BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0075.p (251 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775470.1| ype IV pilus assembly protein PilZ [Herbaspi... 509 e-142 ref|YP_001353133.1| hypothetical protein mma_1443 [Janthinobacte... 254 8e-66 ref|YP_001100148.1| hypothetical protein HEAR1873 [Herminiimonas... 244 7e-63 ref|ZP_08276223.1| hypothetical protein IMCC9480_1726 [Oxalobact... 207 1e-51 ref|YP_004694178.1| YcgR family protein [Nitrosomonas sp. Is79A3... 161 7e-38 ref|YP_003166188.1| YcgR family protein [Candidatus Accumulibact... 161 1e-37 gb|EGW59601.1| YcgR family protein [Dechlorosoma suillum PS] 152 6e-35 ref|YP_002889870.1| type IV pilus assembly PilZ [Thauera sp. MZ1... 151 8e-35 ref|YP_004295235.1| YcgR family protein [Nitrosomonas sp. AL212]... 151 8e-35 ref|YP_934214.1| hypothetical protein azo2711 [Azoarcus sp. BH72... 146 3e-33 >ref|YP_003775470.1| ype IV pilus assembly protein PilZ [Herbaspirillum seropedicae SmR1] gb|ADJ63562.1| YcgR and PilZ families (type IV pilus assembly PilZ) protein [Herbaspirillum seropedicae SmR1] Length = 251 Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust. Identities = 250/251 (99%), Positives = 250/251 (99%) Query: 1 MANQDEIDDDSPYRVRSRREIISLLTSMMEKNQLLSLMIKGGSESVITSILEVDADEDAI 60 MANQDEIDDDSPYRVRSRREIISLLTSMMEKNQLLSLMIKGGSESVITSILEVDADEDAI Sbjct: 1 MANQDEIDDDSPYRVRSRREIISLLTSMMEKNQLLSLMIKGGSESVITSILEVDADEDAI 60 Query: 61 TLDAAPSAMLNESIVSSKQIDFEAIYNSIRITFAVEGARQIEYQGRPALQVDIPESLVRL 120 TLDAAPSAMLNESIVSSKQIDFEAIYNSIRITFAVEGARQIEYQGRPALQVDIPESLVRL Sbjct: 61 TLDAAPSAMLNESIVSSKQIDFEAIYNSIRITFAVEGARQIEYQGRPALQVDIPESLVRL 120 Query: 121 QRREFFRIPTPIAKPLRCTFRITQPDGSFVTVVTMLNNISAGGVGITDEKKLLSTTPGVI 180 QRREFFRIPTPIAKPLRCTFRITQ DGSFVTVVTMLNNISAGGVGITDEKKLLSTTPGVI Sbjct: 121 QRREFFRIPTPIAKPLRCTFRITQSDGSFVTVVTMLNNISAGGVGITDEKKLLSTTPGVI 180 Query: 181 YEDCQLELGDNTLVSVKLQVRDCKEFKMTNGKIVNRFGCQFIDIPRTVLAAIQRFITKLE 240 YEDCQLELGDNTLVSVKLQVRDCKEFKMTNGKIVNRFGCQFIDIPRTVLAAIQRFITKLE Sbjct: 181 YEDCQLELGDNTLVSVKLQVRDCKEFKMTNGKIVNRFGCQFIDIPRTVLAAIQRFITKLE 240 Query: 241 REQNAKASGMM 251 REQNAKASGMM Sbjct: 241 REQNAKASGMM 251 >ref|YP_001353133.1| hypothetical protein mma_1443 [Janthinobacterium sp. Marseille] sp|A6SXY6.1|YCGR_JANMA RecName: Full=Flagellar brake protein YcgR; AltName: Full=Cyclic di-GMP binding protein YcgR gb|ABR90520.