BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0109.p (106 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774445.1| ribokinase [Herbaspirillum seropedicae SmR1]... 202 2e-50 ref|YP_004153411.1| ribokinase [Variovorax paradoxus EPS] >gi|31... 124 5e-27 ref|NP_108577.1| ribokinase [Mesorhizobium loti MAFF303099] >gi|... 124 5e-27 ref|YP_004613373.1| ribokinase [Mesorhizobium opportunistum WSM2... 123 1e-26 ref|YP_004143568.1| ribokinase [Mesorhizobium ciceri biovar bise... 119 1e-25 ref|YP_510063.1| PfkB [Jannaschia sp. CCS1] >gi|88864161|gb|ABD5... 119 2e-25 gb|ADI17199.1| sugar kinases, ribokinase family [uncultured Rhod... 110 5e-23 ref|YP_002756475.1| ribokinase [Acidobacterium capsulatum ATCC 5... 109 1e-22 ref|YP_004752843.1| ribokinase [Collimonas fungivorans Ter331] >... 109 2e-22 ref|YP_001533316.1| putative ribokinase [Dinoroseobacter shibae ... 107 4e-22 >ref|YP_003774445.1| ribokinase [Herbaspirillum seropedicae SmR1] gb|ADJ62537.1| ribokinase protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 202 bits (513), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 105/106 (99%), Positives = 106/106 (100%) Query: 1 VLLERGVGCALITLGAQGALLHSRSQSLHLPALCAGTVVETAGAGDAFNGAFAAGLAEGM 60 VLLERGVGCALITLGAQG+LLHSRSQSLHLPALCAGTVVETAGAGDAFNGAFAAGLAEGM Sbjct: 214 VLLERGVGCALITLGAQGSLLHSRSQSLHLPALCAGTVVETAGAGDAFNGAFAAGLAEGM 273 Query: 61 SAEEAARLATAVAAISVTRPGTAPSMPSRQEALALLDTHASVLAQA 106 SAEEAARLATAVAAISVTRPGTAPSMPSRQEALALLDTHASVLAQA Sbjct: 274 SAEEAARLATAVAAISVTRPGTAPSMPSRQEALALLDTHASVLAQA 319 >ref|YP_004153411.1| ribokinase [Variovorax paradoxus EPS] gb|ADU35300.1| ribokinase [Variovorax paradoxus EPS] Length = 316 Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 68/99 (68%), Positives = 74/99 (74%), Gaps = 1/99 (1%) Query: 2 LLERGVGCALITLGAQGALLHSRSQSLHLPALCAGTVVETAGAGDAFNGAFAAGLAEGMS 61 L +GVGCALITLG +GALLHS S S+H+P AG V ET GAGDAFNG FAA LAEG S Sbjct: 218 FLAKGVGCALITLGDKGALLHSASGSVHIPVFNAGAVKETTGAGDAFNGGFAAALAEGAS 277 Query: 62 AEEAARLATAVAAISVTRPGTAPSMPSRQEALALLD-TH 99 EAAR +AVAAISVTR GTAPSMP R E AL+ TH Sbjct: 278 PLEAARFGSAVAAISVTRAGTAPSMPRRAEVDALMHRTH 316 >ref|NP_108577.1| ribokinase [Mesorhizobium loti MAFF303099] dbj|BAB54363.1| ribokinase [Mesorhizobium loti MAFF303099] Length = 309 Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 62/95 (65%), Positives = 74/95 (77%) Query: 2 LLERGVGCALITLGAQGALLHSRSQSLHLPALCAGTVVETAGAGDAFNGAFAAGLAEGMS 61 LLE+GVG ++TLG +GALLHS+ +S H+PA+ AG VVET GAGDAFNG FAA L+ G+ Sbjct: 212 LLEKGVGTVIVTLGDKGALLHSKGRSEHVPAISAGPVVETTGAGDAFNGGFAAALSRGVE 271 Query: 62 AEEAARLATAVAAISVTRPGTAPSMPSRQEALALL 96 +A R A AVA ISVTRPGTAPSMP+ QE ALL Sbjct: 272 PLQAVRFACAVAGISVTRPGTAPSMPTLQEVEALL 306 >ref|YP_004613373.1| ribokinase [Mesorhizobium opportunistum WSM2075] gb|AEH89279.1| ribokinase [Mesorhizobium opportunistum WSM2075] Length = 314 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 61/95 (64%), Positives = 73/95 (76%) Query: 2 LLERGVGCALITLGAQGALLHSRSQSLHLPALCAGTVVETAGAGDAFNGAFAAGLAEGMS 61 LLE+GVG ++TLG +GALLH++ +S H+P + AG VVET GAGDAFNG FAA L+ G+ Sbjct: 217 LLEKGVGTVIVTLGDKGALLHAKDRSEHVPVVSAGPVVETTGAGDAFNGGFAAALSRGVE 276 Query: 62 AEEAARLATAVAAISVTRPGTAPSMPSRQEALALL 96 EA R A AVA ISVTRPGTAPSMP+ QE ALL Sbjct: 277 PLEAVRFACAVAGISVTRPGTAPSMPTLQEVEALL 311 >ref|YP_004143568.1| ribokinase [Mesorhizobium ciceri biovar biserrulae