BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0043.p (105 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775439.1| anti-sigma-28 factor protein [Herbaspirillum... 199 1e-49 ref|YP_001100177.1| negative regulator of flagellin synthesis (p... 75 3e-12 ref|ZP_08272750.1| Negative regulator of flagellin synthesis [Ox... 72 2e-11 ref|YP_001353106.1| negative regulator of flagellin synthesis [J... 70 2e-10 ref|YP_003674660.1| anti-sigma-28 factor FlgM [Methylotenera ver... 67 7e-10 ref|YP_003048388.1| anti-sigma-28 factor FlgM [Methylotenera mob... 67 1e-09 >ref|YP_003775439.1| anti-sigma-28 factor protein [Herbaspirillum seropedicae SmR1] gb|ADJ63531.1| anti-sigma-28 factor protein [Herbaspirillum seropedicae SmR1] Length = 121 Score = 199 bits (506), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 103/105 (98%), Positives = 103/105 (98%) Query: 1 VNVNDALKSAALNTEQTQAQPRNNAQAGATAGNNAASSTASDSVRLSATYHSLETKVSSS 60 VNVNDALKSAALNTEQTQAQPRNNAQAGATAGNNAASS ASDSVRLSATY SLETKVSSS Sbjct: 17 VNVNDALKSAALNTEQTQAQPRNNAQAGATAGNNAASSAASDSVRLSATYQSLETKVSSS 76 Query: 61 SGSFDAKKVAEIKAAIANGTFQIDADKVANGLIDTVKTLINARRA 105 SGSFDAKKVAEIKAAIANGTFQIDADKVANGLIDTVKTLINARRA Sbjct: 77 SGSFDAKKVAEIKAAIANGTFQIDADKVANGLIDTVKTLINARRA 121 >ref|YP_001100177.1| negative regulator of flagellin synthesis (partial) [Herminiimonas arsenicoxydans] emb|CAL62053.1| putative negative regulator of flagellin synthesis (Anti-sigma-28 factor) FlgM-like [Herminiimonas arsenicoxydans] Length = 102 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 49/107 (45%), Positives = 70/107 (65%), Gaps = 9/107 (8%) Query: 1 VNVNDALKSAA---LNTEQTQAQPRNNAQAGATAGNNAASSTASDSVRLSATYHSLETKV 57 + ++D+ K A ++T QT+A AGA++ S S +V LS +L ++V Sbjct: 1 MKIDDSSKKTAGIGVSTTQTRAGKGTEKAAGASS-----SKAPSANVTLSTQVQALTSQV 55 Query: 58 SSSSGSFDAKKVAEIKAAIANGTFQIDADKVANGLIDTVKTLINARR 104 SS+S FD KKV EIKAAIA G FQ++A++VA+GL+DTVK LI+ARR Sbjct: 56 SSAS-VFDTKKVEEIKAAIAGGQFQVNAERVADGLMDTVKDLISARR 101 >ref|ZP_08272750.1| Negative regulator of flagellin synthesis [Oxalobacteraceae bacterium IMCC9480] gb|EGF33749.1| Negative regulator of flagellin synthesis [Oxalobacteraceae bacterium IMCC9480] Length = 99 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/105 (40%), Positives = 68/105 (64%), Gaps = 8/105 (7%) Query: 1 VNVNDALK-SAALNTEQTQAQPRNNAQAGATAGNNAASSTASDSVRLSATYHSLETKVSS 59 + ++D+ K + A+ T A + ++ GA +++ SDSV++SA +L Sbjct: 1 MKIDDSFKKTGAVGVSSTPA--KASSSKGAEKTEAVSTAATSDSVKISAQAQAL-----G 53 Query: 60 SSGSFDAKKVAEIKAAIANGTFQIDADKVANGLIDTVKTLINARR 104 + +FD KKV EIKAAIA+GTFQ++ +KVANGLIDTVK L+++R+ Sbjct: 54 GTSTFDVKKVNEIKAAIASGTFQVNPEKVANGLIDTVKDLLSSRK 98 >ref|YP_001353106.1| negative regulator of flagellin synthesis [Janthinobacterium sp. Marseille] gb|ABR91412.1| negative regulator of flagellin synthesis [Janthinobacterium sp. Marseille] Length = 128 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/105 (45%), Positives = 67/105 (63%), Gaps = 9/105 (8%) Query: 1 VNVNDALKS-AALNTEQTQAQPRNNAQAGATAGNNAASSTASDSVRLSATYHSLETKVSS 59 V +NDA K A + TQ + AG A A + S +V LS+ +L ++V+S Sbjct: 31 VKINDASKKIAGVGVAATQTR------AG-KAPEKADTGKVSSNVTLSSQVQALTSQVAS 83 Query: 60 SSGSFDAKKVAEIKAAIANGTFQIDADKVANGLIDTVKTLINARR 104 +S FDAKKV EIKAAIA G FQ++A++VA+GL+DTVK LI+ R+ Sbjct: 84 AS-VFDAKKVDEIKAAIAGGQFQVNAERVADGLMDTVKDLISTRK 127 >ref|YP_003674660.1| anti-sigma-28 factor FlgM [Methylotenera versatilis 301] gb|ADI30083.1| anti-sigma-28 factor, FlgM [Methylotenera versatilis 301] Length = 106 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 47/110 (42%), Positives = 69/110 (62%), Gaps = 10/110 (9%) Query: 1 VNVNDALK-SAALNTEQTQAQP-----RNNAQAGATAGNNAASSTASDSVRLSATYHSLE 54 + +ND++K +A L+ ++ A NAQA +A S T S LSA SLE Sbjct: 1 MKINDSIKNTAGLSVDKPGAGKLGSANSKNAQASQVDAKSAESVTLS---PLSAQLKSLE 57 Query: 55 TKVSSSSGSFDAKKVAEIKAAIANGTFQIDADKVANGLIDTVKTLINARR 104 KVS+SS FD +KV IK+AIANG F++D++KVA+GLI +VK L++ ++ Sbjct: 58 EKVSASS-VFDTEKVEAIKSAIANGQFKVDSEKVADGLISSVKDLLSTQK 106 >ref|YP_003048388.1| anti-sigma-28 factor FlgM [Methylotenera mobilis JLW8] gb|ACT47861.1| anti-sigma-28 factor, FlgM [Methylotenera mobilis JLW8] Length = 112 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/113 (41%), Positives = 74/113 (65%), Gaps = 9/113 (7%) Query: 1 VNVNDALKSAA-LNTEQTQAQPRNNAQAGA----TAGNNAASSTASDSV---RLSATYHS 52 + +N+++K+AA L ++ + N A+ A AG +A+S +AS +V LSA + Sbjct: 1 MKINESIKNAAGLGLDKASIEKANAAKVEADAKQKAGKSASSESASGNVTLSPLSAKLQT 60 Query: 53 LETKVSSSSGSFDAKKVAEIKAAIANGTFQIDADKVANGLIDTVKTLINARRA 105 LETKV +S+ +D +KV IK+AIANG F ++++KVA GLI+TVK L+ +R A Sbjct: 61 LETKVKASN-VYDTEKVDAIKSAIANGQFSVNSEKVAEGLIETVKDLLTSRFA 112