVRHHGGQVT 431 Query: 437 VDCK-EQGQGTIFTVRFPL 454 + GQG + ++ P+ Sbjct: 432 LQTPVHHGQGLLVRIQLPV 450 >gb|EGW62234.1| integral membrane sensor signal transduction histidine kinase [Dechlorosoma suillum PS] Length = 511 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 174/469 (37%), Positives = 261/469 (55%), Gaps = 28/469 (5%) Query: 7 SIRRDLLKWLIAPLLLVNLIGAGLTYWLAWLPAQHAFDQNLMDSTWGLYAQVRHRQERTT 66 S+ ++L W++APLL V I +T++ A + A + +DQ L ++ + Q+R+ + Sbjct: 20 SLFGEILDWMLAPLLFVWPISIAITHYFANIVAGYPYDQALRENVNAIARQIRYSDSKPV 79 Query: 67 AELTQQAEQILRSNHSDTTFFAVRNSEGQIVVGDKGFPQLPASDVFDRP------INY-D 119 L+ A +LR++ D+ +F V EG + GDK +LP + RP I++ D Sbjct: 80 INLSGSARAVLRADEVDSVYFHVVTREGTRLAGDK---ELPVAPELVRPRDDTGEISFRD 136 Query: 120 GEMRGEPVRIA----AMQVRVKNGVIWVAVAETIRKRDRAHYTILLSFLVLDGALTFASI 175 GE G+ +RIA A R + + V V ET+ KR + I+ S ++ + ++ Sbjct: 137 GEFNGQDLRIAYQFLADPNRPDDRWLVVEVGETLEKRSQLANKIIASVILPQFVIIPLAV 196 Query: 176 FVVLVAVRRGLRPLKSLQRNLEQRDHGKLGAIDGRGAPVELQPLIVAMNELMARINKGEQ 235 +V + +GL+PL L+ +E R G L I+ R P ELQPLI A N ++ R+ + + Sbjct: 197 ILVWFGLSQGLKPLTKLRSRIEARRPGDLSPINTRKVPEELQPLIEAFNGMLERMERNME 256 Query: 236 AQQNFMADVAHQLRTPLTGLKLQLELLHDKHQDQPDTARSLAMMNSSVERMIRQSRQLLA 295 AQ F+AD AHQ+RTPLTGLK Q +L + D +L M +V+R QLL Sbjct: 257 AQTRFIADAAHQMRTPLTGLKTQAQLAM-RENDPERLLYALRQMAGAVDRASHLVNQLLT 315 Query: 296 LARSEPGL-FESRKLEELSLDKLVEESVQHFIEEADKKRIDLGFDLQPA----RLRGDRF 350 LAR+E G S+ L ++LDKL+ E V+ ++ A + ID+G+ +PA + G+ F Sbjct: 316 LARAEAGSGAASQPLAPMNLDKLLREIVEDWVMRALENYIDMGY--EPADGATEIEGNSF 373 Query: 351 LLSDLIDNLIDNAVRYSPPHGTVTVRCLEE-----QDATVLSVEDSGPGIAPEHRELIFD 405 LL ++I+NLIDNA+RY+P G VT R + + VL +EDSG GI E EL+F+ Sbjct: 374 LLREMINNLIDNALRYTPVGGQVTCRVVRRRSEGGESEVVLEIEDSGIGITEEQSELVFE 433 Query: 406 RFYRANDK-VAGSGLGLAIVREIAHDHGGVISVDCKEQGQGTIFTVRFP 453 RFYR +D GSGLGL IVREIA H S+ +GQG+I V FP Sbjct: 434 RFYRVDDAGTEGSGLGLPIVREIAELHHAQASLRPNPKGQGSIARVVFP 482 >ref|YP_283657.1| sensor histidine kinase [Dechloromonas aromatica RCB] gb|AAZ45187.