WSM1271] gb|ADV13518.1| ribokinase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 309 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 60/95 (63%), Positives = 73/95 (76%) Query: 2 LLERGVGCALITLGAQGALLHSRSQSLHLPALCAGTVVETAGAGDAFNGAFAAGLAEGMS 61 LL++GVG ++TLG +GALLHS+ +S H+PA+ AG VVET GAGDAFNG AA L+ G+ Sbjct: 212 LLKKGVGTVIVTLGDKGALLHSKDRSDHVPAVSAGPVVETTGAGDAFNGGLAAALSRGVE 271 Query: 62 AEEAARLATAVAAISVTRPGTAPSMPSRQEALALL 96 +A R A AVA ISVTRPGTAPSMP+ QE ALL Sbjct: 272 PLQAVRFACAVAGISVTRPGTAPSMPTLQEVEALL 306 >ref|YP_510063.1| PfkB [Jannaschia sp. CCS1] gb|ABD55038.1| PfkB [Jannaschia sp. CCS1] Length = 307 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 63/95 (66%), Positives = 70/95 (73%) Query: 2 LLERGVGCALITLGAQGALLHSRSQSLHLPALCAGTVVETAGAGDAFNGAFAAGLAEGMS 61 LL RGV A+ITLG G L H ++H+PA+ AG VVET GAGDAFNG FAA LAEGM+ Sbjct: 210 LLARGVKAAIITLGENGCLFHDGQSAVHIPAISAGPVVETTGAGDAFNGGFAAALAEGMA 269 Query: 62 AEEAARLATAVAAISVTRPGTAPSMPSRQEALALL 96 EA RL TA AAISVTR GTAPSMP+R E ALL Sbjct: 270 PLEAIRLGTATAAISVTRAGTAPSMPARSEIDALL 304 >gb|ADI17199.1| sugar kinases, ribokinase family [uncultured Rhodobacterales bacterium HF0070_10D05] Length = 306 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 55/95 (57%), Positives = 63/95 (66%) Query: 2 LLERGVGCALITLGAQGALLHSRSQSLHLPALCAGTVVETAGAGDAFNGAFAAGLAEGMS 61 LLE+G A+ITLG QGAL Q +H P+ G +VET GAGDAFNG A LAE M Sbjct: 211 LLEKGASAAVITLGEQGALFKDSKQIIHQPSFQVGPIVETTGAGDAFNGGLAVALAEKMP 270 Query: 62 AEEAARLATAVAAISVTRPGTAPSMPSRQEALALL 96 ++A R A A A+ISVTRPGTAPSMP R E LL Sbjct: 271 IDKALRFACATASISVTRPGTAPSMPDRNEIDTLL 305 >ref|YP_002756475.1| ribokinase [Acidobacterium capsulatum ATCC 51196] gb|ACO32399.1| ribokinase [Acidobacterium capsulatum ATCC 51196] Length = 312 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 60/100 (60%), Positives = 69/100 (69%) Query: 1 VLLERGVGCALITLGAQGALLHSRSQSLHLPALCAGTVVETAGAGDAFNGAFAAGLAEGM 60 VLL RG A++TLGA+GA + S + H+PA AG VV+T GAGDAFN FAA LAEGM Sbjct: 213 VLLARGARHAILTLGARGAYVKSATLKQHIPAFDAGPVVDTTGAGDAFNAGFAAALAEGM 272 Query: 61 SAEEAARLATAVAAISVTRPGTAPSMPSRQEALALLDTHA 100 AAR AVA I+VTRPGT+PSMP R E ALL HA Sbjct: 273 GVIRAARFGCAVAGIAVTRPGTSPSMPRRHEVEALLARHA 312 >ref|YP_004752843.1| ribokinase [Collimonas fungivorans Ter331] gb|AEK62020.1| Ribokinase [Collimonas fungivorans Ter331] Length = 313 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/100 (69%), Positives = 76/100 (76%) Query: 1 VLLERGVGCALITLGAQGALLHSRSQSLHLPALCAGTVVETAGAGDAFNGAFAAGLAEGM 60 V L RGVGCALITLGAQGALLHS S+S+ + G VVETAGAGDAF G FA LAEG Sbjct: 214 VFLARGVGCALITLGAQGALLHSASESVLIAPFSVGPVVETAGAGDAFTGGFATALAEGA 273 Query: 61 SAEEAARLATAVAAISVTRPGTAPSMPSRQEALALLDTHA 100 S +AAR A+AVAAISVTR GTAPSMP+R E ALL + A Sbjct: 274 SPRDAARFASAVAAISVTRAGTAPSMPARAEIDALLRSAA 313 >ref|YP_001533316.1| putative ribokinase [Dinoroseobacter shibae DFL 12] gb|ABV93715.1| putative ribokinase [Dinoroseobacter shibae DFL 12] Length = 305 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 57/95 (60%), Positives = 63/95 (66%) Query: 2 LLERGVGCALITLGAQGALLHSRSQSLHLPALCAGTVVETAGAGDAFNGAFAAGLAEGMS 61 LL RG G ++TLGAQG L S +Q++H PA G VVET GAGDAFNGA A LAEG Sbjct: 210 LLARGPGAVIVTLGAQGVLYRSATQTIHQPAFTPGPVVETTGAGDAFNGALATALAEGQD 269 Query: 62 AEEAARLATAVAAISVTRPGTAPSMPSRQEALALL 96 A R A A+ISVTRPG PSMPSR E ALL Sbjct: 270 TASALRFGCATASISVTRPGAGPSMPSRAEIDALL 304