BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0019.p (217 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776772.1| two component response regulator protein [He... 437 e-121 ref|YP_004752189.1| response regulators consisting of a CheY-lik... 323 1e-86 ref|ZP_08274423.1| response regulator transcription regulatory p... 303 8e-81 ref|YP_001022357.1| two component transcriptional regulator [Met... 213 1e-53 ref|ZP_08506624.1| Transcriptional regulatory protein TctD [Meth... 211 8e-53 ref|YP_003673414.1| winged helix family two component transcript... 209 2e-52 ref|YP_932479.1| two-component response regulatory protein [Azoa... 209 3e-52 ref|YP_002355076.1| winged helix family two component transcript... 207 9e-52 ref|YP_157648.1| two-component response regulatory protein [Arom... 206 2e-51 ref|YP_001057860.1| DNA-binding response regulator [Burkholderia... 204 7e-51 >ref|YP_003776772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64864.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 220 Score = 437 bits (1124), Expect = e-121, Method: Compositional matrix adjust. Identities = 217/217 (100%), Positives = 217/217 (100%) Query: 1 LLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALSQRFNAAVLVLDIGLPGIDGFEVLRR 60 LLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALSQRFNAAVLVLDIGLPGIDGFEVLRR Sbjct: 4 LLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALSQRFNAAVLVLDIGLPGIDGFEVLRR 63 Query: 61 MRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAPQPAQ 120 MRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAPQPAQ Sbjct: 64 MRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAPQPAQ 123 Query: 121 LTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWGEDFT 180 LTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWGEDFT Sbjct: 124 LTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWGEDFT 183 Query: 181 INAVEVYVSRIRLKIADSGVAIRTIRGFGYMLEKSEA 217 INAVEVYVSRIRLKIADSGVAIRTIRGFGYMLEKSEA Sbjct: 184 INAVEVYVSRIRLKIADSGVAIRTIRGFGYMLEKSEA 220 >ref|YP_004752189.1| response regulators consisting of a CheY-like receiver domain-containing protein and a winged-helix DNA-binding domain-containing protein [Collimonas fungivorans Ter331] gb|AEK61366.1| Response regulators consisting of a CheY-like receiver domain protein and a winged-helix DNA-binding domain protein [Collimonas fungivorans Ter331] Length = 222 Score = 323 bits (827), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 154/219 (70%), Positives = 188/219 (85%), Gaps = 2/219 (0%) Query: 1 LLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDA--LSQRFNAAVLVLDIGLPGIDGFEVL 58 LLVEDD VL DG+ R+ HG V V NGNDA L QR +V+VLDIGLPG+DGFEV+ Sbjct: 4 LLVEDDSVLADGILRIFKGHGMVVDVVRNGNDADALLQRTEISVVVLDIGLPGMDGFEVI 63 Query: 59 RRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAPQP 118 RR+RA G++ PVLLLTARD++ DRV+GLELGADDYLVKPFAT ELVAR++AL+RRSAPQP Sbjct: 64 RRLRARGSHIPVLLLTARDSVQDRVYGLELGADDYLVKPFATQELVARVRALLRRSAPQP 123 Query: 119 AQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWGED 178 ++ +GGLSL+ +++RA I+G+ IELS+REW VLEYL+Q ASRVVS+QQIIDA+LPWG + Sbjct: 124 LEMHLGGLSLNTSSRRAKINGKAIELSVREWAVLEYLLQQASRVVSRQQIIDAILPWGAE 183 Query: 179 FTINAVEVYVSRIRLKIADSGVAIRTIRGFGYMLEKSEA 217 T+NAVEVY+SRIRLKIAD+G+ IRTIRGFGYMLEK+EA Sbjct: 184 LTLNAVEVYISRIRLKIADAGIEIRTIRGFGYMLEKTEA 222 >ref|ZP_08274423.1| response regulator transcription regulatory protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF32107.1| response regulator transcription regulatory protein [Oxalobacteraceae bacterium IMCC9480] Length = 222 Score = 303 bits (777), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 151/215 (70%), Positives = 173/215 (80%), Gaps = 2/215 (0%) Query: 1 LLVEDDPVLTDGLSRVLNSHGFTVHTVNNGN--DALSQRFNAAVLVLDIGLPGIDGFEVL 58 LL EDD VL DG++R L SHG V V+NG+ + + AVLVLDIGLPGIDGFEV+ Sbjct: 4 LLAEDDSVLADGIARALRSHGMVVDVVDNGSAVELAIKHAEIAVLVLDIGLPGIDGFEVV 63 Query: 59 RRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAPQP 118 RR+R G PVLLLTARD I DRVHG ELGADDYLVKPF+T ELVAR+KAL+RRSAP+P Sbjct: 64 RRLRLHGMQVPVLLLTARDAIQDRVHGFELGADDYLVKPFSTLELVARLKALVRRSAPKP 123 Query: 119 AQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWGED 178 +L++GGL+LD +RA I R IE S+REW VLEYLMQ ASRVVSKQQIIDA+LPWGED Sbjct: 124 IELSIGGLTLDTFARRAHIGTRSIEFSVREWAVLEYLMQQASRVVSKQQIIDAILPWGED 183 Query: 179 FTINAVEVYVSRIRLKIADSGVAIRTIRGFGYMLE 213 T+NAVEVYVSRIRLKIA S + IRTIRGFGY+LE Sbjct: 184 LTLNAVEVYVSRIRLKIAPSNIVIRTIRGFGYLLE 218 >ref|YP_001022357.1| two component transcriptional regulator [Methylibium petroleiphilum PM1] gb|ABM96122.1| two component transcriptional regulator, winged helix family [Methylibium petroleiphilum PM1] Length = 266 Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 115/217 (52%), Positives = 148/217 (68%), Gaps = 3/217 (1%) Query: 1 LLVEDDPVLTDGLSRVLNSHGFTV-HTVNNGNDALSQRFNAA-VLVLDIGLPGIDGFEVL 58 LL EDDP L + +R L S G+ V HT S + + +L+LDIGL GIDGFE L Sbjct: 41 LLAEDDPALAESTARALRSQGWVVDHTPRGEPVPTSVKTDPYDLLILDIGLIGIDGFETL 100 Query: 59 RRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRR-SAPQ 117 RR+R G+ PVL+LTARD I DRVHGLE+GADDYLVKPFA EL+AR+K L RR A Q Sbjct: 101 RRVREQGSTLPVLMLTARDAIEDRVHGLEMGADDYLVKPFALAELIARVKVLTRRHQARQ 160 Query: 118 PAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWGE 177 + L++GGL +D RA I + ++LS REW VLEYL+ VV K+QI+ A+ W + Sbjct: 161 GSVLSMGGLRMDLEANRAWIGEQPLDLSAREWAVLEYLLSRVGHVVGKEQILQAISGWDD 220 Query: 178 DFTINAVEVYVSRIRLKIADSGVAIRTIRGFGYMLEK 214 + NAVEVYVSR+R KI +G+ IR +RGFGY++E+ Sbjct: 221 ALSENAVEVYVSRLRPKIEPAGLRIRAVRGFGYLVEE 257 >ref|ZP_08506624.1| Transcriptional regulatory protein TctD [Methyloversatilis universalis FAM5] gb|EGK69751.1| Transcriptional regulatory protein TctD [Methyloversatilis universalis FAM5] Length = 224 Score = 211 bits (536), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 108/221 (48%), Positives = 149/221 (67%), Gaps = 6/221 (2%) Query: 1 LLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDA----LSQRFNAAVLVLDIGLPGIDGFE 56 LL EDDPV++D + R L G+ V +V +G +A Q F+ A++ DIGLP + G E Sbjct: 4 LLAEDDPVISDAVVRALRRAGYAVDSVASGGEADAALHGQSFDLAII--DIGLPKLSGIE 