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 501 Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 170/462 (36%), Positives = 254/462 (54%), Gaps = 13/462 (2%) Query: 2 TATHSSIRRDLLKWLIAPLLLVNLIGAGLTYWLAWLPAQHAFDQNLMDSTWGLYAQVRHR 61 + T S+ ++L W++APLL V + T++ A A + +DQ L + + QV+ Sbjct: 14 SETERSLFGEILDWMLAPLLFVWPLSIAFTHYFANNVANYPYDQALREHVAAIARQVKLV 73 Query: 62 QERTTAELTQQAEQILRSNHSDTTFFAVRNSEGQIVVGDKGFP--QLPASDVFDRPINY- 118 + L A +LR++ +D+ +F V +G+ + GDK P QLP D Y Sbjct: 74 NGKPQLSLPASARALLRADETDSVYFHVVTFDGRFLAGDKELPLSQLPLDDAMVSGEIYQ 133 Query: 119 -DGEMRGEPVRIAAMQVRVKN--GVIWVA--VAETIRKRDRAHYTILLSFLVLDGALTFA 173 D + +G+ +R+A + N WV V ET KR + I+ S ++ + Sbjct: 134 RDADFKGQDLRMAYTYLAEPNMPKSQWVVIEVGETTEKRSQLANKIVASVILPQFIIIPL 193 Query: 174 SIFVVLVAVRRGLRPLKSLQRNLEQRDHGKLGAIDGRGAPVELQPLIVAMNELMARINKG 233 ++ +V + RGLRPL L++ ++ R L I R P EL+PL+ A NE++ R+ + Sbjct: 194 AVMLVWFGLSRGLRPLTRLRQTIDARQPDDLSPIATRRVPEELEPLVEAFNEMLERMKRS 253 Query: 234 EQAQQNFMADVAHQLRTPLTGLKLQLELLHDKHQDQPDTAR-SLAMMNSSVERMIRQSRQ 292 +AQQ F+AD AHQLRTPLTGLK Q + + P+ R +L + + V+R R Q Sbjct: 254 VEAQQRFVADAAHQLRTPLTGLKTQAQFA--IRETDPEALRHALRQIATGVDRAGRLVNQ 311 Query: 293 LLALARSEPGLFESRKLEELSLDKLVEESVQHFIEEADKKRIDLGFDLQ-PARLRGDRFL 351 LL LAR+E G R+ E L L LV E V+ ++ A +K IDLG++ + PA + G+ FL Sbjct: 312 LLTLARTEGGELAQRRHEPLDLSLLVREVVEDWVTVAIEKDIDLGYESEGPAMISGNSFL 371 Query: 352 LSDLIDNLIDNAVRYSPPHGTVTVRCLEEQDATVLSVEDSGPGIAPEHRELIFDRFYRAN 411 L +L NLIDNA+RY+P G VT R + D +L VED+G GI+ E +L+F+RFYR + Sbjct: 372 LRELAKNLIDNALRYTPAGGRVTCRVVVNPDTVLLEVEDNGVGISEEQADLVFERFYRVD 431 Query: 412 D-KVAGSGLGLAIVREIAHDHGGVISVDCKEQGQGTIFTVRF 452 D GSGLGLAIV+EIA H S+ G+G I + F Sbjct: 432 DASTEGSGLGLAIVQEIAMQHDSRASLRPNPLGKGAIARIAF 473 >ref|YP_284799.1| sensor histidine kinase [Dechloromonas aromatica RCB] gb|AAZ46329.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 462 Score = 267 bits (682), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 157/438 (35%), Positives = 243/438 (55%), Gaps = 3/438 (0%) Query: 7 SIRRDLLKWLIAPLLLVNLIGAGLTYWLAWLPAQHAFDQNLMDSTWGLYAQVRHRQERTT 66 S+R+ L+ L+ PL+++ + Y LA A A DQ L D+ + L + ++ + T Sbjct: 15 SLRQRLILALLTPLIVILASSSIFDYQLAKKTANRAHDQALADNVFDLESHIKRQNPSPT 74 Query: 67 AELTQQAEQILRSNHSDTTFFAVRNSEGQIVVGDKGFPQLPASDVFDRPINYDGEMRGEP 126 +LT++AE +LRSN D +F+V +S G+++ GD P+ S ++ DG + + Sbjct: 75 LDLTEEAEAMLRSNAPDMLYFSVSDSSGKVLAGDTDLPKT-HSQKSEQVEFRDGIYQDKA 133 Query: 127 VRIAAMQVRVKNGVIWVAVAETIRKRDRAHYTILLSFLVLDGALTFASIFVVLVAVRRGL 186 VRIA+ + ++N + V