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 252 Score = 254 bits (649), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 117/250 (46%), Positives = 176/250 (70%), Gaps = 1/250 (0%) Query: 1 MANQDEIDDDSPYRVRSRREIISLLTSMMEKNQLLSLMIKGGSESVITSILEVDADEDAI 60 + + E DD +P+RVRSRRE+I+LL S+ E+NQL+ ++I G+++++TSIL +D D + Sbjct: 3 LVSDHENDDMNPFRVRSRREVIALLRSIGERNQLVRMVINHGADTIVTSILNIDETNDTV 62 Query: 61 TLDAAPSAMLNESIVSSKQIDFEAIYNSIRITFAVEGARQIEYQGRPALQVDIPESLVRL 120 LD AP+A++N+ ++ S ++ FE + +IRI F A Y+ PA + +P S+VRL Sbjct: 63 LLDCAPTAIMNQRVLDSNKLSFETVLENIRILFNSPSAESCMYENLPAFVIPLPTSVVRL 122 Query: 121 QRREFFRIPTPIAKPLRCTFRITQPDGSFVTVVTMLNNISAGGVGITDEKKLLSTTPGVI 180 QRREF+R+PTP+ P+ CT T +G + V T L+NIS GGV + DEKKLLSTT G+ Sbjct: 123 QRREFYRVPTPLTAPVSCTVPYTT-EGVTIEVATTLHNISGGGVSLVDEKKLLSTTIGLT 181 Query: 181 YEDCQLELGDNTLVSVKLQVRDCKEFKMTNGKIVNRFGCQFIDIPRTVLAAIQRFITKLE 240 Y++C++ L + L++V LQVR+ E +TNGK +NR GC+FI+ LA +Q++ITK+E Sbjct: 182 YQNCKIVLPGSGLITVALQVRNVLELTLTNGKSINRIGCEFINPSNGTLATVQKYITKIE 241 Query: 241 REQNAKASGM 250 REQNAKA+G+ Sbjct: 242 REQNAKATGL 251 >ref|YP_001100148.1| hypothetical protein HEAR1873 [Herminiimonas arsenicoxydans] emb|CAL62024.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans] Length = 251 Score = 244 bits (624), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 113/250 (45%), Positives = 179/250 (71%), Gaps = 2/250 (0%) Query: 1 MANQDEIDDDSPYRVRSRREIISLLTSMMEKNQLLSLMIKGGSESVITSILEVDADEDAI 60 +A++ E DD +PYRV SRRE+I+LL S+ E+NQL+ ++I G+++++TSIL++D + + Sbjct: 3 LASEYENDDLNPYRVNSRREVIALLRSIGERNQLVRMLINHGNDTIVTSILQIDETANTV 62 Query: 61 TLDAAPSAMLNESIVSSKQIDFEAIYNSIRITFAVEGARQIEYQGRPALQVDIPESLVRL 120 LD AP+A++N+ +++S+++ FE + +IRI F A+ Y+ PA + +P S++RL Sbjct: 63 LLDCAPTAIMNQRVLNSEKLSFETVLENIRILFNSPAAQSCIYENLPAFIIPLPTSVIRL 122 Query: 121 QRREFFRIPTPIAKPLRCTFRITQPDGSFVTVVTMLNNISAGGVGITDEKKLLSTTPGVI 180 QRREF+R+ TP+ P+ CT + D + VV L+NIS GG+ + DEKKL+ +TPG I Sbjct: 123 QRREFYRVSTPVTNPVYCTIPVKTED-QIIPVVVPLHNISGGGLSVVDEKKLIDSTPGRI 181 Query: 181 YEDCQLELGDNTLVSVKLQVRDCKEFKMTNGKIVNRFGCQFIDIPRTVLAAIQRFITKLE 240 YE+C+L+L +V++ LQVR+ E +TNGK ++R GC F+D LAA+Q++ITKLE Sbjct: 182 YENCRLDLPGG-VVTLALQVRNQLEVTLTNGKSIHRLGCAFVDPSNGALAAVQKYITKLE 240 Query: 241 REQNAKASGM 250 R+QNAKA+G+ Sbjct: 241 RDQNAKATGL 250 >ref|ZP_08276223.1| hypothetical protein IMCC9480_1726 [Oxalobacteraceae bacterium IMCC9480] gb|EGF30312.1| hypothetical protein IMCC9480_1726 [Oxalobacteraceae bacterium IMCC9480] Length = 255 Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 101/243 (41%), Positives = 156/243 (64%), Gaps = 3/243 (1%) Query: 9 