BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0011.p (222 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776780.1| response regulator consisting of a CheY-like... 448 e-124 ref|YP_004753123.1| putative response regulator protein [Collimo... 357 8e-97 ref|YP_001887792.1| two component winged helix family transcript... 310 1e-82 ref|ZP_06845517.1| two component transcriptional regulator, wing... 309 2e-82 ref|YP_554801.1| two component transcriptional regulator [Burkho... 309 2e-82 ref|YP_003608205.1| transcriptional regulator [Burkholderia sp. ... 306 1e-81 ref|ZP_02881849.1| two component transcriptional regulator, wing... 306 2e-81 ref|YP_004231015.1| winged helix family two component transcript... 304 5e-81 ref|ZP_03266742.1| two component transcriptional regulator, wing... 304 5e-81 ref|YP_001860127.1| two component transcriptional regulator [Bur... 303 1e-80 >ref|YP_003776780.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ64872.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 448 bits (1152), Expect = e-124, Method: Compositional matrix adjust. Identities = 222/222 (100%), Positives = 222/222 (100%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK Sbjct: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT Sbjct: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS Sbjct: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 Query: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQRD 222 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQRD Sbjct: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQRD 222 >ref|YP_004753123.1| putative response regulator protein [Collimonas fungivorans Ter331] gb|AEK62300.1| putative response regulator protein [Collimonas fungivorans Ter331] Length = 224 Score = 357 bits (916), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 171/222 (77%), Positives = 197/222 (88%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 MKLLLIEDNP LA WL +ILKE KF +D+A+DGE AD++L+ E+YDVVLLDL LPK++GK Sbjct: 1 MKLLLIEDNPPLALWLSKILKEDKFTIDLASDGEAADRLLQSESYDVVLLDLQLPKMNGK 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 VLRRLRERHN VPVMILTASGS+DEKV+CLGAGADDYLVKPFE+RELVARIK L+RRQT Sbjct: 61 AVLRRLRERHNNVPVMILTASGSVDEKVDCLGAGADDYLVKPFEVRELVARIKALIRRQT 120 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 P KAAE+HC +L YDSNTRQF++ G LALP REHDVLE+L+L+QGKTVSKTALM GVF Sbjct: 121 PGKAAEMHCADLRYDSNTRQFSIAGKLLALPGREHDVLEILMLKQGKTVSKTALMDGVFG 180 Query: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQRD 222 L +EPSADAIE+YI RLRKKL+ AAIMTLRGLGYLL+Q+D Sbjct: 181 LDDEPSADAIEIYIHRLRKKLEHCQAAIMTLRGLGYLLKQKD 222 >ref|YP_001887792.1| two component winged helix family transcriptional regulator [Burkholderia phytofirmans PsJN] gb|ACD18422.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 225 Score = 310 bits (793), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 148/222 (66%), Positives = 183/222 (82%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 MKLLLIEDNP LAHWL ++L++ F +D DG+ ADQ+LR +YDV+LLDL LPKL GK Sbjct: 1 MKLLLIEDNPTLAHWLAKMLEQEAFALDTVQDGDAADQLLRTNHYDVILLDLNLPKLSGK 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 NVLRRLR+R + PV+ILTASGSIDEKVE LGAGADDYLVKPFE+REL+ARIKV +RRQ+ Sbjct: 61 NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 120 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 P KA+E+ CG+L +D +TRQF + G L + RE VLE LILR GKTV+K AL+ +F+ Sbjct: 121 PSKASEVVCGDLTFDIDTRQFTLKGAPLNVTPRERSVLETLILRLGKTVTKPALVDAIFT 180 Query: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQRD 222 L++EPS DA+E+YISRLRKKLD S AAI+TLRGLGYLLR+++ Sbjct: 181 LADEPSEDAVEIYISRLRKKLDGSSAAIVTLRGLGYLLRKKE 222 >ref|ZP_06845517.