BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0054.p (778 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775450.1| flagellar hook-associated FlgK protein [Herb... 1527 0.0 ref|YP_001353117.1| flagellar hook-associated protein FlgK [Jant... 436 e-120 ref|YP_001100166.1| flagellar hook-associated protein FlgK [Herm... 406 e-111 ref|YP_004294767.1| flagellar hook-associated protein FlgK [Nitr... 394 e-107 ref|YP_004695393.1| flagellar hook-associated protein FlgK [Nitr... 390 e-106 ref|YP_003048377.1| flagellar hook-associated protein FlgK [Meth... 386 e-105 ref|ZP_08272761.1| Flagellar hook-associated protein flgK [Oxalo... 384 e-104 ref|YP_003050545.1| flagellar hook-associated protein FlgK [Meth... 381 e-103 ref|YP_004039215.1| flagellar hook-associated protein flgk [Meth... 379 e-103 ref|YP_546071.1| flagellar hook-associated protein FlgK [Methylo... 379 e-102 >ref|YP_003775450.1| flagellar hook-associated FlgK protein [Herbaspirillum seropedicae SmR1] emb|CAP19667.1| flagellar hook-filament junction protein 1 [Herbaspirillum seropedicae] gb|ADJ63542.1| flagellar hook-associated FlgK protein [Herbaspirillum seropedicae SmR1] Length = 778 Score = 1527 bits (3954), Expect = 0.0, Method: Compositional matrix adjust. Identities = 777/778 (99%), Positives = 777/778 (99%) Query: 1 MATNIFSIGQSALQAAMAAQATTSHNISNGKTPGYNRQEVVQSSAGGINYGYGFVGQGTQ 60 MATNIFSIGQSALQAAMAAQATTSHNISNGKTPGYNRQEVVQSSAGGINYGYGFVGQGTQ Sbjct: 1 MATNIFSIGQSALQAAMAAQATTSHNISNGKTPGYNRQEVVQSSAGGINYGYGFVGQGTQ 60 Query: 61 VNEIKRVYNDFLNKQALASQTSASSLDSYYSEISQINNMVADTKAGLSPALQDFFSAVQN 120 VNEIKRVYNDFLNKQALASQTSASSLDSYYSEISQINNMVADTKAGLSPALQDFFSAVQN Sbjct: 61 VNEIKRVYNDFLNKQALASQTSASSLDSYYSEISQINNMVADTKAGLSPALQDFFSAVQN 120 Query: 121 LASNPNTQASRQSVLSQASTLVARISSINDQLSSSSASVNSQITSTVTSINSFAQQISQL 180 LASNPNTQASRQSVLSQASTLVARISSINDQLSSSSASVNSQITSTVTSINSFAQQISQL Sbjct: 121 LASNPNTQASRQSVLSQASTLVARISSINDQLSSSSASVNSQITSTVTSINSFAQQISQL 180 Query: 181 NQAIVKAIGTGGGQPPNDLLDQRDQVISQLNKLVKITTVPQDTGSVSVFIGTGQSLVAGD 240 NQAIVKAIGTGGGQPPNDLLDQRDQVISQLNKLVKITTVPQDTGSVSVFIGTGQSLVAGD Sbjct: 181 NQAIVKAIGTGGGQPPNDLLDQRDQVISQLNKLVKITTVPQDTGSVSVFIGTGQSLVAGD 240 Query: 241 NVTQMVVTNSPTDVSRLQIGQAIPGGGTSTIPDSFFYDGGSLGGLLKYRSETLDPTQNAL 300 NVTQMVVTNSPTDVSRLQIGQAIPGGGTSTIPDSFFYDGGSLGGLLKYRSETLDPTQNAL Sbjct: 241 NVTQMVVTNSPTDVSRLQIGQAIPGGGTSTIPDSFFYDGGSLGGLLKYRSETLDPTQNAL 300 Query: 301 GRIAIAMGTAFNQQQKLGLDQNGNQGTALFNVSSPNLIGYPGNTGTTNLTTTITDPSALT 360 GRIAIAMGTAFNQQQKLGLDQNGNQGTALFNVSSPNLIGYPGNTGTTNLTTTITDPSALT Sbjct: 301 GRIAIAMGTAFNQQQKLGLDQNGNQGTALFNVSSPNLIGYPGNTGTTNLTTTITDPSALT 360 Query: 361 TSDYTLSYDGTNYTFTRLSDNTKTIKAPGAFPVTLDGVTYSNGAAAPGPFAPTMAAGNTY 420 TSDYTLSYDGTNYTFTRLSDNTKTIKAPGAFPVTLDGVTYSNGAAAPGPFAPTMAAGNTY Sbjct: 361 TSDYTLSYDGTNYTFTRLSDNTKTIKAPGAFPVTLDGVTYSNGAAAPGPFAPTMAAGNTY 420 Query: 421 KIQPTANGAAGFSLALNNTQLLATAAPIATSINATNNVNASMPASNTGNAIISNTSLDSS 480 KIQPTANGAAGFSLALNNTQLLATAAPIATSINATNNVNASMPASNTGNAIISNTSLDSS Sbjct: 421 KIQPTANGAAGFSLALNNTQLLATAAPIATSINATNNVNASMPASNTGNAIISNTSLDSS 480 Query: 481 QYQQGSSVSFTAALDASTPPKMQLSAAWTGAAPVPGVTVNYADGTTASVTGATPFDYKSG 540 QYQQGSSVSFTAALDASTPPKMQLSAAWTGAAPVPGVTVNYADGTTASVTGATPFDYKSG Sbjct: 481 QYQQGSSVSFTAALDASTPPKMQLSAAWTGAAPVPGVTVNYADGTTASVTGATPFDYKSG 540 Query: 541 MTITSGGVTYALTGSPAAGDKFNFAPVSANKGTPTISTGSVTPAYLTTTTPLTKPTTLTY 600 MTITSGGVTYALTGSPAAGDKFNFAPVSANKGT TISTGSVTPAYLTTTTPLTKPTTLTY Sbjct: 541 MTITSGGVTYALTGSPAAGDKFNFAPVSANKGTATISTGSVTPAYLTTTTPLTKPTTLTY 600 Query: 601 NSTAAPPVFNISPAVPAGGGTITHKDGTTTTIAGGATTLSYTAGDSYEISGVQFAISGQP 660 NSTAAPPVFNISPAVPAGGGTITHKDGTTTTIAGGATTLSYTAGDSYEISGVQFAISGQP Sbjct: 601 NSTAAPPVFNISPAVPAGGGTITHKDGTTTTIAGGATTLSYTAGDSYEISGVQFAISGQP 660 Query: 661 GNGDQFTIAANTNAASDNRNALAMGKLQTANTINGTSFQGSYSQLVATIGNKTNEINVTN 720 GNGDQFTIAANTNAASDNRNALAMGKLQTANTINGTSFQGSYSQLVATIGNKTNEINVTN Sbjct: 661 GNGDQFTIAANTNAASDNRNALAMGKLQTANTINGTSFQGSYSQLVATIGNKTNEINVTN 720 Query: 721 TAEKARLTAIQNQQQSESGVNQDEELAHMIQNQQQYQAAAKIIQAASDMINVLLSLGS 778 TAEKARLTAIQNQQQSESGVNQDEELAHMIQNQQQYQAAAKIIQAASDMINVLLSLGS Sbjct: 721 TAEKARLTAIQNQQQSESGVNQDEELAHMIQNQQQYQAAAKIIQAASDMINVLLSLGS 778 >ref|YP_001353117.1| flagellar hook-associated