BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0033.p (201 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775429.1| chemotaxis protein [Herbaspirillum seropedic... 413 e-114 ref|ZP_08274888.1| Chemotaxis protein CheD [Oxalobacteraceae bac... 343 1e-92 ref|YP_315374.1| chemoreceptor glutamine deamidase CheD [Thiobac... 336 9e-91 ref|YP_001353782.1| chemoreceptor glutamine deamidase CheD [Jant... 333 6e-90 ref|YP_546039.1| chemoreceptor glutamine deamidase CheD [Methylo... 325 2e-87 ref|YP_001099604.1| chemoreceptor glutamine deamidase CheD [Herm... 325 3e-87 ref|YP_003050592.1| chemoreceptor glutamine deamidase CheD [Meth... 317 5e-85 ref|YP_003673859.1| CheD [Methylotenera versatilis 301] >gi|2972... 317 6e-85 ref|YP_003048684.1| chemoreceptor glutamine deamidase CheD [Meth... 314 6e-84 ref|YP_003777604.1| chemoreceptor glutamine deamidase [Herbaspir... 313 1e-83 >ref|YP_003775429.1| chemotaxis protein [Herbaspirillum seropedicae SmR1] gb|ADJ63521.1| chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 201 Score = 413 bits (1062), Expect = e-114, Method: Compositional matrix adjust. Identities = 201/201 (100%), Positives = 201/201 (100%) Query: 1 MSQASEQIASNLYYDRTFDCDAAKILPGEYYFTTKDMMIVTVLGSCVSACIRDRVSGIGG 60 MSQASEQIASNLYYDRTFDCDAAKILPGEYYFTTKDMMIVTVLGSCVSACIRDRVSGIGG Sbjct: 1 MSQASEQIASNLYYDRTFDCDAAKILPGEYYFTTKDMMIVTVLGSCVSACIRDRVSGIGG 60 Query: 61 MNHFMLPDGGGDDGSPVSASARYGTYAMEVLINDVLKSGARRENLEAKVFGGGNVLRGFS 120 MNHFMLPDGGGDDGSPVSASARYGTYAMEVLINDVLKSGARRENLEAKVFGGGNVLRGFS Sbjct: 61 MNHFMLPDGGGDDGSPVSASARYGTYAMEVLINDVLKSGARRENLEAKVFGGGNVLRGFS 120 Query: 121 AINVGERNAEFVRRYLKAENIRVVAEDLNDIYPRKVYFFPRTGKVLVKKLKQMHNNTLVD 180 AINVGERNAEFVRRYLKAENIRVVAEDLNDIYPRKVYFFPRTGKVLVKKLKQMHNNTLVD Sbjct: 121 AINVGERNAEFVRRYLKAENIRVVAEDLNDIYPRKVYFFPRTGKVLVKKLKQMHNNTLVD 180 Query: 181 REKAYASKLVTKPVGGEVDLF 201 REKAYASKLVTKPVGGEVDLF Sbjct: 181 REKAYASKLVTKPVGGEVDLF 201 >ref|ZP_08274888.1| Chemotaxis protein CheD [Oxalobacteraceae bacterium IMCC9480] gb|EGF31639.1| Chemotaxis protein CheD [Oxalobacteraceae bacterium IMCC9480] Length = 202 Score = 343 bits (879), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 162/196 (82%), Positives = 182/196 (92%) Query: 6 EQIASNLYYDRTFDCDAAKILPGEYYFTTKDMMIVTVLGSCVSACIRDRVSGIGGMNHFM 65 EQ A+N+YYDRTFDCDAAKILPGEY+FT KDM+IVTVLGSCVSACIRDRVSGIGGMNHFM