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gb|EFG66881.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 296 Score = 309 bits (791), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 148/222 (66%), Positives = 183/222 (82%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 MKLLLIEDNP LAHWL ++L++ F +D DG+ ADQ+LR +YDV+LLDL LPKL GK Sbjct: 72 MKLLLIEDNPTLAHWLAKMLEQEAFALDAVQDGDAADQLLRTNHYDVILLDLNLPKLSGK 131 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 NVLRRLR+R + PV+ILTASGSIDEKVE LGAGADDYLVKPFE+REL+ARIKV +RRQ+ Sbjct: 132 NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 191 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 P KA+E+ CG+L +D +TRQF + G L + RE VLE LILR GKTV+K AL+ +F+ Sbjct: 192 PSKASEVVCGDLAFDIDTRQFTLKGAPLNVTPRERSVLETLILRLGKTVTKPALVDAIFT 251 Query: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQRD 222 L++EPS DA+E+YISRLRKKLD S AAI+TLRGLGYLLR+++ Sbjct: 252 LADEPSEDAVEIYISRLRKKLDGSSAAIVTLRGLGYLLRKKE 293 >ref|YP_554801.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gb|ABE35451.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 225 Score = 309 bits (791), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 148/222 (66%), Positives = 183/222 (82%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 MKLLLIEDNP LAHWL ++L++ F +D DG+ ADQ+LR +YDV+LLDL LPKL GK Sbjct: 1 MKLLLIEDNPTLAHWLAKMLEQEAFALDAVQDGDAADQLLRTNHYDVILLDLNLPKLSGK 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 NVLRRLR+R + PV+ILTASGSIDEKVE LGAGADDYLVKPFE+REL+ARIKV +RRQ+ Sbjct: 61 NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 120 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 P KA+E+ CG+L +D +TRQF + G L + RE VLE LILR GKTV+K AL+ +F+ Sbjct: 121 PSKASEVVCGDLAFDIDTRQFTLKGAPLNVTPRERSVLETLILRLGKTVTKPALVDAIFT 180 Query: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQRD 222 L++EPS DA+E+YISRLRKKLD S AAI+TLRGLGYLLR+++ Sbjct: 181 LADEPSEDAVEIYISRLRKKLDGSSAAIVTLRGLGYLLRKKE 222 >ref|YP_003608205.1| transcriptional regulator [Burkholderia sp. CCGE1002] gb|ADG18694.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] Length = 225 Score = 306 bits (785), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 148/222 (66%), Positives = 183/222 (82%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 MKLLLIEDNP LAHWL ++L++ F +D DG+ AD++LR +YDV+LLDL LPKL GK Sbjct: 1 MKLLLIEDNPTLAHWLAKMLEQEAFALDAVQDGDEADRLLRTNHYDVILLDLNLPKLSGK 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 NVLRRLR+R + PV+ILTASGSIDEKVE LGAGADDYLVKPFE+REL+ARIKV +RRQ+ Sbjct: 61 NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 120 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 P KA+E+ CG+L +D +TRQF + G L + RE VLE LILR GKTV+K AL+ +F+ Sbjct: 121 PSKASEVVCGDLSFDIDTRQFTLKGAPLNVTPRERSVLEALILRLGKTVTKPALVDAIFT 180 Query: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQRD 222 L++EPS DA+E+YISRLRKKLD S AAI+TLRGLGYLLR+R+ Sbjct: 181 LADEPSEDAVEIYISRLRKKLDGSSAAIVTLRGLGYLLRKRE 222 >ref|ZP_02881849.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gb|EDT12094.