protein FlgK [Janthinobacterium sp. Marseille] gb|ABR88628.1| FlgK flagellar hook-associated protein [Janthinobacterium sp. Marseille] Length = 647 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 259/576 (44%), Positives = 360/576 (62%), Gaps = 47/576 (8%) Query: 3 TNIFSIGQSALQAAMAAQATTSHNISNGKTPGYNRQEVVQSSAGGINY-GYGFVGQGTQV 61 +N+ SI +S L AA A ATT HNI+N KTPGY+RQ V+QSS GG N G G++G GT V Sbjct: 2 SNLLSIAKSGLAAAQAGVATTGHNIANEKTPGYSRQLVIQSSLGGQNLTGGGYIGNGTNV 61 Query: 62 NEIKRVYNDFLNKQALASQTSASSLDSYYSEISQINNMVADTKAGLSPALQDFFSAVQNL 121 + +KR++NDFL Q +A+Q+S S LD+YY++++++NNM+AD+ GL+P +Q FF +Q+L Sbjct: 62 DSVKRIFNDFLAAQVVAAQSSTSQLDTYYAQMNKVNNMLADSSVGLAPVIQSFFKGIQDL 121 Query: 122 ASNPNTQASRQSVLSQASTLVARISSINDQLSSSSASVNSQITSTVTSINSFAQQISQLN 181 +NP +SRQ++LS A LV+R S++ QLSS A VN++IT VT+IN++A+QI+QLN Sbjct: 122 VNNPGGASSRQAMLSGAEALVSRFQSMDGQLSSMRAGVNNEITGAVTNINAYAKQIAQLN 181 Query: 182 QAIVKAIGTGGGQPPNDLLDQRDQVISQLNKLVKITTVPQDTGSVSVFIGTGQSLVAGDN 241 AI KA G GQPPNDLLDQRD ++++L K K++ V Q G +VFIG GQ LV G++ Sbjct: 182 DAIAKA-QNGSGQPPNDLLDQRDLLVAELAKQTKVSIV-QQAGDYNVFIGNGQPLVVGNS 239 Query: 242 VTQMVVTNSPTDVSRLQIGQAIPGGGTSTIPDSFFYDGGSLGGLLKYRSETLDPTQNALG 301 +V SPTD RL++G + G T TIP+S GG+LGGL +YRS++LDP QNALG Sbjct: 240 NYDLVTVTSPTDPGRLEVGY-VSNGTTYTIPESSL-TGGNLGGLFEYRSQSLDPIQNALG 297 Query: 302 RIAIAMGTAFNQQQKLGLDQNGNQGTALFNVSSPNLIGYPGNTGTTNLTTTITDPSALTT 361 RIA+ + FN Q KLG DQNGN G F+++SP + G NTG + +I++ ALTT Sbjct: 298 RIALGLAATFNAQHKLGQDQNGNLGGDFFSLASPAVTGSTKNTGNAQIGASISNVDALTT 357 Query: 362 SDYTLSYDGTNYTFTRLSDNTKTIKAPGAFPV-TLDGVTYSNGAAAPGPFAPTMAAGNTY 420 SDY LSYDGTNY TRLSDN ++ + FP T+DGV +S + TMA+G+ + Sbjct: 358 SDYRLSYDGTNYKVTRLSDNA-SMYSGATFPAGTIDGVDFS-------VTSGTMASGDEF 409 Query: 421 KIQPTANGAAGFSLALNNTQLLATAAPIATSINATNNVNASMPASNTGNAIISNTSLDSS 480 I+PT NGA+G ++ + + + +A A PI T P +NTG I Sbjct: 410 LIRPTVNGASGLNVLIKDVKEIAAATPIRT----------GAPTTNTGTGAI-------- 451 Query: 481 QYQQGSSVSFTAALDAS---TPPKMQLSAAWTGAAPVPG---VTVNYADGTTASVTGATP 534 S+ + T+A D S TP + +A P VTV +G + TP Sbjct: 452 -----SAGNITSAFDGSAVTTPVTLTYDSAANTLTGFPAGMPVTVT-TNGVPTTFPAGTP 505 Query: 535 FDYKSGMTITSGGVTYALTGSPAAGDKFNFAPVSAN 570 Y +G I+ GG ++G+PA GDKF +SAN Sbjct: 506 VTYTAGSVISFGGAEIKISGAPANGDKFT---ISAN 538 Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 98/210 (46%), Positives = 130/210 (61%), Gaps = 10/210 (4%) Query: 570 NKGTPTISTGSVTPAYLTTTTPLTKPTTLTYNSTAAPPVFNISPAVPAGGGTITHKDGTT 629 N GT IS G++T A+ + +T P TLTY+S A N PAG +G Sbjct: 445 NTGTGAISAGNITSAF--DGSAVTTPVTLTYDSAA-----NTLTGFPAGMPVTVTTNGVP 497 Query: 630 TTIAGGATTLSYTAGDSYEISGVQFAISGQPGNGDQFTIAANTNAASDNRNALAMGKLQT 689 TT G T ++YTAG G + ISG P NGD+FTI+ANTN DNRN LA+G+LQT Sbjct: 498 TTFPAG-TPVTYTAGSVISFGGAEIKISGAPANGDKFTISANTNGDGDNRNMLALGELQT 556 Query: 690 ANTING--TSFQGSYSQLVATIGNKTNEINVTNTAEKARLTAIQNQQQSESGVNQDEELA 747 N + G S+ +YSQLV+ +GNKT E+ + +E A L +Q QQSESGVN DEE Sbjct: 557 KNVLQGGTASYNSAYSQLVSLVGNKTRELQTNSASEGALLKQMQTAQQSESGVNLDEEAT 616 Query: 748 HMIQNQQQYQAAAKIIQAASDMINVLLSLG 777 ++++ QQ YQA+ K++QA SDM +VL+SLG Sbjct: 617 NLLRYQQAYQASGKVMQAVSDMFDVLISLG 646 >ref|YP_001100166.1| flagellar hook-associated protein FlgK [Herminiimonas arsenicoxydans] emb|CAL62042.1| putative flagellar hook-associated protein 1 FlgK-like [Herminiimonas arsenicoxydans] Length = 659 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 253/579 (43%), Positives = 348/579 (60%), Gaps = 41/579 (7%) Query: 3 TNIFSIGQSALQAAMAAQATTSHNISNGKTPGYNRQEVVQSSAGGINYGYGFVGQGTQVN 62 +N+ SI +S L AA A ATT HNI+N TPGY+RQ V+Q+S GG N G G++G GT V Sbjct: 2 SNLLSIAKSGLAAAHAGIATTGHNIANQATPGYSRQLVIQASLGGQNIGGGYIGNGTNVE 61 Query: 63 EIKRVYNDFLNKQALASQTSASSLDSYYSEISQINNMVADTKAGLSPALQDFFSAVQNLA 122 ++R+YNDFL Q +++Q+S S LD+YY +I+++NNM+AD GLSP + DFF +Q+L Sbjct: 62 TVRRIYNDFLGAQVVSAQSSKSQLDTYYMQINKVNNMLADPSVGLSPVIADFFKGIQDLV 121 Query: 123 SNPNTQASRQSVLSQASTLVARISSINDQLSSSSASVNSQITSTVTSINSFAQQISQLNQ 182 +NP SRQ++LS A LVAR S++ QL+ VNS+I VT+IN++A+QI QLN Sbjct: 122 ANPGIAPSRQAMLSGAEALVARFQSLDGQLTGMRNGVNSEIAGAVTNINAYAKQIGQLND 181 Query: 183 AIVKAIGTGGGQPPNDLLDQRDQVISQLNKLVKITTVPQDTGSVSVFIGTGQSLVAGDNV 242 AI KA G GQPPNDLLDQRD +I +L K K+T V QD G+ +VFIG GQ LV