ET KR +A IL + ++ + A+ A++ V+ VR+GL Sbjct: 134 VRIASHRANIRNREFQIVVLETTEKRQQASSRILTAMVIPNLAVILATMLAVIFGVRQGL 193 Query: 187 RPLKSLQRNLEQRDHGKLGAIDGRGAPVELQPLIVAMNELMARINKGEQAQQNFMADVAH 246 PL+ ++ ++ R L I+ G P E++P++ +NEL A + + + QQ F+AD AH Sbjct: 194 LPLREVEHDIAVRSANDLHEIELSGTPSEIRPMLHRLNELFALVRESVEVQQRFIADAAH 253 Query: 247 QLRTPLTGLKLQLELLHDKHQDQPDTARSLAMMNSSVERMIRQSRQLLALARSEPGLFES 306 QLRTPL GL+ QL+L + + R L ++ S R+ QLL AR+E Sbjct: 254 QLRTPLAGLQTQLDLATSEGAFSNNVER-LQLIEESTARIGHLLTQLLTYARAETSNAIK 312 Query: 307 RKLEELSLDKLVEESVQHFIEEADKKRIDLGFDLQPARLRGDRFLLSDLIDNLIDNAVRY 366 E + L+ L E S F++ A K IDLGF++ P G ++L + + NLIDNA+RY Sbjct: 313 ANFEPVQLNLLAENSASIFLDAALAKNIDLGFEISPTTTLGFPWMLQEALSNLIDNAIRY 372 Query: 367 SPPHGTVTVRCLEEQDATVLSVEDSGPGIAPEHRELIFDRFYRANDKVA-GSGLGLAIVR 425 +PP G +TVR + VEDSGPGI EH + +F+RFYR G GLGLAIV Sbjct: 373 TPPGGIITVRSSSADKQACIEVEDSGPGIPDEHLKHVFERFYRIPGSPGHGCGLGLAIVS 432 Query: 426 EIAHDHGGVISVDCKEQG 443 EI HG I ++ QG Sbjct: 433 EIVQLHGARIDLEKSPQG 450 >ref|NP_840430.1| sensory transduction histidine kinase [Nitrosomonas europaea ATCC 19718] emb|CAD84254.1| Sensory transduction histidine kinases [Nitrosomonas europaea ATCC 19718] Length = 461 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 155/423 (36%), Positives = 235/423 (55%), Gaps = 4/423 (0%) Query: 32 YWLAWLPAQHAFDQNLMDSTWGLYAQVRHRQERTTAELTQQAEQILRSNHSDTTFFAVRN 91 Y LA A A+D +L ++ + A ++ LT +AE +LR + D FFAVR+ Sbjct: 35 YRLAQETADTAYDHSLNNAALDIAAYIQTVGLSPKLRLTPEAEAMLRHDAVDKIFFAVRD 94 Query: 92 SEGQIVVGDKGFPQLPASDVFDRPINYDGEMRGEPVRIAAMQVRVKNGVIWVAVAETIRK 151 S Q+++GD P P + + RP+ D +GE +R + V I + VAET+R+ Sbjct: 95 SNKQLLIGDAQLPAYPGA-IHKRPVFIDDVYQGEKIRATTQLIMVDANEITITVAETMRE 153 Query: 152 RDRAHYTILLSFLVLDGALTFASIFVVLVAVRRGLRPLKSLQRNLEQRDHGKLGAIDGRG 211 R+ A IL + ++ + + A++ V+ VRRGL PL ++ + R L A+D Sbjct: 154 REHASNRILAATIIPNLIIIAATLLVIYFGVRRGLAPLVHVENQIASRSPRDLRALDIGH 213 Query: 212 APVELQPLIVAMNELMARINKGEQAQQNFMADVAHQLRTPLTGLKLQLELLHDKHQDQPD 271 AP E++P++ +NEL + AQQ F+AD AHQLRTPL GL+ Q+EL+ + + + Sbjct: 214 APREIRPMLTRLNELFESLRTAAAAQQRFLADAAHQLRTPLAGLQTQIELVAAEGKYVRN 273 Query: 272 TARSLAMMNSSVERMIRQSRQLLALARSEPGLFESRKLEELSLDKLVEESVQHFIEEADK 331 R LA + + ER+ QLL A++EP ++ ++L +L E + FI+ A Sbjct: 274 