61 Query: 57 VLRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAP 116 V++RMRA TPVL+LTA+D I DRV GL+ GADDY+ KPFA PEL AR++AL RR Sbjct: 62 VIKRMRARKCATPVLILTAQDGIDDRVRGLDAGADDYMCKPFALPELEARVRALTRRGTG 121 Query: 117 QPAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWG 176 P ++ VG L+ D A ++G+ IELS RE +LE L+ A R+V+K+Q++D + WG Sbjct: 122 MPTRIEVGALAYDQTDHVASVNGQPIELSARETALLEVLLLRAGRLVNKEQLVDHLCGWG 181 Query: 177 EDFTINAVEVYVSRIRLKIADSGVAIRTIRGFGYMLEKSEA 217 E+ + NA+EVYV R+R KI SG+ I T+RG GY LE+ +A Sbjct: 182 EEVSNNAIEVYVHRLRKKIEHSGLRIVTLRGLGYCLERPDA 222 >ref|YP_003673414.1| winged helix family two component transcriptional regulator [Methylotenera versatilis 301] gb|ADI28837.1| two component transcriptional regulator, winged helix family [Methylotenera versatilis 301] Length = 227 Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 107/218 (49%), Positives = 152/218 (69%), Gaps = 3/218 (1%) Query: 1 LLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALSQ--RFNAAVLVLDIGLPGIDGFEVL 58 LLVEDD L + +R L S + V V NG+ ++ + ++LD+GLPG+DGFE+L Sbjct: 4 LLVEDDTHLGESTARALRSQQWFVDWVRNGDSVINMIGLVSYDAIILDVGLPGMDGFEIL 63 Query: 59 RRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRR-SAPQ 117 +R+ N+ PVL+LTARDTI DRV+G +LGADDYLVKPFA ELVARI+A+ RR Q Sbjct: 64 HSLRSQNNSLPVLMLTARDTIDDRVYGFQLGADDYLVKPFALKELVARIQAITRRFHTRQ 123 Query: 118 PAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWGE 177 ++ G L +D KRA + + +EL REW VL Y++ + +VVSK+QI++A+ W E Sbjct: 124 HNEIIFGILRIDLTAKRAYLSDKSLELLPREWAVLVYILNNLGKVVSKEQILEAISDWDE 183 Query: 178 DFTINAVEVYVSRIRLKIADSGVAIRTIRGFGYMLEKS 215 + NA+EVY+SR+R K+ +G++IRTIRGFGY++E+S Sbjct: 184 APSSNAIEVYISRLRTKLTPAGISIRTIRGFGYLIEES 221 >ref|YP_932479.1| two-component response regulatory protein [Azoarcus sp. BH72] emb|CAL93592.1| probable two-component response regulatory protein [Azoarcus sp. BH72] Length = 228 Score = 209 bits (531), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 111/221 (50%), Positives = 146/221 (66%), Gaps = 6/221 (2%) Query: 1 LLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDA----LSQRFNAAVLVLDIGLPGIDGFE 56 LL EDDPV+ DG+ R L G+ V V NG +A SQ F+ +L+LD+GLP + G E Sbjct: 4 LLAEDDPVIADGIVRALKRGGYAVDHVGNGAEADTAVASQPFD--LLILDLGLPRLPGIE 61 Query: 57 VLRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAP 116 VL+R+RA + PVL+LTA+D + DRV GL+ GADDYL KPFA PEL AR++AL RR Sbjct: 62 VLKRLRARKSALPVLILTAQDGVEDRVRGLDAGADDYLTKPFALPELEARVRALTRRGTG 121 Query: 117 QPAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWG 176 QP + VG LS D A + I G+ +ELS RE +LE + R+VSK Q++D + WG Sbjct: 122 QPRCIEVGNLSYDQADRVVKICGQVVELSAREIGLLEVFILRVGRLVSKDQLVDHLCGWG 181 Query: 177 EDFTINAVEVYVSRIRLKIADSGVAIRTIRGFGYMLEKSEA 217 E+ + NA+EVYV R+R K+ SGV I T+RG GY LE +A Sbjct: 182 EEVSSNAIEVYVHRLRKKLEASGVRIVTVRGLGYCLENPDA 222 >ref|YP_002355076.1| winged helix family two component transcriptional regulator [Thauera sp. MZ1T] gb|ACK54180.