G + Sbjct: 182 AISKA-QNGSGQPPNDLLDQRDLLIGELAKQSKVTLVQQD-GNYNVFIGNGQPLVVGLST 239 Query: 243 TQMVVTNSPTDVSRLQIGQAIPGGGTSTIPDSFFYDGGSLGGLLKYRSETLDPTQNALGR 302 ++ S TD R+Q+G I G T +P+S GG+LGGL +YRS+TLDP QN+LGR Sbjct: 240 YELTAVPSSTDPGRMQVGY-IANGKTVILPESSL-TGGNLGGLFEYRSKTLDPIQNSLGR 297 Query: 303 IAIAMGTAFNQQQKLGLDQNGNQGTALFNVSSPNLIGYPGNTGTTNLTTTITDPSALTTS 362 IA+ + + FN+Q +LG DQNG G FN+++P + NTG + TI LTTS Sbjct: 298 IALGLASTFNEQHRLGQDQNGKFGGDFFNMATPQISSSKENTGNAKIDATINSVDKLTTS 357 Query: 363 DYTLSYDGTNYTFTRLSDNTKTIKAPGAFPVT---LDGVTYSNGAAAPGPFAPTMAAGNT 419 DY LSYDG+NYT TRLSDN + FP T +DG+++S + A TMAAG+ Sbjct: 358 DYRLSYDGSNYTVTRLSDNVAISASNMDFPATPIEMDGISFSMDTSVG---AGTMAAGDE 414 Query: 420 YKIQPTANGAAGFSLALNNTQLLATAAPIATSINATNNVNASMPASNTGNAIISNTSLDS 479 + I+PT NGA+G S+ + + + +A PI T + P +NTG IS ++++ Sbjct: 415 FIIKPTINGASGLSVLIKDIKQIAAGTPIRT----------NAPIANTGTGAISAGTINA 464 Query: 480 SQYQQGSSVSFTAALDASTPPKMQLSAAWTGAAPVPG---VTVNYADGTTASVTGATP-- 534 F A A+ P + AA + P VTVN GT A P Sbjct: 465 ---------GFDAVTAAALPVDLIYDAAANTFSGFPAGMDVTVNVG-GTKTVYPAALPPA 514 Query: 535 ---FDYKSGMTITSGGVTYALTGSPAAGDKFNFAPVSAN 570 Y +G ++ GG ++G+PA GD F+ +SAN Sbjct: 515 ETTVPYTAGAIVSFGGAEIKISGTPADGDTFS---ISAN 550 Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 94/219 (42%), Positives = 126/219 (57%), Gaps = 13/219 (5%) Query: 565 APVSANKGTPTISTGSVTPAYLTTTTPLTKPTTLTYNSTAAPPVFNISPAVPAGGGTITH 624 AP+ AN GT IS G++ + T P L Y++ A N PAG + Sbjct: 447 API-ANTGTGAISAGTINAGF-DAVTAAALPVDLIYDAAA-----NTFSGFPAGMDVTVN 499 Query: 625 KDGTTTT----IAGGATTLSYTAGDSYEISGVQFAISGQPGNGDQFTIAANTNAASDNRN 680 GT T + TT+ YTAG G + ISG P +GD F+I+ANTN DNRN Sbjct: 500 VGGTKTVYPAALPPAETTVPYTAGAIVSFGGAEIKISGTPADGDTFSISANTNGDGDNRN 559 Query: 681 ALAMGKLQTANTING--TSFQGSYSQLVATIGNKTNEINVTNTAEKARLTAIQNQQQSES 738 L +G+LQT N + G S+ +YSQLV+ +GNKT E+ + AE A L +Q QQSES Sbjct: 560 MLLLGELQTKNVLQGGTASYNSAYSQLVSQVGNKTRELETNSLAEGALLKQMQTAQQSES 619 Query: 739 GVNQDEELAHMIQNQQQYQAAAKIIQAASDMINVLLSLG 777 GVN DEE ++++ QQ YQA+ K++QA SDM +VL+SLG Sbjct: 620 GVNLDEEATNLLRYQQAYQASGKVMQAVSDMFDVLISLG 658 >ref|YP_004294767.1| flagellar hook-associated protein FlgK [Nitrosomonas sp. AL212] gb|ADZ26605.1| flagellar hook-associated protein FlgK [Nitrosomonas sp. AL212] Length = 638 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 241/573 (42%), Positives = 336/573 (58%), Gaps = 51/573 (8%) Query: 1 MATNIFSIGQSALQAAMAAQATTSHNISNGKTPGYNRQEVVQSSAGGINYGYGFVGQGTQ 60 M I IG S L A TTSHNISN TPGYNRQ+V+ ++ + G GFVG+G Sbjct: 1 MGNGILDIGISGLLTAQNQLLTTSHNISNVATPGYNRQQVILNTNTPQSSGAGFVGRGVH 60 Query: 61 VNEIKRVYNDFLNKQALASQTSASSLDSYYSEISQINNMVADTKAGLSPALQDFFSAVQN 120 ++R+YN FL Q+L QT + SLDS++++I Q+++M+ DT +GLSPALQ+FFSA+Q+ Sbjct: 61 STTVQRIYNQFLVNQSLQIQTQSQSLDSHFAQIKQLDDMLGDTTSGLSPALQNFFSALQD 120 Query: 121 LASNPNTQASRQSVLSQASTLVARISSINDQLSSSSASVNSQITSTVTSINSFAQQISQL 180 +ASNP+ SRQ+++S L AR S++ ++S +N+Q+TS V +NS A Q++++ Sbjct: 121 VASNPSVIPSRQAMISNGEALAARFQSMDQRMSQMREDINAQVTSIVVEVNSLAGQLAKI 180 Query: 181 NQAIVKAIGTGGGQPPNDLLDQRDQVISQLNKLVKITTVPQDTGSVSVFIGTGQSLVAGD 240 NQ I A G GGQP ND+LDQRD++I++L+KL+ T+ + GSVS+F+G GQ+LV G Sbjct: 181 NQQITLAEGASGGQPANDMLDQRDELINRLSKLINTDTIRESNGSVSIFVGNGQALVVGS 240 Query: 241 NVTQMVVTNSPTDVSRLQIGQAIPGGGTSTIPDSFFYDGGSLGGLLKYRSETLDPTQNAL 300 V + SP D S L +G I T I + GG LGGLL +RSETLD QNAL Sbjct: 241 QVLSLKAIQSPDDPSDLTLG-LISRNNTIQIHEDQIT-GGVLGGLLSFRSETLDNAQNAL 298 Query: 301 GRIAIAMGTAFNQQQKLGLDQNGNQGTALFNVSSPNLIGYPGNTGTTNLTTTITDPSALT 360 GRIAI + +FN+Q +LG+D NG+ G F V SP +I N +N+T +I+D ALT Sbjct: 299 GRIAITLAHSFNEQHQLGVDLNGDMGENFFTVPSPKVISALTNNPASNITASISDHGALT 358 Query: 361 TSDYTLSYDGTNYTFTRLSDNT--KTIKAP-GAFPVTLDGVTYSNGAAAPGPFAPTMAAG 417 TSDY SYDGTNYT TRLSDNT T+ AP G P+ LDG++ + GA T+ Sbjct: 359 TSDYQFSYDGTNYTLTRLSDNTSVSTLVAPSGGAPLVLDGISVT-GA--------TILTN 409 Query: 418 NTYKIQPTANGAAGFSLALNNTQLLATAAPIATSINATNNVNASMPASNTGNAIISNTSL 477 ++IQPT NGA ++ + +T +A AAP N NA++ +NTG IS ++ Sbjct: 410 ERFRIQPTVNGAKDIAVNIADTTKIAAAAP--------NRTNAAV--TNTGTGKISAGTV 459 Query: 478 D----SSQYQQGSSVSFTAALDASTPPKMQLSAAWTGAAPVPGVTVNYADGTTASVTGAT 533 + QQ +++F A D Q GA +P AT Sbjct: 460 NPLPLDPNLQQPLTITFHAPYDG------QYDVTGIGAG-LP----------------AT 