Sbjct: 7 EQFATNVYYDRTFDCDAAKILPGEYFFTPKDMLIVTVLGSCVSACIRDRVSGIGGMNHFM 66 Query: 66 LPDGGGDDGSPVSASARYGTYAMEVLINDVLKSGARRENLEAKVFGGGNVLRGFSAINVG 125 LP GG D SPVSAS RYGTYAMEVLIN++LK+GARRENLEAKVFGGGNVLRGF AINVG Sbjct: 67 LPYGGTDIDSPVSASMRYGTYAMEVLINELLKAGARRENLEAKVFGGGNVLRGFIAINVG 126 Query: 126 ERNAEFVRRYLKAENIRVVAEDLNDIYPRKVYFFPRTGKVLVKKLKQMHNNTLVDREKAY 185 ERNA+FVR YLK ENIRV+AEDLNDI+PRKVY+FPR+GKVLVKKLKQ++NNTLV+RE+ Y Sbjct: 127 ERNAQFVREYLKMENIRVIAEDLNDIHPRKVYYFPRSGKVLVKKLKQLNNNTLVNREQDY 186 Query: 186 ASKLVTKPVGGEVDLF 201 A++L + PV G+VDLF Sbjct: 187 ATRLQSAPVSGDVDLF 202 >ref|YP_315374.1| chemoreceptor glutamine deamidase CheD [Thiobacillus denitrificans ATCC 25259] sp|Q3SIF9.1|CHED_THIDA RecName: Full=Probable chemoreceptor glutamine deamidase CheD gb|AAZ97569.1| CheD, stimulates methylation of MCP proteins [Thiobacillus denitrificans ATCC 25259] Length = 202 Score = 336 bits (862), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 158/200 (79%), Positives = 180/200 (90%) Query: 2 SQASEQIASNLYYDRTFDCDAAKILPGEYYFTTKDMMIVTVLGSCVSACIRDRVSGIGGM 61 S EQ+A+NLYYDR FDC+ AKILPGEYYFT K M+IVTVLGSCV+ACIRDRVSGIGGM Sbjct: 3 SAIEEQLATNLYYDRNFDCETAKILPGEYYFTAKPMLIVTVLGSCVAACIRDRVSGIGGM 62 Query: 62 NHFMLPDGGGDDGSPVSASARYGTYAMEVLINDVLKSGARRENLEAKVFGGGNVLRGFSA 121 NHFMLPDGGGD G+P+SAS RYG YAMEVLIN +LK+GARRENLEAKVFGGGNVLRGF+ Sbjct: 63 NHFMLPDGGGDPGNPLSASMRYGAYAMEVLINQLLKAGARRENLEAKVFGGGNVLRGFTT 122 Query: 122 INVGERNAEFVRRYLKAENIRVVAEDLNDIYPRKVYFFPRTGKVLVKKLKQMHNNTLVDR 181 +NVGERNA+FVR +L+AENIRVVAEDLND++PRKVYFFPRTG+VLVKKLKQ++N TLV R Sbjct: 123 MNVGERNAQFVRDFLRAENIRVVAEDLNDVHPRKVYFFPRTGRVLVKKLKQLNNYTLVKR 182 Query: 182 EKAYASKLVTKPVGGEVDLF 201 E+ YAS+L + V GEVDLF Sbjct: 183 EQDYASRLKSNVVAGEVDLF 202 >ref|YP_001353782.1| chemoreceptor glutamine deamidase CheD [Janthinobacterium sp. Marseille] sp|A6SZT5.1|CHED_JANMA RecName: Full=Probable chemoreceptor glutamine deamidase CheD gb|ABR88351.1| chemotaxis protein [Janthinobacterium sp. Marseille] Length = 203 Score = 333 bits (855), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 156/202 (77%), Positives = 185/202 (91%), Gaps = 1/202 (0%) Query: 1 MSQAS-EQIASNLYYDRTFDCDAAKILPGEYYFTTKDMMIVTVLGSCVSACIRDRVSGIG 59 MS+ + E A+N+YYDRTFD DAAKILPGEYY+T KDM+IVTVLGSCVSACIRDRV+G+G Sbjct: 1 MSELTKEHFATNVYYDRTFDRDAAKILPGEYYYTGKDMLIVTVLGSCVSACIRDRVTGVG 60 Query: 60 