DDSPYRVRSRREIISLLTSMMEKNQLLSLMIKGGSESVITSILEVDADEDAITLDAAPSA 68 D SP++V SRREI +L+ ++ ++ QL+ L+I+ ++ +TS+L VD + LD Sbjct: 14 DLSPFKVNSRREITALMRALCDQRQLIRLLIEDSGDAGVTSVLHVDEANGNLILDVPADT 73 Query: 69 MLNESIVSSKQIDFEAIYNSIRITFAVEGARQIEYQGRPALQVDIPESLVRLQRREFFRI 128 + ++ S+ I FE + IRI F + EY G PAL + +P S++RLQRREF+R+ Sbjct: 74 SVTRRLLDSENISFETVLERIRILFFSTRVEECEYGGLPALSIALPASMIRLQRREFYRV 133 Query: 129 PTPIAKPLRCTFRITQPDGSFVTVVTM-LNNISAGGVGITDEKKLLSTTPGVIYEDCQLE 187 TP++ PLRCT +I DG V VT+ L N+S GG+ I D++ L T G IY CQ+ Sbjct: 134 ATPLSTPLRCTIQIV--DGETVQPVTLSLLNVSGGGITIIDDQHQLDHTVGRIYHGCQIY 191 Query: 188 LGDNTLVSVKLQVRDCKEFKMTNGKIVNRFGCQFIDIPRTVLAAIQRFITKLEREQNAKA 247 L +T+V+ L++R+ + ++ NGK +R GC F D+P+ +LA IQR+IT+LEREQNA+ Sbjct: 192 LPGSTVVTTALEIRNSIDLRLENGKHTHRLGCLFHDLPKAMLAVIQRYITRLEREQNARN 251 Query: 248 SGM 250 +G+ Sbjct: 252 NGI 254 >ref|YP_004694178.1| YcgR family protein [Nitrosomonas sp. Is79A3] gb|AEJ00779.1| YcgR family protein [Nitrosomonas sp. Is79A3] Length = 258 Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 83/239 (34%), Positives = 145/239 (60%), Gaps = 3/239 (1%) Query: 3 NQDEIDDDSPYRVRSRREIISLLTSMMEKNQLLSLMIKGGSESVITSILEVDADEDAITL 62 +Q+EID++ +R+ S +I+ +L +M+ N L++L ++ ++TSI+ +DAD + + Sbjct: 18 SQEEIDEN--FRIHSEIDILFILRGIMQSNSLITLYPDYENDFILTSIVAIDADNKEMIV 75 Query: 63 DAAPSAMLNESIVSSKQIDFEAIYNSIRITFAVEGARQIEYQGRPALQVDIPESLVRLQR 122 D + + + SK + F N ++I FA + ++I+++G A V+IP SL+R+QR Sbjct: 76 DYGTNERNCQKALQSKALIFVTTQNRVKIEFACDQIKKIQFKGENAFAVNIPRSLLRIQR 135 Query: 123 REFFRIPTPIAKPLRCTFRITQPDGSFVTVVTMLNNISAGGVGITDEKKLLSTTPGVIYE 182 R FRI TPI KPL+C IT + V +L +IS GG+ + D+ +++ PG+IY Sbjct: 136 RNHFRISTPIVKPLKCVIPITGKGTASKAEVALL-DISCGGIAVIDQHPIINFDPGIIYS 194 Query: 183 DCQLELGDNTLVSVKLQVRDCKEFKMTNGKIVNRFGCQFIDIPRTVLAAIQRFITKLER 241 +CQ+ L + ++ +QV++ E + NG+ R GCQFID+ ++ A IQR+I K E+ Sbjct: 195 NCQIALPEIGTINATIQVKNTYEITLRNGQNCMRAGCQFIDLAASMEAMIQRYIIKQEQ 253 >ref|YP_003166188.1| YcgR family protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gb|ACV34259.1| YcgR family protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 265 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 85/247 (34%), Positives = 141/247 (57%), Gaps = 1/247 (0%) Query: 5 DEIDDDSPYRVRSRREIISLLTSMMEKNQLLSLMIKGGSESVITSILEVDADEDAITLDA 64 ++ DD Y +RSR EI+++L S+++K L+S GS ++TS+L+VD + LD Sbjct: 18 EQPDDYEQYLLRSRPEIVAVLRSLVQKRALVSAYFNRGSSFLLTSVLQVDTGSGQLVLDC 77 Query: 65 APSAMLNESIVSSKQIDFEAIYNSIRITFAVEGARQIEYQGRPALQVDIPESLVRLQRRE 124 N + + Q+ A+ + ++I F + + + GR A +P+ ++RLQRRE Sbjct: 78 GREEATNRQALLADQLILTAMVDKVKIQFTLSKLAETQSAGRAAFSAALPDKVLRLQRRE 137 Query: 125 FFRIPTPIAKPLRCTFRITQPDGSFVTVVTMLNNISAGGVGITDEKKLLSTTP-GVIYED 183 +FR+ TPIAKP++ + +PDGS + V L +IS GGVG+ L + P G + + Sbjct: 138 YFRLSTPIAKPVKFVTTLKRPDGSALIVEASLLDISGGGVGLMASPALAALLPRGGMLTE 197 Query: 184 CQLELGDNTLVSVKLQVRDCKEFKMTNGKIVNRFGCQFIDIPRTVLAAIQRFITKLEREQ 243 C++ L D L+ L VR+ + G R GC+FI +P ++ +QR+IT++ERE+ Sbjct: 198 CRMTLPDEGLLVANLCVRNKFDVTTRGGSRYVRVGCEFIALPGARMSMVQRYITRVERER 257 Query: 244 NAKASGM 250 A+ SGM Sbjct: 258 KARLSGM 264 >gb|EGW59601.1| YcgR family protein [Dechlorosoma suillum PS] Length = 270 Score = 152 bits (383), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 142/246 (57%), Gaps = 3/246 (1%) Query: 8 DDD--SPYRVRSRREIISLLTSMMEKNQLLSLMIKGGSESVITSILEVDADEDAITLDAA 65 DDD S Y + S+ EI+ +L ++++K ++++ GG+ ++TS+ + AD +++ D Sbjct: 24 DDDNYSRYLLYSKAEILFVLKALVQKGVMITVYFDGGNSFLLTSLNHIGADGNSLIFDYG 83 Query: 66 PSAMLNESIVSSKQIDFEAIYNSIRITFAVEGARQIEYQGRPALQVDIPESLVRLQRREF 125 +N + + ++ F + ++I F+++G Q ++GR A +PE+L+RLQRRE+ Sbjct: 84 SDDEMNRRALQADKLVFTTTLDKVKIQFSLKGLTQTTFEGRTAFGGKLPETLLRLQRREY 143 Query: 126 FRIPTPIAKPLRCTFRITQPDGSFVTVVTMLNNISAGGVGITDEKKLLSTTP-GVIYEDC 184 +R+ TPIA P++ + + DG+ T+ + +IS GG+G+ + T G ++ DC Sbjct: 144 YRLTTPIANPIKVSVDVILADGTKTTIEANMLDISGGGIGLMLPLSMGETFAIGNVFRDC 203 Query: 185 QLELGDNTLVSVKLQVRDCKEFKMTNGKIVNRFGCQFIDIPRTVLAAIQRFITKLEREQN 244 + L + + L VR+ G R GC+++D+P T L IQR+IT++ERE+ Sbjct: 204 KFTLPEEGQLVTALSVRNSFPVTTKTGSQYLRIGCEYVDLPGTRLTMIQRYITRIERERK 263 Query: 245 AKASGM 250 A+ SG+ Sbjct: 264 ARISGL 269 >ref|YP_002889870.1| type IV pilus assembly PilZ [Thauera sp. MZ1T] gb|ACR01493.1| type IV pilus assembly PilZ [Thauera sp. MZ1T] Length = 259 Score = 151 bits (382), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 81/244 (33%), Positives = 136/244 (55%) Query: 8 DDDSPYRVRSRREIISLLTSMMEKNQLLSLMIKGGSESVITSILEVDADEDAITLDAAPS 67 DD++ Y +R REI++++ +++ L+S + G+ESV+++++ V D ++ LD + Sbjct: 16 DDEAKYVLRDAREILAIVRNLLGARALVSARLAPGNESVLSTLVAVAEDGTSLLLDGSAD 75 Query: 68 AMLNESIVSSKQIDFEAIYNSIRITFAVEGARQIEYQGRPALQVDIPESLVRLQRREFFR 127 + N+ + + +D + +RI F + G R +E G P + +PE+L+RLQRREF+R Sbjct: 76 PLQNQRMERADALDCVTQLDKVRIQFLLRGQRLVEDGGSPGFRAPLPEALLRLQRREFYR 135 Query: 128 IPTPIAKPLRCTFRITQPDGSFVTVVTMLNNISAGGVGITDEKKLLSTTPGVIYEDCQLE 187 + TPI++ + CT + + DGS + +IS GGV I + PG + D L Sbjct: 136 LQTPISEGVSCTLALPRVDGSRREAELRILDISGGGVAIAVPPVGVHFEPGTEFPDSLLR 195 