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] Length = 230 Score = 207 bits (527), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 108/221 (48%), Positives = 146/221 (66%), Gaps = 6/221 (2%) Query: 1 LLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDA----LSQRFNAAVLVLDIGLPGIDGFE 56 LL EDDPV+ DG+ R L G V V +G +A Q ++ +L+LD+GLP ++G E Sbjct: 4 LLAEDDPVIADGICRALRRGGCAVDHVADGMEADAALAGQGYD--LLILDLGLPRMNGIE 61 Query: 57 VLRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAP 116 VL+R+RA + PVL+LTA+D + DRV GL+ GADDYL KPFA PEL AR++AL RR Sbjct: 62 VLKRLRARKSAQPVLILTAQDGVDDRVRGLDAGADDYLTKPFALPELEARVRALTRRGTG 121 Query: 117 QPAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWG 176 QP + +G LS D A + I G+ +ELS RE +LE + R+VSK Q++D + WG Sbjct: 122 QPRCIEIGQLSYDQADRVVKIGGQLVELSAREIGLLEIFLLRVGRLVSKDQLVDHLCGWG 181 Query: 177 EDFTINAVEVYVSRIRLKIADSGVAIRTIRGFGYMLEKSEA 217 E+ + NA+EVYV R+R K+ DSGV I T+RG GY LE +A Sbjct: 182 EEVSSNAIEVYVHRLRKKLEDSGVRIVTVRGLGYCLENPDA 222 >ref|YP_157648.1| two-component response regulatory protein [Aromatoleum aromaticum EbN1] emb|CAI06747.1| Two-component response regulatory protein [Aromatoleum aromaticum EbN1] Length = 228 Score = 206 bits (524), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 107/221 (48%), Positives = 148/221 (66%), Gaps = 6/221 (2%) Query: 1 LLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDA----LSQRFNAAVLVLDIGLPGIDGFE 56 LL EDD V+ +GL R L G+ V V +G++A +Q ++ +L+LD+GLP + G + Sbjct: 4 LLAEDDQVIANGLGRALKRSGYAVDHVASGSEADTALATQTYD--LLILDLGLPKLPGID 61 Query: 57 VLRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAP 116 VL+R+RA + PVL+LTA+D + +RV GL+ GADDYL KPFA PEL AR++AL RR Sbjct: 62 VLKRLRARKSALPVLILTAQDGVEERVRGLDAGADDYLTKPFALPELEARVRALTRRGTG 121 Query: 117 QPAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWG 176 QP + +G LS D A + A I+G+ +ELS RE +LE R+VSK QI+D + WG Sbjct: 122 QPRCIEIGSLSYDQADRVAKINGQVVELSAREVGLLEVFALRVGRLVSKDQIVDHLCGWG 181 Query: 177 EDFTINAVEVYVSRIRLKIADSGVAIRTIRGFGYMLEKSEA 217 E+ + NA+EVYV R+R K+ DSGV I T+RG GY LE +A Sbjct: 182 EEVSSNAIEVYVHRLRKKLEDSGVRIVTVRGLGYCLENPDA 222 >ref|YP_001057860.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gb|ABN82550.1| DNA-binding response regulator [Burkholderia pseudomallei 668] Length = 247 Score = 204 bits (519), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 112/220 (50%), Positives = 149/220 (67%), Gaps = 7/220 (3%) Query: 1 LLVEDDPVLTDGLSRVLNSHGFTVHTVNNG---NDALS-QRFNAAVLVLDIGLPGIDGFE 56 L+ EDD +L DGL+R L G+ V V NG + ALS Q F+ +L+LD+GLP + G E Sbjct: 4 LIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFD--LLILDLGLPKMSGLE 61 Query: 57 VLRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSA- 115 VLRR+RA +N PVL+LTA D++ +RV GL+LGADDY+ KPFA EL AR++AL RR A Sbjct: 62 VLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGAG 121 Query: 116 PQPAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLPW 175 P + G LS D + A + R +ELS RE +LE L+Q R+VSK+Q++D + W Sbjct: 122 GGPTVVRHGSLSFDQVGRIAYANERMLELSARELGLLEVLLQRIGRLVSKEQLVDHLCEW 181 Query: 176 GEDFTINAVEVYVSRIRLKIADSGVAIRTIRGFGYMLEKS 215 GE+ + NA+EVYV R+R KI SGV I T+RG GY LEK+ Sbjct: 182 GEEVSNNAIEVYVHRLRKKIEPSGVRITTVRGLGYCLEKA 221