GMNHFMLPDGGGDDGSPVSASARYGTYAMEVLINDVLKSGARRENLEAKVFGGGNVLRGF 119 GMNHFMLPDGGGD SP+SASARYGTYAME+LIND+LK+GARRENLEAKVFGGGNVL GF Sbjct: 61 GMNHFMLPDGGGDADSPISASARYGTYAMEILINDLLKAGARRENLEAKVFGGGNVLSGF 120 Query: 120 SAINVGERNAEFVRRYLKAENIRVVAEDLNDIYPRKVYFFPRTGKVLVKKLKQMHNNTLV 179 S+INVGERNA+FVR +LK ENIR+VAEDLND++PRKVY+FPR GKVLVKKL+Q++NNTLV Sbjct: 121 SSINVGERNAQFVRNFLKVENIRIVAEDLNDVHPRKVYYFPRNGKVLVKKLRQLNNNTLV 180 Query: 180 DREKAYASKLVTKPVGGEVDLF 201 +RE+ YA++L + V G+V+LF Sbjct: 181 NREQDYANRLQSGSVSGDVELF 202 >ref|YP_546039.1| chemoreceptor glutamine deamidase CheD [Methylobacillus flagellatus KT] sp|Q1GZY9.1|CHED_METFK RecName: Full=Probable chemoreceptor glutamine deamidase CheD gb|ABE50198.1| CheD [Methylobacillus flagellatus KT] Length = 203 Score = 325 bits (834), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 151/197 (76%), Positives = 177/197 (89%), Gaps = 1/197 (0%) Query: 6 EQIASNLYYDRTFDCDAAKILPGEYYFTTKDMMIVTVLGSCVSACIRDRVSGIGGMNHFM 65 EQ+A+NLY+D+TF+C+AAKILPGEYY T +D++IVTVLGSCVSACIRD+VSGIGGMNHFM Sbjct: 7 EQLATNLYFDKTFNCEAAKILPGEYYTTNQDIVIVTVLGSCVSACIRDKVSGIGGMNHFM 66 Query: 66 LPDGG-GDDGSPVSASARYGTYAMEVLINDVLKSGARRENLEAKVFGGGNVLRGFSAINV 124 LP+G D +PVS SARYGTYAMEVLIN +LK+GARRENLEAK+FGGGNVL GF+AIN+ Sbjct: 67 LPEGNPADANNPVSESARYGTYAMEVLINQLLKNGARRENLEAKIFGGGNVLSGFTAINI 126 Query: 125 GERNAEFVRRYLKAENIRVVAEDLNDIYPRKVYFFPRTGKVLVKKLKQMHNNTLVDREKA 184 GE+NA FVR+YL+ ENIRVV EDLNDIYPRKVYFFPRTG+VLVKKLKQMHNNTL+ RE++ Sbjct: 127 GEKNAAFVRKYLRDENIRVVGEDLNDIYPRKVYFFPRTGRVLVKKLKQMHNNTLISREES 186 Query: 185 YASKLVTKPVGGEVDLF 201 YA +L V GEV+LF Sbjct: 187 YAKRLKANKVAGEVELF 203 >ref|YP_001099604.1| chemoreceptor glutamine deamidase CheD [Herminiimonas arsenicoxydans] sp|A4G4P0.1|CHED_HERAR RecName: Full=Probable chemoreceptor glutamine deamidase CheD emb|CAL61477.1| Chemotaxis protein CheD [Herminiimonas arsenicoxydans] Length = 203 Score = 325 bits (832), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 151/196 (77%), Positives = 178/196 (90%) Query: 6 EQIASNLYYDRTFDCDAAKILPGEYYFTTKDMMIVTVLGSCVSACIRDRVSGIGGMNHFM 65 E A+N+YYDRTFD DAAKILPGEYY+T KDM+IVTVLGSCVSACIRDRV+G+GGMNHFM Sbjct: 7 EHFATNVYYDRTFDRDAAKILPGEYYYTGKDMLIVTVLGSCVSACIRDRVTGVGGMNHFM 66 Query: 66 LPDGGGDDGSPVSASARYGTYAMEVLINDVLKSGARRENLEAKVFGGGNVLRGFSAINVG 125 LPD G D SPVSASARYGTYAMEVLIND+LK+GA+RENLEAKVFGGG VLRGF A+NVG Sbjct: 