Query: 188 LGDNTLVSVKLQVRDCKEFKMTNGKIVNRFGCQFIDIPRTVLAAIQRFITKLEREQNAKA 247 L D +S +L VR+ G V R GC+F D+PR AIQR+I + ER +NA+ Sbjct: 196 LPDTAPISARLVVRNLFRITRRGGAEVLRAGCEFADLPRGAEDAIQRYILRAERTRNARE 255 Query: 248 SGMM 251 G + Sbjct: 256 RGRL 259 >ref|YP_004295235.1| YcgR family protein [Nitrosomonas sp. AL212] gb|ADZ27073.1| YcgR family protein [Nitrosomonas sp. AL212] Length = 261 Score = 151 bits (382), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 76/239 (31%), Positives = 139/239 (58%) Query: 8 DDDSPYRVRSRREIISLLTSMMEKNQLLSLMIKGGSESVITSILEVDADEDAITLDAAPS 67 + + +R+RS +I+ +L +M+ + L++L S+ ++TSIL +++D + +D + Sbjct: 23 EKNEKFRIRSEIDILFILRGIMQADSLITLYPDYESDFILTSILAINSDRKEMVIDYGIN 82 Query: 68 AMLNESIVSSKQIDFEAIYNSIRITFAVEGARQIEYQGRPALQVDIPESLVRLQRREFFR 127 + ++SK++ F N ++I F ++I + + A V+IPE+L+R+QRR FR Sbjct: 83 EKHCQKALNSKELVFVTTQNRVKIEFVCNQIKKIYFNNKDAFVVNIPETLLRIQRRNHFR 142 Query: 128 IPTPIAKPLRCTFRITQPDGSFVTVVTMLNNISAGGVGITDEKKLLSTTPGVIYEDCQLE 187 I TPI KPL+C I + + L +IS GG + D+ +++ PG+IY++CQ+ Sbjct: 143 ISTPIVKPLKCAIPIPGKNTTTSKAEVALLDISCGGTAVIDQHPIINFDPGIIYDNCQIM 202 Query: 188 LGDNTLVSVKLQVRDCKEFKMTNGKIVNRFGCQFIDIPRTVLAAIQRFITKLEREQNAK 246 L + ++V +QV++ E + NG+ R GCQFI++ + A IQR+I K E+ + K Sbjct: 203 LPEIGTINVTIQVKNTYEITLRNGQNCMRAGCQFINLAANMEAMIQRYIIKQEQMRKMK 261 >ref|YP_934214.1| hypothetical protein azo2711 [Azoarcus sp. BH72] sp|A1K922.1|YCGR_AZOSB RecName: Full=Flagellar brake protein YcgR; AltName: Full=Cyclic di-GMP binding protein YcgR emb|CAL95327.1| conserved hypothetical protein [Azoarcus sp. BH72] Length = 259 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 138/244 (56%) Query: 8 DDDSPYRVRSRREIISLLTSMMEKNQLLSLMIKGGSESVITSILEVDADEDAITLDAAPS 67 DD Y + REI +L +++ + L++ G +S +T+++ + D +I +DA P Sbjct: 16 DDFEKYLLYGSREIRQILQGLIDHHALITAQTVPGHQSFLTTVVALPDDGASIIIDAGPD 75 Query: 68 AMLNESIVSSKQIDFEAIYNSIRITFAVEGARQIEYQGRPALQVDIPESLVRLQRREFFR 127 +N+ + +++++ + + IRI F + Y+ RPA + +P L+RLQRREF+R Sbjct: 76 EHINQRVGNAERLVCMSQLDKIRIQFDLSAPALTRYENRPAFRAPVPAQLLRLQRREFYR 135 Query: 128 IPTPIAKPLRCTFRITQPDGSFVTVVTMLNNISAGGVGITDEKKLLSTTPGVIYEDCQLE 187 + TP+ + C + QPDG + + T + +IS GG+ + + + +E+C+L Sbjct: 136 LQTPVTHTVTCRIPLPQPDGRTLELETRVIDISGGGIAVVVPPDNVPFGADMEFENCKLT 195 Query: 188 LGDNTLVSVKLQVRDCKEFKMTNGKIVNRFGCQFIDIPRTVLAAIQRFITKLEREQNAKA 247 L + + V+L+VR+ NG + R GC+F+D+PR+ AIQR+I K+ER+++A+ Sbjct: 196 LPELGTIPVRLKVRNLFRLTNRNGVEMLRAGCEFVDLPRSADNAIQRYIFKVERDRSARE 255 Query: 248 SGMM 251 G + Sbjct: 256 RGRL 259