DER-LARIEEAAERIAHLVTQLLIYAQTEPAASANQTFHPVALHELAESAASTFIDRALA 332 Query: 332 KRIDLGFDLQPARLRGDRFLLSDLIDNLIDNAVRYSPPHGTVTVRCLEEQDATVLSVEDS 391 K IDLGF++QPA G ++L + + NLIDNA+RY P T+TVR L+VED+ Sbjct: 333 KDIDLGFEIQPAVAEGIAWMLREALGNLIDNALRYCPAGSTITVRSGVHSSRPCLAVEDN 392 Query: 392 GPGIAPEHRELIFDRFYRANDKVA-GSGLGLAIVREIAHDHGGVISVDCKEQGQGTIFTV 450 GPGI PE + +F+RFYR ++ G GLGL IV+EIAH H I+ + G T+ Sbjct: 393 GPGIPPEEHKKVFERFYRIPGSISGGCGLGLPIVQEIAHLHAATITFS-RPANSGLTVTL 451 Query: 451 RFP 453 FP Sbjct: 452 TFP 454 >ref|ZP_08403022.1| putative transmembrane sensor histidine kinase transcription regulator protein [Rubrivivax benzoatilyticus JA2] gb|EGJ11355.1| putative transmembrane sensor histidine kinase transcription regulator protein [Rubrivivax benzoatilyticus JA2] Length = 490 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 180/481 (37%), Positives = 261/481 (54%), Gaps = 39/481 (8%) Query: 7 SIRRDLLKWLIAPLLLVNLIGAGLTYWLAWLPAQHAFDQNLMDSTWGLYAQVRHRQERTT 66 S+ ++L W++APLLL+ + LT+ +A A +D+ L G+ +V RQ Sbjct: 8 SLFGEILDWMLAPLLLLWPMSVALTWLVAQNIANRPYDREL-----GVMVRVIARQAAAE 62 Query: 67 AE------------LTQQAEQILRSNHSDTTFFAVRNSEGQIVVGDKGFPQLPASDVFDR 114 E L Q A Q+LR + +D+ FF VR + G++V GD P Sbjct: 63 HEMPARASDAARRSLEQAATQLLRPDDNDSLFFQVRGARGELVAGDADLPVPSDGPPTVE 122 Query: 115 PINYDGEMRGEPVRIAAMQVRVKNG--VIWVAVAETIRKRDRAHYTILLSFLVLDGALTF 172 P D +R EPVR+A + G + +AET+ KR R I+ ++ + Sbjct: 123 PRFRDDVIRDEPVRVAYLWTGDDAGGNAGLIQIAETVDKRSRLATEIIKGVILPQFVILP 182 Query: 173 ASIFVVLVAVRRGLRPLKSLQRNLEQRDHGKLGAIDGRGAPVELQPLIVAMNELMARINK 232 ++ +V +A+ RG+RPL LQ+ + QRD L I+ R P E+ PL+ A+N+L+ R+++ Sbjct: 183 VAVLLVWLALARGIRPLSDLQQRIRQRDSTDLSPIEDRHVPEEVAPLVGAINDLLGRLDQ 242 Query: 233 GEQAQQNFMADVAHQLRTPLTGLKLQLEL----LHDKHQDQPDTARSLAMMNSSVERMIR 288 AQ++F+AD AHQL+TPL GL+ Q EL L D SL + S +R Sbjct: 243 SIAAQRHFLADAAHQLKTPLAGLRTQAELAERELDFGRGDTQSMKHSLQQIALSSQRAAH 302 Query: 289 QSRQLLALARSEPGLFESRKLEELSLDKLVEESVQHFIEEADKKRIDLGF-----DLQPA 343 QLL++AR+E RK +++ L V E+V+ F+ +A +K IDLG+ D + A Sbjct: 303 MVNQLLSMARAEDKEQALRK-QDVDLAATVVETVRDFVPKAMEKHIDLGYEGPDPDSRDA 361 Query: 344 RLRGDRFLLSDLIDNLIDNAVRYSPPHGTVTVRCLEEQ--DATVLSVEDSGPGIAPEHRE 401 RL G L+ +++ NL+DNA++Y+P GTVT R + + VL VED+GPGIAP RE Sbjct: 362 RLWGQPVLVREMVRNLVDNALQYTPAGGTVTARVMPDPFGQVLVLQVEDTGPGIAPAERE 