496 Query: 534 PFDYKSGMTITSGGVTYALTGSPAAGDKFNFAP 566 Y G I+ G T+ ++G+PAAGD F P Sbjct: 497 NQAYTEGADISFNGYTFQISGNPAAGDIFTITP 529 Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 120/329 (36%), Positives = 166/329 (50%), Gaps = 49/329 (14%) Query: 463 PASNTGNAIISNTSLDSSQYQ---QGSSVSFTAALDASTPPKMQLSAAWTGAAPVPGVTV 519 PASN +I + +L +S YQ G++ + T D ++ + A +G AP+ Sbjct: 343 PASNITASISDHGALTTSDYQFSYDGTNYTLTRLSDNTSVSTL---VAPSGGAPL----- 394 Query: 520 NYADGTTASVTGATPF---DYKSGMTITSG---GVTYALTGSPAAGDKFNFAPVSANKGT 573 DG SVTGAT ++ T+ V A T AA N GT Sbjct: 395 -VLDGI--SVTGATILTNERFRIQPTVNGAKDIAVNIADTTKIAAAAPNRTNAAVTNTGT 451 Query: 574 PTISTGSVTPAYLTTTTPLTKPTTLTYNSTAAPPVFNISPAVPAGGGTITHKDG--TTTT 631 IS G+V P L L +P T+T++ AP DG T Sbjct: 452 GKISAGTVNPLPLDPN--LQQPLTITFH---AP------------------YDGQYDVTG 488 Query: 632 IAGG--ATTLSYTAGDSYEISGVQFAISGQPGNGDQFTIAANTNAASDNRNALAMGKLQT 689 I G AT +YT G +G F ISG P GD FTI N N ++DNRNAL +G LQT Sbjct: 489 IGAGLPATNQAYTEGADISFNGYTFQISGNPAAGDIFTITPNLNGSADNRNALLLGALQT 548 Query: 690 ANTI-NGT-SFQGSYSQLVATIGNKTNEINVTNTAEKARLTAIQNQQQSESGVNQDEELA 747 NT+ NGT S+Q +Y QLV+ IGNKT E+ VT+ ++ L I+N QS SGVN DEE A Sbjct: 549 KNTVENGTASYQSAYGQLVSQIGNKTRELEVTSKSQANFLAQIENTIQSTSGVNLDEEAA 608 Query: 748 HMIQNQQQYQAAAKIIQAASDMINVLLSL 776 ++++ QQ YQAA+KII+ ++ + + +L + Sbjct: 609 NLMRFQQAYQAASKIIEMSNTLFDSILRI 637 >ref|YP_004695393.1| flagellar hook-associated protein FlgK [Nitrosomonas sp. Is79A3] gb|AEJ01994.1| flagellar hook-associated protein FlgK [Nitrosomonas sp. Is79A3] Length = 638 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 239/573 (41%), Positives = 330/573 (57%), Gaps = 51/573 (8%) Query: 1 MATNIFSIGQSALQAAMAAQATTSHNISNGKTPGYNRQEVVQSSAGGINYGYGFVGQGTQ 60 M I IG + L A TTSHNISN TPGY RQ+VV S+ + G GFVG+G Sbjct: 1 MGNGILDIGITGLLTAQNQLLTTSHNISNADTPGYKRQQVVLSTNIPQSSGAGFVGRGVH 60 Query: 61 VNEIKRVYNDFLNKQALASQTSASSLDSYYSEISQINNMVADTKAGLSPALQDFFSAVQN 120 ++R+YN F+ Q+L QT + +LDSY+ +I Q++NM+ D+ +GLSPALQ+FFSA+Q+ Sbjct: 61 STTVQRIYNQFVVSQSLQIQTQSQALDSYFGQIKQLDNMLGDSTSGLSPALQNFFSAIQD 120 Query: 121 LASNPNTQASRQSVLSQASTLVARISSINDQLSSSSASVNSQITSTVTSINSFAQQISQL 180 +A+NP+ SRQ+++S LVAR S++ ++S +N+QITSTV +NS A+QI+ + Sbjct: 121 VATNPSVIPSRQAMISNGEALVARFQSMDQRMSQIREDINTQITSTVDDVNSLAKQIADI 180 Query: 181 NQAIVKAIGTGGGQPPNDLLDQRDQVISQLNKLVKITTVPQDTGSVSVFIGTGQSLVAGD 240 N I+ A G GGQP ND+ DQRD++ISQLNK+V TV Q GSV+V++G GQ+LV G Sbjct: 181 NHQILLAEGAAGGQPANDMQDQRDELISQLNKIVNADTVRQSDGSVNVYVGNGQALVVGA 240 Query: 241 NVTQMVVTNSPTDVSRLQIGQAIPGGGTSTIPDSFFYDGGSLGGLLKYRSETLDPTQNAL 300 SP + L I I G T +P+ GG+L G+L +RS TLD QNAL Sbjct: 241 QTLSFKAIVSPDNPDNLTIA-LITGNNTVQLPEDQIT-GGTLNGILSFRSVTLDSAQNAL 298 Query: 301 GRIAIAMGTAFNQQQKLGLDQNGNQGTALFNVSSPNLIGYPGNTGTTNLTTTITDPSALT 360 GRIAI + FN Q +LG+D NG+ G FN+ P +I N +N+T I+D S LT Sbjct: 299 GRIAITLAQTFNAQHQLGMDLNGDMGGDFFNLPPPKVISALNNNPASNITAGISDYSVLT 358 Query: 361 TSDYTLSYDGTNYTFTRLSDNTK---TIKAPGAFPVTLDGVTYSNGAAAPGPFAPTMAAG 417 TSDY SYDGTNYT TR SDNT T+ GA P+TLDGV+ + A T+ A Sbjct: 359 TSDYQFSYDGTNYTLTRSSDNTSVSTTVAPSGALPLTLDGVSVT---------AATILAN 409 Query: 418 NTYKIQPTANGAAGFSLALNNTQLLATAAPIATSINATNNVNASMPASNTGNAIISNTSL 477 ++IQPT NGA ++ +++T +A A P N NA++ +NTG IS ++ Sbjct: 410 ERFRIQPTINGAKDIAVNISDTTKIAAAGP--------NRTNAAI--TNTGTGKISAGTV 459 Query: 478 D----SSQYQQGSSVSFTAALDASTPPKMQLSAAWTGAAPVPGVTVNYADGTTASVTGAT 533 + S QQ +++F TP + G V G+ A Sbjct: 460 NPLPLDSNLQQPLTITF------HTP--------YDGQYDVVGIGTGLPAANQA------ 499 Query: 534 PFDYKSGMTITSGGVTYALTGSPAAGDKFNFAP 566 Y +G I+ G T+ ++GSPAAGD F AP Sbjct: 500 ---YIAGTDISFNGYTFQISGSPAAGDIFTIAP 529 Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 87/214 (40%), Positives = 120/214 (56%), Gaps = 29/214 (13%) Query: 570 NKGTPTISTGSVTPAYLTTTTPLTKPTTLTYNSTAAPPVFNISPAVPAGGGTITHKDGTT 629 N GT IS G+V P L + L +P T+T++ T DG Sbjct: 448 NTGTGKISAGTVNPLPLDSN--LQQPLTITFH---------------------TPYDGQY 484 Query: 630 TTIAGG----ATTLSYTAGDSYEISGVQFAISGQPGNGDQFTIAANTNAASDNRNALAMG 685 + G A +Y AG +G F ISG P GD FTIA N N ++DNRNAL +G Sbjct: 485 DVVGIGTGLPAANQAYIAGTDISFNGYTFQISGSPAAGDIFTIAPNLNGSADNRNALLLG 544 Query: 686 KLQTANTI-NGT-SFQGSYSQLVATIGNKTNEINVTNTAEKARLTAIQNQQQSESGVNQD 