BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0111.p (144 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774443.1| sugar ABC transporter periplasmic protein [H... 276 9e-73 ref|YP_004752841.1| ABC sugar transporter, periplasmic ligand bi... 241 2e-62 ref|YP_004153409.1| periplasmic binding protein/laci transcripti... 232 2e-59 ref|YP_553911.1| sugar ABC transporter periplasmic ligand bindin... 172 2e-41 ref|ZP_06838954.1| periplasmic binding protein/LacI transcriptio... 171 3e-41 ref|YP_004228076.1| periplasmic-binding protein/LacI transcripti... 171 4e-41 ref|YP_556480.1| ABC sugar transporter, periplasmic ligand bindi... 170 5e-41 ref|YP_001860813.1| periplasmic binding protein/LacI transcripti... 169 2e-40 ref|YP_003907060.1| periplasmic-binding protein/LacI transcripti... 169 2e-40 ref|ZP_02887427.1| periplasmic binding protein/LacI transcriptio... 169 2e-40 >ref|YP_003774443.1| sugar ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ62535.1| ABC-type sugar transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 335 Score = 276 bits (705), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 139/144 (96%), Positives = 140/144 (97%), Gaps = 2/144 (1%) Query: 1 MNKKSACVLVSALAAVGFASALQAQNKPIDIVTVVKITGISWFNRMEVGVKEFAAANPGV 60 MNKKSACVLVSALAAVGFASALQAQNKPIDIVTVVKITGISWFNRMEVGVKEFAAANPGV Sbjct: 2 MNKKSACVLVSALAAVGFASALQAQNKPIDIVTVVKITGISWFNRMEVGVKEFAAANPGV 61 Query: 61 TTRQIGPAQSDAAQQQRLVEDLVAKKVDAIAVVSMDPPTLEPVLKRALDRGIKVVTHEAD 120 TTRQIGPAQSDAAQQQRLVEDLVAKKVDAIAVVSMDPPTLEPVLKRALDRGIKVVTHEAD Sbjct: 62 TTRQIGPAQSDAAQQQRLVEDLVAKKVDAIAVVSMDPPTLEPVLKRALDRGIKVVTHEAD 121 Query: 121 NQKNTLVDIEAFDNTVGAQGRRLH 144 NQKNTLVDIEAFDNT A G RL+ Sbjct: 122 NQKNTLVDIEAFDNT--AYGARLN 143 >ref|YP_004752841.1| ABC sugar transporter, periplasmic ligand binding protein [Collimonas fungivorans Ter331] gb|AEK62018.1| ABC sugar transporter, periplasmic ligand binding protein [Collimonas fungivorans Ter331] Length = 336 Score = 241 bits (616), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 118/146 (80%), Positives = 132/146 (90%), Gaps = 4/146 (2%) Query: 1 MNKKSAC--VLVSALAAVGFASALQAQNKPIDIVTVVKITGISWFNRMEVGVKEFAAANP 58 M KK+ C +++ ALA++ + A+QA+NKPID+VTVVKITGISWFNRMEVGVKEF A NP Sbjct: 1 MLKKTTCAALVLGALASLAYTGAIQAENKPIDVVTVVKITGISWFNRMEVGVKEFGAGNP 60 Query: 59 GVTTRQIGPAQSDAAQQQRLVEDLVAKKVDAIAVVSMDPPTLEPVLKRALDRGIKVVTHE 118 GVTTRQIGPAQSDAAQQQRLVEDLVAKKVDAIAVVSMDPPTLEPVLKRA++RGIKVVTHE Sbjct: 61 GVTTRQIGPAQSDAAQQQRLVEDLVAKKVDAIAVVSMDPPTLEPVLKRAMERGIKVVTHE 120 Query: 119 ADNQKNTLVDIEAFDNTVGAQGRRLH 144 ADNQKNT+VDIEAFDNT A G RL+ Sbjct: 121 ADNQKNTMVDIEAFDNT--AYGARLN 144 >ref|YP_004153409.1| periplasmic binding protein/laci transcriptional regulator [Variovorax paradoxus EPS] gb|ADU35298.1| periplasmic binding protein/LacI transcriptional regulator [Variovorax paradoxus EPS] Length = 334 Score = 232 bits (591), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 116/141 (82%), Positives = 125/141 (88%), Gaps = 3/141 (2%) Query: 4 KSACVLVSALAAVGFASALQAQNKPIDIVTVVKITGISWFNRMEVGVKEFAAANPGVTTR 63 K AC ++ AL V FASAL AQ KP DIVTVVKITGISWFNRMEVGVKEF A+ PGV TR Sbjct: 6 KIACTVL-ALGTVAFASALHAQGKPQDIVTVVKITGISWFNRMEVGVKEFGASTPGVATR 64 Query: 64 QIGPAQSDAAQQQRLVEDLVAKKVDAIAVVSMDPPTLEPVLKRALDRGIKVVTHEADNQK 123 QIGPAQSDAAQQQRL+EDLVAKKVDAIAVVSMDPPTLEPVLKRA++RGIKVVTHEADNQK Sbjct: 65 QIGPAQSDAAQQQRLIEDLVAKKVDAIAVVSMDPPTLEPVLKRAMERGIKVVTHEADNQK 124 Query: 124 NTLVDIEAFDNTVGAQGRRLH 144 NT+VDIEAFDNT A G R++ Sbjct: 125 NTMVDIEAFDNT--AYGARIN 143 >ref|YP_553911.1| sugar ABC transporter periplasmic ligand binding protein [Burkholderia xenovorans LB400] gb|ABE34561.1| monosaccharide ABC transporter substrate-binding protein, CUT2 family [Burkholderia xenovorans LB400] Length = 334 Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 84/125 (67%), Positives = 100/125 (80%), Gaps = 1/125 (0%) Query: 16 VGFASALQAQNKPIDIVTVVKITGISWFNRMEVGVKEFAAANPGVTTRQIGPAQSDAAQQ 75 +G +A QA IVTVVK+TGI+WFNRM+ GVK+FA NPGVT Q GP ++DAAQQ Sbjct: 17 IGVIAAAQAATNET-IVTVVKVTGINWFNRMDDGVKQFAKDNPGVTAYQTGPGRADAAQQ 75 Query: 76 QRLVEDLVAKKVDAIAVVSMDPPTLEPVLKRALDRGIKVVTHEADNQKNTLVDIEAFDNT 135 +++EDL+AKKV AIAVV DPPTLEP LK+A+DRGIKVVTHEADN+KNT+VDIEAFDNT Sbjct: 76 LKIIEDLIAKKVTAIAVVPYDPPTLEPALKKAMDRGIKVVTHEADNEKNTMVDIEAFDNT 135 Query: 136 VGAQG 140 G Sbjct: 136 AYGAG 140 >ref|ZP_06838954.1| periplasmic binding protein/LacI transcriptional regulator [Burkholderia sp. Ch1-1] gb|EFG73400.1| periplasmic binding protein/LacI transcriptional regulator [Burkholderia sp. Ch1-1] Length = 334 Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 85/125 (68%), Positives = 99/125 (79%), Gaps = 1/125 (0%) Query: 16 VGFASALQAQNKPIDIVTVVKITGISWFNRMEVGVKEFAAANPGVTTRQIGPAQSDAAQQ 75 VG +A QA IVTVVK+TGI+WFNRM+ GVK+FA NPGVT Q GP ++DAAQQ Sbjct: 17 VGVIAAAQAATNET-IVTVVKVTGINWFNRMDDGVKQFAKDNPGVTAYQTGPGRADAAQQ 75 Query: 76 QRLVEDLVAKKVDAIAVVSMDPPTLEPVLKRALDRGIKVVTHEADNQKNTLVDIEAFDNT 135 +++EDL+AKKV AIAVV DPPTLEP LK+A+DRGIKVVTHEADN KNT+VDIEAFDNT Sbjct: 76 LKIIEDLIAKKVTAIAVVPYDPPTLEPALKKAMDRGIKVVTHEADNAKNTMVDIEAFDNT 135 Query: 136 VGAQG 140 G Sbjct: 136 AYGAG 140 >ref|YP_004228076.1| periplasmic-binding protein/LacI transcriptional regulator [Burkholderia sp. CCGE1001] gb|ADX55016.1| periplasmic binding protein/LacI transcriptional regulator [Burkholderia sp. CCGE1001] Length = 334 Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 80/110 (72%), Positives = 93/110 (84%) Query: 31 IVTVVKITGISWFNRMEVGVKEFAAANPGVTTRQIGPAQSDAAQQQRLVEDLVAKKVDAI 90 IVTVVK+TGI+WFNRM+ GVKEFA NPGV+ Q GP ++DAAQQ +++EDL+AKKV AI Sbjct: 31 IVTVVKVTGINWFNRMDEGVKEFAKDNPGVSAYQTGPGRADAAQQLKIIEDLIAKKVTAI 90 Query: 91 AVVSMDPPTLEPVLKRALDRGIKVVTHEADNQKNTLVDIEAFDNTVGAQG 140 AVV DPPTLEP LK+A+DRGIKVVTHEADN KNT+VDIEAFDNT G Sbjct: 91 AVVPYDPPTLEPALKKAMDRGIKVVTHEADNAKNTMVDIEAFDNTAYGAG 