67 LPDSGADADSPVSASARYGTYAMEVLINDLLKAGAKRENLEAKVFGGGAVLRGFIAMNVG 126 Query: 126 ERNAEFVRRYLKAENIRVVAEDLNDIYPRKVYFFPRTGKVLVKKLKQMHNNTLVDREKAY 185 ERNA+FVR +LK E IR++AEDLNDI+PRKVY+FPR+GKVLVKKLKQ++NNTLV+RE+ Y Sbjct: 127 ERNAQFVRDFLKVEGIRIIAEDLNDIHPRKVYYFPRSGKVLVKKLKQLNNNTLVNREQDY 186 Query: 186 ASKLVTKPVGGEVDLF 201 A++L + V G+++LF Sbjct: 187 ANRLQSNNVAGDIELF 202 >ref|YP_003050592.1| chemoreceptor glutamine deamidase CheD [Methylovorus glucosetrophus SIP3-4] ref|YP_004039265.1| ched, stimulates methylation of mcp protein [Methylovorus sp. MP688] gb|ACT50065.1| CheD, stimulates methylation of MCP protein [Methylovorus glucosetrophus SIP3-4] gb|ADQ84029.1| CheD, stimulates methylation of MCP protein [Methylovorus sp. MP688] Length = 201 Score = 317 bits (813), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 150/198 (75%), Positives = 175/198 (88%), Gaps = 1/198 (0%) Query: 5 SEQIASNLYYDRTFDCDAAKILPGEYYFTTKDMMIVTVLGSCVSACIRDRVSGIGGMNHF 64 +E+I+++LYYDRTFDCDAAKI PGEYY+T KDM+IVTVLGSCVSACIRD VSGIGGMNHF Sbjct: 4 NEEISTSLYYDRTFDCDAAKISPGEYYYTDKDMVIVTVLGSCVSACIRDTVSGIGGMNHF 63 Query: 65 MLPDGG-GDDGSPVSASARYGTYAMEVLINDVLKSGARRENLEAKVFGGGNVLRGFSAIN 123 MLPDGG D +P S S RYG YAMEVLIN +L++GARRENLEAK+FGGGNVLR F+++N Sbjct: 64 MLPDGGNADKDNPASESMRYGAYAMEVLINQLLRNGARRENLEAKIFGGGNVLRSFTSMN 123 Query: 124 VGERNAEFVRRYLKAENIRVVAEDLNDIYPRKVYFFPRTGKVLVKKLKQMHNNTLVDREK 183 VGERNA FVR++LK ENI+V EDLNDIYPRKVYFFP+TGKVLVKKLKQ++N TL+ RE+ Sbjct: 124 VGERNALFVRQFLKDENIKVTGEDLNDIYPRKVYFFPKTGKVLVKKLKQLNNYTLIKREE 183 Query: 184 AYASKLVTKPVGGEVDLF 201 YAS+L T VGGEV+LF Sbjct: 184 TYASRLKTDSVGGEVELF 201 >ref|YP_003673859.1| CheD [Methylotenera versatilis 301] gb|ADI29282.1| CheD [Methylotenera versatilis 301] Length = 202 Score = 317 bits (812), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 150/202 (74%), Positives = 173/202 (85%), Gaps = 1/202 (0%) Query: 1 MSQASEQIASNLYYDRTFDCDAAKILPGEYYFTTKDMMIVTVLGSCVSACIRDRVSGIGG 60 MS E+I++ LYYDRTFDC+AAKI PGEYY+T KDM+IVTVLGSCVSACIRD VSGIGG Sbjct: 1 MSMLQEEISTTLYYDRTFDCNAAKISPGEYYYTDKDMVIVTVLGSCVSACIRDSVSGIGG 60 Query: 61 MNHFMLPD-GGGDDGSPVSASARYGTYAMEVLINDVLKSGARRENLEAKVFGGGNVLRGF 119 MNHFMLPD D SPVS S RYGTYAMEVLIN +L++GARRENLEAK+FGGGNVL+ F Sbjct: 61 MNHFMLPDSAAADKDSPVSESMRYGTYAMEVLINQLLRNGARRENLEAKIFGGGNVLKSF 120 Query: 120 SAINVGERNAEFVRRYLKAENIRVVAEDLNDIYPRKVYFFPRTGKVLVKKLKQMHNNTLV 