421 Query: 402 LIFDRFYRA-NDKVAGSGLGLAIVREIAHDHGGVISVDCKE-------QGQGTIFTVRFP 453 LIF FYRA V GSGLGLAIV+EIA+ HG I V E G +FTVRFP Sbjct: 422 LIFQPFYRALGTDVDGSGLGLAIVQEIANVHGAEIGVTDAELRPGSAHGTPGAVFTVRFP 481 Query: 454 L 454 L Sbjct: 482 L 482 >ref|YP_582619.1| putative sensory histidine kinase in two-component regulatory system [Cupriavidus metallidurans CH34] gb|ABF07350.1| putative sensory histidine kinase in two-component regulatory system with Rmet_0465 [Cupriavidus metallidurans CH34] Length = 524 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 172/480 (35%), Positives = 259/480 (53%), Gaps = 31/480 (6%) Query: 2 TATHSSIRR---DLLKWLIAPLLLVNLIGAGLTYWLAWLPAQHAFDQNLMDSTWGLYAQV 58 T+ H + R ++L W++APLLL+ + +TY +A A FD+ L S L QV Sbjct: 47 TSAHPAPRSLFGEILDWMLAPLLLLWPMSIAVTYLVAKSIANGPFDRALEASAIVLSQQV 106 Query: 59 RHRQERTTAELTQQAEQILRSNHSDTTFFAVRNSEGQIVVGDKGFPQLPASD-------V 111 R R T +L A +ILR++ +D ++ V G+ V GD P LP+ D V Sbjct: 107 REVNGRVTLQLPLSAREILRADETDNIYYQVVGKHGEYVAGDHDLP-LPSEDEEGHAGLV 165 Query: 112 FDRPINYDGEMRGEPVRIAAMQVRVKN----GVIWVAVAETIRKRDRAHYTILLSFLVLD 167 R D + G VR+A V +KN + V VAET+ KR R I+ ++ Sbjct: 166 SLR----DDRVAGNDVRVAYTYVELKNISGAQPVLVQVAETLDKRARLANEIIKGVILPQ 221 Query: 168 GALTFASIFVVLVAVRRGLRPLKSLQRNLEQRDHGKLGAIDGRGAPVELQPLIVAMNELM 227 + ++ +V + RGL PL ++Q+ + R+ G ID R AP E+ PL+ + N+L+ Sbjct: 222 FVILPLAVVLVWFGLTRGLAPLTAIQQRIRARNPGDTSPIDERAAPQEITPLVASFNDLL 281 Query: 228 ARINKGEQAQQNFMADVAHQLRTPLTGLKLQLELLHDKHQDQPDTARSLAMMNSSVERMI 287 +++ + Q Q+ F+AD AHQ++TPL GL++Q EL + Q + RSLA + S +R Sbjct: 282 SQLEQSVQTQKRFIADAAHQMKTPLAGLRMQAELAQ-REQSPEELHRSLAQIAGSSKRTA 340 Query: 288 RQSRQLLALARSEPGLFESRKLEELSLDKLVEESVQHFIEEADKKRIDLGF--DLQPARL 345 QLL+LAR E L + ++L L + V+ + +A ++IDLG D P + Sbjct: 341 HLVTQLLSLARME-NLAGVGGMTPVNLTALARDVVKDLLPQAWARQIDLGLEGDEHPVMV 399 Query: 346 RGDRFLLSDLIDNLIDNAVRYSPPHGTVTVRCLEE--QDATVLSVEDSGPGIAPEHRELI 403 G+R +L+++++NL+DNA+RY+PP G TVR + + + L VED+GPGI P R + Sbjct: 400 TGNRVMLTEMLNNLVDNAIRYTPPGGHATVRVIADAFEPFAYLDVEDTGPGIPPSERGRV 459 Query: 404 FDRFYRA-NDKVAGSGLGLAIVREIAHDHGGVISVD-----CKEQGQGTIFTVRFPLAPP 457 +RFYR GSGLGLAIVREI HGG IS+D + + G F V APP Sbjct: 460 MERFYRVLGTNTEGSGLGLAIVREIVQQHGGEISIDDNVYQTEPRLAGARFHVTLRRAPP 519