743 LQT NTI NGT S+Q +Y QLV+ IGNKT E+ VT+ A+ L +N QS SGVN D Sbjct: 545 VLQTKNTIENGTASYQSAYGQLVSQIGNKTRELEVTSKAQATLLKQTENTMQSVSGVNLD 604 Query: 744 EELAHMIQNQQQYQAAAKIIQAASDMINVLLSLG 777 EE A++++ QQ YQA++K+I+ ++ + + +L +G Sbjct: 605 EEAANLMRFQQAYQASSKVIEISNTLFDSILRIG 638 >ref|YP_003048377.1| flagellar hook-associated protein FlgK [Methylotenera mobilis JLW8] gb|ACT47850.1| flagellar hook-associated protein FlgK [Methylotenera mobilis JLW8] Length = 657 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 228/575 (39%), Positives = 347/575 (60%), Gaps = 37/575 (6%) Query: 1 MATNIFSIGQSALQAAMAAQATTSHNISNGKTPGYNRQEVVQSSAGGINYGYGFVGQGTQ 60 MA+NI +IG+SAL AA +TT HNI+N TPGY+RQ VVQ++A N+GYGFVGQGT+ Sbjct: 1 MASNILNIGKSALAAAQVGISTTGHNIANASTPGYSRQVVVQAAAQSQNFGYGFVGQGTE 60 Query: 61 VNEIKRVYNDFLNKQALASQTSASSLDSYYSEISQINNMVADTKAGLSPALQDFFSAVQN 120 + + R++ND L QA+ SQ+++SS ++Y S+++ IN+M++++ AGL+PA+ DFF AVQ Sbjct: 61 IASVTRIFNDILAAQAVRSQSNSSSANTYLSQMTSINDMLSNSTAGLNPAMSDFFGAVQK 120 Query: 121 LASNPNTQASRQSVLSQASTLVARISSINDQLSSSSASVNSQITSTVTSINSFAQQISQL 180 L++NP+ +RQS+LS A +L +R + N++L+ SVN+Q+TS+V +N++A+QI+ L Sbjct: 121 LSANPSDIPTRQSMLSYAQSLASRFQTTNNRLNEIRDSVNTQLTSSVGLVNTYAKQIASL 180 Query: 181 NQAIVKAIGTGGGQPPNDLLDQRDQVISQLNKLVKITTVPQDTGSVSVFIGTGQSLVAGD 240 N I K+I + G PNDL+DQRDQ++ +L+K +K T V Q G +V++G G LV G Sbjct: 181 NDVIEKSI-SANGSTPNDLMDQRDQLVLELSKQIKTTVVSQGQGGYNVYVGNGLPLVVGK 239 Query: 241 NVTQMVVTNSPTDVSRLQIGQAIPGGGTSTIPDSFFYDGGSLGGLLKYRSETLDPTQNAL 300 ++ T SPTD SRL++ A +T+ + GG +GGLL++R+E+LD QN + Sbjct: 240 ETFNLLTTPSPTDPSRLEV--AYQSSSKTTVLGANSLPGGVIGGLLQFRAESLDAVQNQI 297 Query: 301 GRIAIAMGTAFNQQQKLGLDQNGNQGTALFNVSSPNL---------IGYPGNTGTTNLTT 351 G+IA+ +G FN Q G D +G G+ALFN++ P + P N + Sbjct: 298 GQIAVVLGNTFNSQLMQGYDLDGTLGSALFNIAEPVVNSSALNSGPTTTPANASPAEVAA 357 Query: 352 TITDPSALTTSDYTLSYDGTNYTFTRLSDNTKTIKAPGAFPVTLDGVTYSNGAAAPGPFA 411 I D ALTTSDY L +DGTNY+ TRLSDNT + + P +DG+T S Sbjct: 358 KIVDAKALTTSDYKLLFDGTNYSVTRLSDNTT--QNFSSLPANIDGLTISQTTG------ 409 Query: 412 PTMAAGNTYKIQPTANGAAGFSLALNNTQLLATAAPIATSINATNNVNASMPASNTGNAI 471 TM AG+++ I+PT N A F+LA+ + + LA I +S S +NTG A Sbjct: 410 -TMLAGDSFLIKPTQNAATKFTLAITDARKLAIGGSILSS---------SANVANTGTAS 459 Query: 472 ISNTSLDSSQYQQGSSVSFTAALDASTPPKMQLSAAWTGAAPVPGVTVNYADGTTASVTG 531 IS+ + DS+ + F +A P + TG VTV ++GT+ + Sbjct: 460 ISSPAADSTYASSPIASPFNITYNAGAPNTL------TGFIATEPVTVT-SNGTSVTYAA 512 Query: 532 ATPFDYKSGMTITSGGVTYALTGSPAAGDKFNFAP 566 P + +G TI++ G+++ ++G+P GD+F P Sbjct: 513 GAPVTFVNGATISTAGMSFTISGTPNNGDQFTVTP 547 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/212 (39%), Positives = 123/212 (58%), Gaps = 9/212 (4%) Query: 569 ANKGTPTISTGSVTPAYLTTTTPLTKPTTLTYNSTAAPPVFNISPAVPAGGGTITHKDGT 628 AN GT +IS+ + Y ++P+ P +TYN+ A + P T+T +GT Sbjct: 453 ANTGTASISSPAADSTY--ASSPIASPFNITYNAGAPNTLTGFIATEPV---TVTS-NGT 506 Query: 629 TTTIAGGATTLSYTAGDSYEISGVQFAISGQPGNGDQFTIAANT-NAASDNRNALAMGKL 687 + T A GA +++ G + +G+ F ISG P NGDQFT+ N+ DN N L + KL Sbjct: 507 SVTYAAGAP-VTFVNGATISTAGMSFTISGTPNNGDQFTVTPNSVTGPGDNTNGLLLAKL 565 Query: 688 QTANTING-TSFQGSYSQLVATIGNKTNEINVTNTAEKARLTAIQNQQQSESGVNQDEEL 746 Q A+TI G S+ ++ Q+V +GNKT E+ + + +E L I Q+ESGVN DEE Sbjct: 566 QNADTITGNKSYSDAFGQMVNGVGNKTRELGILSVSEGQVLEQINASVQAESGVNLDEEA 625 Query: 747 AHMIQNQQQYQAAAKIIQAASDMINVLLSLGS 778 ++I+ QQ YQAA K++Q AS + +VLL LG+ Sbjct: 626 TNLIRYQQAYQAAGKMMQIASQLFDVLLQLGT 657 >ref|ZP_08272761.1| Flagellar hook-associated protein flgK [Oxalobacteraceae bacterium IMCC9480] gb|EGF33760.1| Flagellar hook-associated protein flgK [Oxalobacteraceae bacterium IMCC9480] Length = 644 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 238/571 (41%), Positives = 335/571 (58%), Gaps = 57/571 (9%) Query: 4 NIFSIGQSALQAAMAAQATTSHNISNGKTPGYNRQEVVQSSAGGINYGYGFVGQGTQVNE 63 NI S+GQS L AA TT HNI+N TPGY+RQ V+Q+SAGG + G GFVGQGT V Sbjct: 3 NILSVGQSGLLAAQLGVTTTGHNIANAATPGYSRQVVIQTSAGGQSSGDGFVGQGTTVAS 62 Query: 64 IKRVYNDFLNKQALASQTSASSLDSYYSEISQINNMVADTKAGLSPALQDFFSAVQNLAS 123 I+R+Y+ + + A+QTS +SLD+Y +++SQINN++AD+ GLSP L +FF+ VQ LA+ Sbjct: 63 IQRIYDAYTATRVNAAQTSKASLDAYSTQVSQINNLLADSSTGLSPTLSNFFNNVQGLAA 122 Query: 124 