179 + +NVG+RNA FVR++LK E IRV +EDL DIYPRKVY+FP+TG+VLVKKLK MHN+TLV Sbjct: 121 TTMNVGDRNAIFVRKFLKEERIRVTSEDLLDIYPRKVYYFPKTGRVLVKKLKNMHNDTLV 180 Query: 180 DREKAYASKLVTKPVGGEVDLF 201 RE+AYASKL VGGE+DLF Sbjct: 181 QREEAYASKLKVADVGGEIDLF 202 >ref|YP_003048684.1| chemoreceptor glutamine deamidase CheD [Methylotenera mobilis JLW8] gb|ACT48157.1| CheD, stimulates methylation of MCP protein [Methylotenera mobilis JLW8] Length = 202 Score = 314 bits (804), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 147/202 (72%), Positives = 169/202 (83%), Gaps = 1/202 (0%) Query: 1 MSQASEQIASNLYYDRTFDCDAAKILPGEYYFTTKDMMIVTVLGSCVSACIRDRVSGIGG 60 MS E++++ LY+DRTFDCDAAKI PGEYYFT KDM+IVTVLGSCVSACIRD +G+GG Sbjct: 1 MSMLEEEVSTTLYFDRTFDCDAAKIAPGEYYFTDKDMLIVTVLGSCVSACIRDSKTGVGG 60 Query: 61 MNHFMLPD-GGGDDGSPVSASARYGTYAMEVLINDVLKSGARRENLEAKVFGGGNVLRGF 119 MNHFMLPD D SPVS S RYGTYAMEVLIN +L++GARRENLEAK+FGGGNVL+ F Sbjct: 61 MNHFMLPDSAAADKDSPVSESMRYGTYAMEVLINQLLRNGARRENLEAKIFGGGNVLKSF 120 Query: 120 SAINVGERNAEFVRRYLKAENIRVVAEDLNDIYPRKVYFFPRTGKVLVKKLKQMHNNTLV 179 + NVG+RNA FVR+YL AE IR+ EDL DIYPRKVYFFP+TG+VLVKKLKQMHN+TL Sbjct: 121 TTTNVGDRNAIFVRKYLNAEGIRITGEDLLDIYPRKVYFFPKTGRVLVKKLKQMHNDTLF 180 Query: 180 DREKAYASKLVTKPVGGEVDLF 201 RE+ YASKL T VGG +DLF Sbjct: 181 KREEVYASKLKTTDVGGAIDLF 202 >ref|YP_003777604.1| chemoreceptor glutamine deamidase [Herbaspirillum seropedicae SmR1] gb|ADJ65696.1| chemoreceptor glutamine deamidase protein [Herbaspirillum seropedicae SmR1] Length = 203 Score = 313 bits (801), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 150/196 (76%), Positives = 170/196 (86%), Gaps = 1/196 (0%) Query: 6 EQIASNLYYDRTFDCDAAKILPGEYYFTTKDMMIVTVLGSCVSACIRDRVSGIGGMNHFM 65 E AS +Y+DR FDC AKILPGEY++T +DMMIVTVLGSCVSAC+RDRVSG+GGMNHFM Sbjct: 9 ENFASYVYHDRAFDCATAKILPGEYFYTGEDMMIVTVLGSCVSACLRDRVSGVGGMNHFM 68 Query: 66 LPDGGGDDGSPVSASARYGTYAMEVLINDVLKSGARRENLEAKVFGGGNVLRGFSAINVG 125 LPDGGG+ SPVSAS RYGTYAMEVLINDVLK+GARRENLE KVFGGG VLRG +A+NVG Sbjct: 69 LPDGGGEADSPVSASMRYGTYAMEVLINDVLKAGARRENLECKVFGGGAVLRGMNAMNVG 128 Query: 126 ERNAEFVRRYLKAENIRVVAEDLNDIYPRKVYFFPRTGKVLVKKLKQMHNNTLVDREKAY 185 ERNA FVR +L AE IRVVAEDLNDI+PRKV+FFPRTGKVLVKK+K+ + L RE+ Y Sbjct: 129 ERNAAFVRSFLSAEKIRVVAEDLNDIWPRKVHFFPRTGKVLVKKIKEAGAD-LTSREREY 187 Query: 186 ASKLVTKPVGGEVDLF 201 AS+L KPVGGE+DLF Sbjct: 188 ASRLQAKPVGGEIDLF 203