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 225 Score = 306 bits (783), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 146/222 (65%), Positives = 183/222 (82%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 MKLLLIEDNP LAHWL ++L++ F +D DG+ AD++L+ +YDV+LLDL LPKL GK Sbjct: 1 MKLLLIEDNPTLAHWLAKMLEQEAFALDAVQDGDAADRLLQSNHYDVILLDLNLPKLSGK 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 NVLRRLR+R + PV+ILTASGSIDEKVE LGAGADDYLVKPFE+REL+ARIKV +RRQ+ Sbjct: 61 NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 120 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 P KA+E+ CG+L +D +TRQF + G L + RE VLE LILR GKTV+K AL+ +F+ Sbjct: 121 PSKASEVVCGDLTFDIDTRQFTLKGAPLNVTPRERSVLETLILRLGKTVTKPALVDAIFT 180 Query: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQRD 222 L++EPS DA+E+YISRLRKKLD S AAI+TLRGLGYLLR+++ Sbjct: 181 LADEPSEDAVEIYISRLRKKLDGSSAAIVTLRGLGYLLRKKE 222 >ref|YP_004231015.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gb|ADX57955.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 225 Score = 304 bits (779), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 146/222 (65%), Positives = 184/222 (82%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 MKLLLIEDNP L+HWL ++L++ F +D DG+ AD++L+ +YDV+LLDL LPKL GK Sbjct: 1 MKLLLIEDNPTLSHWLAKMLEQEAFALDAVQDGDSADRLLQTNHYDVILLDLNLPKLSGK 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 NVLRRLR+R + PV+ILTASGSIDEKVE LGAGADDYLVKPFE+RELVARIKV +RRQ+ Sbjct: 61 NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELVARIKVAIRRQS 120 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 P KA+E+ CG+L +D +TRQF + G+ L + RE VLE LILR GKTV+K AL+ +F+ Sbjct: 121 PSKASEVVCGDLAFDIDTRQFTLKGMPLNVTPRERTVLETLILRLGKTVTKPALVDAIFT 180 Query: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQRD 222 L++EPS DA+E+YISRLRKKLD S AAI+TLRGLGYLLR+++ Sbjct: 181 LADEPSEDAVEIYISRLRKKLDGSSAAIVTLRGLGYLLRKKE 222 >ref|ZP_03266742.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gb|EEA01648.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 225 Score = 304 bits (779), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 147/222 (66%), Positives = 182/222 (81%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 MKLLLIEDNP LAHWL ++L++ F +D DG+ AD++LR +YDV+LLDL LPKL GK Sbjct: 1 MKLLLIEDNPTLAHWLAKMLEQEAFALDAVQDGDEADRLLRTNHYDVILLDLNLPKLSGK 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 NVLRRLR+R + PV+ILTASGSIDEKVE LGAGADDYLVKPFE+REL+ARIKV +RRQ+ Sbjct: 61 NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 120 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 P KA E+ CG+L +D +TRQF + G L + RE VLE LILR GKTV+K AL+ +F+ Sbjct: 121 PSKAGEVVCGDLSFDIDTRQFTLKGAPLNVTPRERSVLEALILRLGKTVTKPALVDAIFT 180 Query: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQRD 222 L++EPS DA+E+YISRLRKKLD S AAI+TLRGLGYLLR+++ Sbjct: 181 LADEPSEDAVEIYISRLRKKLDGSSAAIVTLRGLGYLLRKKE 222 >ref|YP_001860127.1| two component transcriptional regulator [Burkholderia phymatum STM815] gb|ACC73081.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 237 Score = 303 bits (777), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 146/222 (65%), Positives = 178/222 (80%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 MKLLLIEDNP L+HWL ++L++ F +D DGE ADQ+L YDVVLLDL LP+L GK Sbjct: 13 MKLLLIEDNPTLSHWLARMLEQDAFALDTVQDGEAADQLLSMNRYDVVLLDLNLPRLSGK 72 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 NVLRRLR+R + PVMILTASGSIDEKVE LGAGADDYLVKPFE+REL+AR+KV++RRQ+ Sbjct: 73 NVLRRLRQRGDATPVMILTASGSIDEKVELLGAGADDYLVKPFEVRELIARVKVMIRRQS 132 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 A E+ CG+L +D +TRQF + GV L + RE VLE LILR GKTVSK ALM +F+ Sbjct: 133 ASTANEVSCGDLAFDIDTRQFTLKGVPLNVTPRERSVLETLILRMGKTVSKAALMDSIFT 192 Query: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQRD 222 ++PS DA+E+Y+SRLRKKLD S AAI+TLRGLGYLLR++D Sbjct: 193 HDDQPSEDALEIYVSRLRKKLDGSSAAIVTLRGLGYLLRKKD 234