NPNTQASRQSVLSQASTLVARISSINDQLSSSSASVNSQITSTVTSINSFAQQISQLNQA 183 PN A RQ++LS +L AR S++ QLS VN+QI S V SIN++ QQI++LN A Sbjct: 123 APNGSAQRQTLLSAGESLAARFQSLDSQLSQIGEGVNAQIVSNVGSINAYGQQIAKLNDA 182 Query: 184 IVKAIGTGGGQPPNDLLDQRDQVISQLNKLVKITTVPQDTGSVSVFIGTGQSLVAGDNVT 243 I KA GG PPNDLLDQRDQ++S+L+KLVK+T Q +V IG GQ +V G Sbjct: 183 IEKASSGAGGAPPNDLLDQRDQIVSELSKLVKVTVDNQAGSGYNVSIGNGQPIVVGTTTF 242 Query: 244 QMVVTNSPTDVSRLQIGQAIPGGGTSTIPDSFFYDGGSLGGLLKYRSETLDPTQNALGRI 303 + + S TD S+L + G ++PDS GG+LGGLL +R+ +LDP +N LGR+ Sbjct: 243 ALSIATSQTDASKLVVAYQ-SGSTLLSLPDSSI-SGGTLGGLLDFRTNSLDPARNELGRV 300 Query: 304 AIAMGTAFNQQQKLGLDQNGNQGTALFNVS----SPNLIGYPGNTGTTNLTTTITDPSAL 359 A+ + T+FN+Q KLG+DQNG G F V+ SP+ + N + + TD ++L Sbjct: 301 AVGLATSFNEQSKLGVDQNGIAGKDFFKVAGPLVSPSKLNSASNPAISATIASSTDAASL 360 Query: 360 TTSDYTLSYDGTNYTFTRLSDNTKTIKAPGAFPVT---LDGVTYSNGAAAPGPFAPTMAA 416 T SDY+++YDG NYT TRLSD K GAFP T +DG+T+S G TMAA Sbjct: 361 TASDYSVAYDGINYTITRLSD--KFSAYTGAFPPTVGPVDGITFSVGTG-------TMAA 411 Query: 417 GNTYKIQPTANGAAGFSLALNNTQLLATAAPIATSINATNNVNASMPASNTGNAIISNTS 476 +++ ++PT + A ++ L +T T I A V + +N GN IS S Sbjct: 412 NSSFLVRPTISAAGSIAVKLTDT----------TEIAAAAPVVLAATGTNGGNGKISAGS 461 Query: 477 LDSSQYQQGSSVSFTAALDASTPPKMQLSAAWTGAAPVPGVTVNYADGTTASVTGA--TP 534 +D+S +TPP + L + +++GT +V + TP Sbjct: 462 VDASFL--------------TTPPALPLK-------------LKFSNGTFDTVPASLTTP 494 Query: 535 FDYKSGMTITSGGVTYALTGSPAAGDKFNFA 565 Y SG +T G+++ +TG+P GD F A Sbjct: 495 ISYTSGANVTLNGISFNITGAPLEGDTFTIA 525 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/219 (38%), Positives = 120/219 (54%), Gaps = 37/219 (16%) Query: 570 NKGTPTISTGSVTPAYLTTTTPLTKPTTLTYNSTAAPPVFNISPAVPAGGGTITHKDGTT 629 N G IS GSV ++LTT PA+P + +GT Sbjct: 451 NGGNGKISAGSVDASFLTT-----------------------PPALPL---KLKFSNGTF 484 Query: 630 TTIAGGATT-LSYTAGDSYEISGVQFAISGQPGNGDQFTIAANTN--AASDNRNALAMGK 686 T+ TT +SYT+G + ++G+ F I+G P GD FTIAANT+ A DNRN +A+G Sbjct: 485 DTVPASLTTPISYTSGANVTLNGISFNITGAPLEGDTFTIAANTSGVATGDNRNVVALGA 544 Query: 687 LQTANTING--------TSFQGSYSQLVATIGNKTNEINVTNTAEKARLTAIQNQQQSES 738 LQT N + G T+ G++ +V +GNKT E+ +E + ++ QQS+S Sbjct: 545 LQTKNLLVGVGAANTPSTTLAGAFGLMVNNVGNKTREVMANAASEGKLVDSVLAIQQSQS 604 Query: 739 GVNQDEELAHMIQNQQQYQAAAKIIQAASDMINVLLSLG 777 GVN DEE +++++ QQ YQAA KI+Q AS + +VLLSLG Sbjct: 605 GVNLDEEASNLLRYQQAYQAAGKIMQTASTLFDVLLSLG 643 >ref|YP_003050545.1| flagellar hook-associated protein FlgK [Methylovorus glucosetrophus SIP3-4] gb|ACT50018.1| flagellar hook-associated protein FlgK [Methylovorus glucosetrophus SIP3-4] Length = 647 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 238/568 (41%), Positives = 343/568 (60%), Gaps = 32/568 (5%) Query: 1 MATNIFSIGQSALQAAMAAQATTSHNISNGKTPGYNRQEVVQSSAGGINYGYGFVGQGTQ 60 M ++I +IG+SAL AA + T +NISN + GYNRQ + QS+A N G+G++G+GTQ Sbjct: 1 MGSDILNIGKSALNAAQIGISVTGNNISNASSAGYNRQVISQSAAASQNVGFGYLGKGTQ 60 Query: 61 VNEIKRVYNDFLNKQALASQTSASSLDSYYSEISQINNMVADTKAGLSPALQDFFSAVQN 120 V I+RVY+ L KQ SQ +S L +Y S+IS INNM+AD+ AGLSPALQDFF +VQ+ Sbjct: 61 VTSIERVYSALLAKQVNVSQARSSELSTYSSQISSINNMLADSSAGLSPALQDFFDSVQD 120 Query: 121 LASNPNTQASRQSVLSQASTLVARISSINDQLSSSSASVNSQITSTVTSINSFAQQISQL 180 L +NP + +SRQ++LS + L +R S++ +L+ SVNSQ+ S+ + +NS+AQQI+ L Sbjct: 121 LTNNPGSASSRQAMLSSSEALASRFQSLSSRLTEMENSVNSQLRSSTSLVNSYAQQIASL 180 Query: 181 NQAIVKAIGTGGGQPPNDLLDQRDQVISQLNKLVKITTVPQDTGSVSVFIGTGQSLVAGD 240 N +I A+G G+ PNDL+DQRD ++S+++ +K TT+ Q S +VF+G G LV Sbjct: 181 NDSINNAMG-ATGKTPNDLMDQRDLLVSKMSSQIK-TTIVQSGNSYNVFVGNGLPLVVDK 238 Query: 241 NVTQMVVTNSPTDVSRLQIGQAIPG-GGTSTIPDSFFYDGGSLGGLLKYRSETLDPTQNA 299 + V NSPTD +RL++ A G GGT I GG+LGGL+++R+ +LD T+N Sbjct: 239 ESYSLSVVNSPTDSTRLEV--AYSGKGGTPIILGENSVTGGTLGGLVQFRNHSLDTTKNQ 296 Query: 300 LGRIAIAMGTAFNQQQKLGLDQNGNQGTALFNVSSPNLIGYPGNTGTTNLTTTITDPSAL 359 LG+IAI++ FN QQKLGLD NGN G FN SP + NTG LT + TD SA+ Sbjct: 297 LGQIAISLTETFNAQQKLGLDLNGNAGVNYFNTISPTIKSNGNNTGNAVLTGSFTDASAV 356 Query: 360 TTSDYTLSYD-GTNYTFTRLSDNTKTIKAPGAFPVTLDGVTYSNGAAAPGPFAPTMAAGN 418 TTSDYTL+Y+ GTNY+ RLSD T T + P+T+DGV+ S + TM++G+ Sbjct: 357 TTSDYTLTYNGGTNYSVKRLSDGTTTNYT--SMPITIDGVSISVSSG-------TMSSGD 407 Query: 419 TYKIQPTANGAAGFSLALNNTQLLATAAPIATSINATNNVNASMPASNTGNAIISNTSLD 