140 >ref|YP_556480.1| ABC sugar transporter, periplasmic ligand binding protein [Burkholderia xenovorans LB400] gb|ABE37130.1| monosaccharide ABC transporter substrate-binding protein, CUT2 family [Burkholderia xenovorans LB400] Length = 334 Score = 170 bits (431), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 80/110 (72%), Positives = 93/110 (84%) Query: 31 IVTVVKITGISWFNRMEVGVKEFAAANPGVTTRQIGPAQSDAAQQQRLVEDLVAKKVDAI 90 IVTVVK+TGI+WFNRM+ GVK+FA NPGVT Q GP ++DAAQQ +++EDL+AKKV AI Sbjct: 31 IVTVVKVTGINWFNRMDDGVKQFARDNPGVTAYQTGPGRADAAQQLKIIEDLIAKKVTAI 90 Query: 91 AVVSMDPPTLEPVLKRALDRGIKVVTHEADNQKNTLVDIEAFDNTVGAQG 140 AVV DPPTLEP LK+A+DRGIKVVTHEADN KNT+VDIEAFDNT G Sbjct: 91 AVVPYDPPTLEPALKKAMDRGIKVVTHEADNAKNTMVDIEAFDNTAYGAG 140 >ref|YP_001860813.1| periplasmic binding protein/LacI transcriptional regulator [Burkholderia phymatum STM815] gb|ACC73767.1| periplasmic binding protein/LacI transcriptional regulator [Burkholderia phymatum STM815] Length = 334 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 79/110 (71%), Positives = 92/110 (83%) Query: 31 IVTVVKITGISWFNRMEVGVKEFAAANPGVTTRQIGPAQSDAAQQQRLVEDLVAKKVDAI 90 IVTVVK+TGI+WFNRM+ GVKEFA NPGV Q GP ++DAAQQ +++EDL+AKKV AI Sbjct: 31 IVTVVKVTGINWFNRMDEGVKEFAKDNPGVQAYQTGPGRADAAQQLKIIEDLIAKKVTAI 90 Query: 91 AVVSMDPPTLEPVLKRALDRGIKVVTHEADNQKNTLVDIEAFDNTVGAQG 140 AVV DPPTLEP LK+A+DRGIKVVTHEADN KNT+VDIEAFDN+ G Sbjct: 91 AVVPYDPPTLEPALKKAMDRGIKVVTHEADNAKNTMVDIEAFDNSAYGAG 140 >ref|YP_003907060.1| periplasmic-binding protein/LacI transcriptional regulator [Burkholderia sp. CCGE1003] gb|ADN57769.1| periplasmic binding protein/LacI transcriptional regulator [Burkholderia sp. CCGE1003] Length = 334 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 79/110 (71%), Positives = 92/110 (83%) Query: 31 IVTVVKITGISWFNRMEVGVKEFAAANPGVTTRQIGPAQSDAAQQQRLVEDLVAKKVDAI 90 IVTVVK+TGI+WFNRM+ GVKEFA N G+T Q GP ++DAAQQ +++EDL+AKKV AI Sbjct: 31 IVTVVKVTGINWFNRMDDGVKEFAKENAGITAYQTGPGRADAAQQLKIIEDLIAKKVTAI 90 Query: 91 AVVSMDPPTLEPVLKRALDRGIKVVTHEADNQKNTLVDIEAFDNTVGAQG 140 AVV DPPTLEP LK+A+DRGIKVVTHEADN KNT+VDIEAFDNT G Sbjct: 91 AVVPYDPPTLEPALKKAMDRGIKVVTHEADNAKNTMVDIEAFDNTAYGAG 140 >ref|ZP_02887427.1| periplasmic binding protein/LacI transcriptional regulator [Burkholderia graminis C4D1M] gb|EDT06974.1| periplasmic binding protein/LacI transcriptional regulator [Burkholderia graminis C4D1M] Length = 334 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 79/110 (71%), Positives = 92/110 (83%) Query: 31 IVTVVKITGISWFNRMEVGVKEFAAANPGVTTRQIGPAQSDAAQQQRLVEDLVAKKVDAI 90 IVTVVK+TGI+WFNRM+ GVKEFA N G+T Q GP ++DAAQQ +++EDL+AKKV AI Sbjct: 31 IVTVVKVTGINWFNRMDDGVKEFAKENTGITAYQTGPGRADAAQQLKIIEDLIAKKVTAI 90 Query: 91 AVVSMDPPTLEPVLKRALDRGIKVVTHEADNQKNTLVDIEAFDNTVGAQG 140 AVV DPPTLEP LK+A+DRGIKVVTHEADN KNT+VDIEAFDNT G Sbjct: 91 AVVPYDPPTLEPALKKAMDRGIKVVTHEADNAKNTMVDIEAFDNTAYGAG 140