478 + IQPTA+ A S+++ T +A A+P+ A+ +SNTG+ ISN +++ Sbjct: 408 NFLIQPTADAARQISVSITGTDQIAAASPLI----------AAKSSSNTGSGAISNLTVN 457 Query: 479 SSQYQQGSSVSFTAALDASTPPKMQLSAAWTGAAPVPGVTVNYADGTTASVTGATPFDYK 538 S+ S + T ++ T G VTV + GTT + Y Sbjct: 458 SAYMGSPFSSALTLTYNSGT-------GTLNGFPATEAVTVKTSSGTTTTYAAGAAVPYT 510 Query: 539 SGMTITSGGVTYALTGSPAAGDKFNFAP 566 +G T T G ++ + G+P GD F P Sbjct: 511 AGATYTVAGASFTMGGTPNNGDSFTLTP 538 Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 110/310 (35%), Positives = 168/310 (54%), Gaps = 46/310 (14%) Query: 504 LSAAWTGAAPV--PGVTVNYADGTTASV---TGATPFDYKSGMTITSGGVTYALT-GSPA 557 L+ ++T A+ V T+ Y GT SV + T +Y S M IT GV+ +++ G+ + Sbjct: 346 LTGSFTDASAVTTSDYTLTYNGGTNYSVKRLSDGTTTNYTS-MPITIDGVSISVSSGTMS 404 Query: 558 AGDKFNFAPV----------------------------SANKGTPTISTGSVTPAYLTTT 589 +GD F P S+N G+ IS +V AY+ + Sbjct: 405 SGDNFLIQPTADAARQISVSITGTDQIAAASPLIAAKSSSNTGSGAISNLTVNSAYMGS- 463 Query: 590 TPLTKPTTLTYNSTAAPPVFNISPAVPAGGGTITHKDGTTTTIAGGATT-LSYTAGDSYE 648 P + TLTYNS N PA A +T K + TT A + YTAG +Y Sbjct: 464 -PFSSALTLTYNS--GTGTLNGFPATEA----VTVKTSSGTTTTYAAGAAVPYTAGATYT 516 Query: 649 ISGVQFAISGQPGNGDQFTIAANTNAAS-DNRNALAMGKLQTANTING-TSFQGSYSQLV 706 ++G F + G P NGD FT+ +T ++S +N NAL + KLQTA+T++G S++ +++Q+V Sbjct: 517 VAGASFTMGGTPNNGDSFTLTPSTGSSSGNNTNALLLAKLQTASTVSGNKSYEAAFAQIV 576 Query: 707 ATIGNKTNEINVTNTAEKARLTAIQNQQQSESGVNQDEELAHMIQNQQQYQAAAKIIQAA 766 + +GNKT+E+ VT AE L Q + +S SGVN DEE A++++ QQ YQAAAK++Q A Sbjct: 577 SAVGNKTSELQVTGAAEATLLEQAQAEMESNSGVNLDEEAANLLRYQQSYQAAAKVMQIA 636 Query: 767 SDMINVLLSL 776 S M + L+++ Sbjct: 637 SQMFDTLINI 646 >ref|YP_004039215.1| flagellar hook-associated protein flgk [Methylovorus sp. MP688] gb|ADQ83979.1| flagellar hook-associated protein FlgK [Methylovorus sp. MP688] Length = 647 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 237/568 (41%), Positives = 343/568 (60%), Gaps = 32/568 (5%) Query: 1 MATNIFSIGQSALQAAMAAQATTSHNISNGKTPGYNRQEVVQSSAGGINYGYGFVGQGTQ 60 M ++I +IG+SAL AA + T +NISN + GYNRQ + QS+A N G+G++G+GTQ Sbjct: 1 MGSDILNIGKSALNAAQIGISVTGNNISNASSAGYNRQVISQSAAASQNVGFGYLGKGTQ 60 Query: 61 VNEIKRVYNDFLNKQALASQTSASSLDSYYSEISQINNMVADTKAGLSPALQDFFSAVQN 120 V I+RVY+ L KQ SQ +S L +Y S+I+ INNM+AD+ AGLSPALQDFF +VQ+ Sbjct: 61 VTSIERVYSALLAKQVNVSQARSSELSTYSSQINSINNMLADSSAGLSPALQDFFDSVQD 120 Query: 121 LASNPNTQASRQSVLSQASTLVARISSINDQLSSSSASVNSQITSTVTSINSFAQQISQL 180 L +NP + +SRQ++LS + L +R S++ +L+ SVNSQ+ S+ + +NS+AQQI+ L Sbjct: 121 LTNNPGSASSRQAMLSSSEALASRFQSLSSRLTEMENSVNSQLRSSTSLVNSYAQQIASL 180 Query: 181 NQAIVKAIGTGGGQPPNDLLDQRDQVISQLNKLVKITTVPQDTGSVSVFIGTGQSLVAGD 240 N +I A+G G+ PNDL+DQRD ++S+++ +K TT+ Q S +VF+G G LV Sbjct: 181 NDSINNAMG-ATGKTPNDLMDQRDLLVSKMSSQIK-TTIVQSGNSYNVFVGNGLPLVVDK 238 Query: 241 NVTQMVVTNSPTDVSRLQIGQAIPG-GGTSTIPDSFFYDGGSLGGLLKYRSETLDPTQNA 299 + V NSPTD +RL++ A G GGT I GG+LGGL+++R+ +LD T+N Sbjct: 239 ESYSLSVVNSPTDSTRLEV--AYSGKGGTPIILGENSVTGGTLGGLVQFRNHSLDTTKNQ 296 Query: 300 LGRIAIAMGTAFNQQQKLGLDQNGNQGTALFNVSSPNLIGYPGNTGTTNLTTTITDPSAL 359 LG+IAI++ FN QQKLGLD NGN G FN SP + NTG LT + TD SA+ Sbjct: 297 LGQIAISLTETFNAQQKLGLDLNGNAGVNYFNTISPTIKSNGNNTGNAVLTGSFTDASAV 356 Query: 360 TTSDYTLSYD-GTNYTFTRLSDNTKTIKAPGAFPVTLDGVTYSNGAAAPGPFAPTMAAGN 418 TTSDYTL+Y+ GTNY+ RLSD T T + P+T+DGV+ S + TM++G+ Sbjct: 357 TTSDYTLTYNGGTNYSVKRLSDGTTTNYT--SMPITIDGVSISVSSG-------TMSSGD 407 Query: 419 TYKIQPTANGAAGFSLALNNTQLLATAAPIATSINATNNVNASMPASNTGNAIISNTSLD 478 + IQPTA+ A S+++ T +A A+P+ A+ +SNTG+ ISN +++ Sbjct: 408 NFLIQPTADAARQISVSITGTDQIAAASPLI----------AAKSSSNTGSGAISNLTVN 457 Query: 479 SSQYQQGSSVSFTAALDASTPPKMQLSAAWTGAAPVPGVTVNYADGTTASVTGATPFDYK 538 S+ S + T ++ T G VTV + GTT + Y Sbjct: 458 SAYMGSPFSSALTLTYNSGT-------GTLNGFPATEAVTVKTSSGTTTTYAAGAAVPYT 510 Query: 539 SGMTITSGGVTYALTGSPAAGDKFNFAP 566 +G T T G ++ + G+P GD F P Sbjct: 511 AGATYTVAGASFTMGGTPNNGDSFTLTP 538 Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 110/310 (35%), Positives = 168/310 (54%), Gaps = 46/310 (14%) Query: 504 LSAAWTGAAPV--PGVTVNYADGTTASV---TGATPFDYKSGMTITSGGVTYALT-GSPA 557 L+ ++T A+ V T+ Y GT SV + T +Y S M IT GV+ +++ G+ + Sbjct: 346 LTGSFTDASAVTTSDYTLTYNGGTNYSVKRLSDGTTTNYTS-MPITIDGVSISVSSGTMS 404 Query: 558 AGDKFNFAPV----------------------------SANKGTPTISTGSVTPAYLTTT 589 +GD F P S+N G+ IS +V AY+ + Sbjct: 405 SGDNFLIQPTADAARQISVSITGTDQIAAASPLIAAKSSSNTGSGAISNLTVNSAYMGS- 463 Query: 590 TPLTKPTTLTYNSTAAPPVFNISPAVPAGGGTITHKDGTTTTIAGGATT-LSYTAGDSYE 648 P + TLTYNS N PA A +T K + TT A + YTAG +Y Sbjct: 464 -PFSSALTLTYNS--GTGTLNGFPATEA----VTVKTSSGTTTTYAAGAAVPYTAGATYT 516 Query: 649 ISGVQFAISGQPGNGDQFTIAANTNAAS-DNRNALAMGKLQTANTING-TSFQGSYSQLV 706 ++G F + G P NGD FT+ +T ++S +N NAL + KLQTA+T++G S++ +++Q+V Sbjct: 517 VAGASFTMGGTPNNGDSFTLTPSTGSSSGNNTNALLLAKLQTASTVSGNKSYEAAFAQIV 576 Query: 707 ATIGNKTNEINVTNTAEKARLTAIQNQQQSESGVNQDEELAHMIQNQQQYQAAAKIIQAA 766 + +GNKT+E+ VT AE L Q + +S SGVN DEE A++++ QQ YQAAAK++Q A Sbjct: 577 SAVGNKTSELQVTGAAEATLLEQAQAEMESNSGVNLDEEAANLLRYQQSYQAAAKVMQIA 636 Query: 767 SDMINVLLSL 776 S M + L+++ Sbjct: 637 SQMFDTLINI 646 >ref|YP_546071.1| flagellar hook-associated protein FlgK [Methylobacillus flagellatus KT] gb|ABE50230.1| Flagellar hook-associated protein [Methylobacillus flagellatus KT] Length = 645 Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust. Identities = 227/569 (39%), Positives = 346/569 (60%), Gaps = 32/569 (5%) Query: 3 TNIFSIGQSALQAAMAAQATTSHNISNGKTPGYNRQEVVQSSAGGINYGYGFVGQGTQVN 62 +NIF+IG++AL AA +TT HNI+N T GY+RQ +VQS+ +G+G++G GTQV+ Sbjct: 2 SNIFNIGKTALNAAQVGISTTGHNIANANTEGYSRQVIVQSAGQAQAWGFGYLGNGTQVD 61 Query: 63 EIKRVYNDFLNKQALASQTSASSLDSYYSEISQINNMVADTKAGLSPALQDFFSAVQNLA 122 +KRVYN+ L++Q SQ+ AS +++ S I+ INNM+AD +AGLSPA+QDFF+++ +L+ Sbjct: 62 TVKRVYNELLSRQISNSQSIASGINTQLSNINHINNMLADAEAGLSPAIQDFFASINDLS 121 Query: 123 SNPNTQASRQSVLSQASTLVARISSINDQLSSSSASVNSQITSTVTSINSFAQQISQLNQ 182 S PN ASRQ++LS A L +R + + +L SVN+Q+ ++V ++N +A++I++LN+ Sbjct: 122 SAPNDPASRQAMLSTAEALSSRFNGLGSRLLEMQGSVNAQLNASVNTVNHYAKEIARLNE 181 Query: 183 AIVKAIGTGGGQPPNDLLDQRDQVISQLNKLVKITTVPQDTGSVSVFIGTGQSLVAGDNV 242 I A T GQPPNDLLDQRDQ++ LNK +K T + QD +V IG G LV G Sbjct: 182 VIDVAT-TSTGQPPNDLLDQRDQLVLALNKEIKGTVIVQDGNRYNVSIGNGIPLVNGLKS 240 Query: 243 TQMVVTNSPTDVSRLQIGQAIPGGGTSTIPDSFFYDGGSLGGLLKYRSETLDPTQNALGR 302 + +SPT+ RL++ A G T++I GG +GGL++YR E+LD QN LG+ Sbjct: 241 YSLTTVDSPTNPGRLEV--AYQAGATTSILAEQSLQGGVIGGLIEYRRESLDKAQNTLGQ 298 Query: 303 IAIAMGTAFNQQQKLGLDQNGNQGTALFNVSSPNLIGYPGNTGTTNLTTTITDPSALTTS 362 IA+A+ +FN Q + GL QG FN+ SP + NTG+ +L ++I D S LT S Sbjct: 299 IAVALAQSFNIQHQQGLTNGDVQGGNFFNIPSPQVNASSHNTGSADLASSIVDASLLTAS 358 Query: 363 DYTLSYDGTNYTFTRLSDNTKTIKAPGAFPVTLDGVTYSNGAAAPGPFAPTMAAGNTYKI 422 DY L YDG+NY+ TRLSDN T++ + P T+DGV++S +M+AG+ + I Sbjct: 359 DYRLRYDGSNYSITRLSDN--TVQTFSSLPQTVDGVSFSLAGG-------SMSAGDQFMI 409 Query: 423 QPTANGAAGFSLALNNTQLLATAAPIATSINATNNVNASMPASNTGNAIISNTSLDSSQY 482 +PTAN AA S+A+ + +A AP T+ A SNTG+ +IS + +S Sbjct: 410 RPTANAAADLSVAVKQIEDIAAGAPTITTTAA---------GSNTGSGVISGARVSASY- 459 Query: 483 QQGSSVSFTAALDASTPPKMQLSAAWTGAAPV-PGVTVNYADGTTASVTGATPFDYKSGM 541 A+ ++P + ++ G P +TV + GTT + + Y +G Sbjct: 460 ---------ASSPLASPFTLSYNSGSLGGFPAGEPITVTTSAGTTTTYPAGSTIPYSAGA 510 Query: 542 TITSGGVTYALTGSPAAGDKFNFAPVSAN 570 I+ G++++L+G+PA GD+F A ++N Sbjct: 511 AISVAGISFSLSGAPADGDQFTIAATTSN 539 Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 100/266 (37%), Positives = 142/266 (53%), Gaps = 42/266 (15%) Query: 544 TSGGVTYALTG-SPAAGDKFNFAPVS-----------------------------ANKGT 573 T GV+++L G S +AGD+F P + +N G+ Sbjct: 388 TVDGVSFSLAGGSMSAGDQFMIRPTANAAADLSVAVKQIEDIAAGAPTITTTAAGSNTGS 447 Query: 574 PTISTGSVTPAYLTTTTPLTKPTTLTYNSTAAPPVFNISPAVPAGGGTITHKDGTTTTIA 633 IS V+ +Y ++PL P TL+YNS + PAG TTT Sbjct: 448 GVISGARVSASY--ASSPLASPFTLSYNSGSLG-------GFPAGEPITVTTSAGTTTTY 498 Query: 634 GGATTLSYTAGDSYEISGVQFAISGQPGNGDQFTIAANT-NAASDNRNALAMGKLQTANT 692 +T+ Y+AG + ++G+ F++SG P +GDQFTIAA T NAA DNRNAL + LQ T Sbjct: 499 PAGSTIPYSAGAAISVAGISFSLSGAPADGDQFTIAATTSNAAGDNRNALQLAALQNTKT 558 Query: 693 ING--TSFQGSYSQLVATIGNKTNEINVTNTAEKARLTAIQNQQQSESGVNQDEELAHMI 750 + G S+QG+++QLV+ +GN+T E+ VT AE L QQ ESGVN DEE ++I Sbjct: 559 MLGGTASYQGTFNQLVSYVGNRTRELQVTGAAENTLLAQSITAQQGESGVNLDEEAVNLI 618 Query: 751 QNQQQYQAAAKIIQAASDMINVLLSL 776 + QQ YQAA K++Q AS + +LS+ Sbjct: 619 RYQQAYQAAGKVMQIASTLFETVLSI 644