BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0025.p (223 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775423.1| transcription regulator protein [Herbaspiril... 442 e-122 ref|YP_002005421.1| TetR family transcriptional regulator [Cupri... 278 4e-73 ref|YP_004753926.1| TetR family transcriptional regulator [Colli... 258 5e-67 ref|YP_002231665.1| TetR family regulatory protein [Burkholderia... 258 5e-67 ref|NP_769217.1| transcriptional regulator [Bradyrhizobium japon... 216 2e-54 ref|YP_995826.1| TetR family transcriptional regulator [Verminep... 214 6e-54 ref|YP_001629937.1| TetR family transcriptional regulator [Borde... 213 1e-53 ref|YP_004279364.1| TetR family transcriptional regulator [Agrob... 212 3e-53 ref|NP_355097.2| TetR family transcriptional regulator [Agrobact... 212 3e-53 ref|ZP_08526704.1| TetR family transcriptional regulator [Agroba... 210 1e-52 >ref|YP_003775423.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63515.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 223 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 221/223 (99%), Positives = 222/223 (99%) Query: 1 MDIFGSNHFQINIFMPASSSSSAPSSRRRNPGRPREFDADQALDGAVRVFSERGYAGASI 60 MDIFGSNHFQINIFMPASSSSSAPSSRRRNPGRPREFDADQALDGAVRVFSERGYAGASI Sbjct: 1 MDIFGSNHFQINIFMPASSSSSAPSSRRRNPGRPREFDADQALDGAVRVFSERGYAGASI 60 Query: 61 SDLSEAMQLAQGSLYKAFRDKQSLFLAALERYRTQRSEKLRRAIDAGATGRERLRNMLLF 120 SDLSEAMQLAQGSLYKAFRDKQSLFLAALERYRTQRSEKLRRAIDAGATGRERLRNMLLF Sbjct: 61 SDLSEAMQLAQGSLYKAFRDKQSLFLAALERYRTQRSEKLRRAIDAGATGRERLRNMLLF 120 Query: 121 YAESAQGAAGRQGCLVVSSAVAITGFEPSVATQIASTLARNEALLGELIRQGQQDGSVAA 180 YAESAQGAAGRQGCLVVSSAVAITGFEPSVATQIASTLARNEALLGELIRQGQQDGSVAA Sbjct: 121 YAESAQGAAGRQGCLVVSSAVAITGFEPSVATQIASTLARNEALLGELIRQGQQDGSVAA 180 Query: 181 HADPASTARLLLCLTQGMRVVGKAGRSRKEMLALVDVALKVLD 223 HADP STARLLLCLTQGMRVVGKAGRSRKEMLALV+VALKVLD Sbjct: 181 HADPPSTARLLLCLTQGMRVVGKAGRSRKEMLALVEVALKVLD 223 >ref|YP_002005421.1| TetR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] emb|CAQ69354.1| putative transcriptional regulator, TetR family [Cupriavidus taiwanensis LMG 19424] Length = 207 Score = 278 bits (711), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 142/205 (69%), Positives = 166/205 (80%) Query: 18 SSSSSAPSSRRRNPGRPREFDADQALDGAVRVFSERGYAGASISDLSEAMQLAQGSLYKA 77 S+S S +R R+ GRPREF DQALD AVRVFSERGY GASISDL+ AM+LAQGSLYKA Sbjct: 2 SASQSHNPTRPRSRGRPREFSLDQALDRAVRVFSERGYHGASISDLTRAMRLAQGSLYKA 61 Query: 78 FRDKQSLFLAALERYRTQRSEKLRRAIDAGATGRERLRNMLLFYAESAQGAAGRQGCLVV 137 F+DKQSLFLAA +RYR+ RSE L+RAID TG +RLR L FYAESAQGAAGRQGCLVV Sbjct: 62 FKDKQSLFLAAFDRYRSLRSETLQRAIDNAGTGLDRLRATLAFYAESAQGAAGRQGCLVV 121 Query: 138 SSAVAITGFEPSVATQIASTLARNEALLGELIRQGQQDGSVAAHADPASTARLLLCLTQG 197 +S V + F+ VA IA+ L+RNEA L ELIRQGQ+DGS+ AH + +TA++LLCLTQG Sbjct: 122 ASTVELCAFDKPVARHIAAALSRNEAFLAELIRQGQEDGSIPAHVNVEATAQVLLCLTQG 181 Query: 198 MRVVGKAGRSRKEMLALVDVALKVL 222 MRVVGK GRSR++M A+VD ALKVL Sbjct: 182 MRVVGKTGRSREQMQAVVDAALKVL 206 >ref|YP_004753926.1| TetR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK63103.1| transcriptional regulator, TetR family [Collimonas fungivorans Ter331] Length = 207 Score = 258 bits (659), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 122/205 (59%), Positives = 157/205 (76%) Query: 18 SSSSSAPSSRRRNPGRPREFDADQALDGAVRVFSERGYAGASISDLSEAMQLAQGSLYKA 77 S+S S P + R+ GRPREFD DQALD AVRVFSERGY ++ DL++AMQLA GS+YKA Sbjct: 2 SNSLSDPVNVSRSRGRPREFDMDQALDKAVRVFSERGYHATTVCDLTQAMQLASGSVYKA 61 Query: 78 FRDKQSLFLAALERYRTQRSEKLRRAIDAGATGRERLRNMLLFYAESAQGAAGRQGCLVV 137 F+DK+S+FLAAL+RY+T R +LR + AGATG++++R L FYA+++ GA G +GC+VV Sbjct: 62 FKDKKSVFLAALDRYKTVRDAQLRAVVSAGATGKDQVRLALAFYADASHGAGGLEGCMVV 121 Query: 138 SSAVAITGFEPSVATQIASTLARNEALLGELIRQGQQDGSVAAHADPASTARLLLCLTQG 197 SA + F+P VA + + L RNE L+G LIRQGQQDGS+ H D A+TARLLLC+ QG Sbjct: 122 GSAAELATFDPDVAQWVTAALTRNEVLIGALIRQGQQDGSIPPHIDSAATARLLLCMIQG 181 Query: 198 MRVVGKAGRSRKEMLALVDVALKVL 222 MRVVGK GR+R EM L D+A+KVL Sbjct: 182 MRVVGKTGRTRNEMSVLTDIAMKVL 206 >ref|YP_002231665.1| TetR family regulatory protein [Burkholderia cenocepacia J2315] emb|CAR52851.1| TetR family regulatory protein [Burkholderia cenocepacia J2315] Length = 205 Score = 258 bits (659), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 128/187 (68%), Positives = 149/187 (79%) Query: 36 EFDADQALDGAVRVFSERGYAGASISDLSEAMQLAQGSLYKAFRDKQSLFLAALERYRTQ 95 EFDAD+ LD AVRVFSERGYAG SI+DL+ AM+LAQGSLYKAF+DKQSLFLAAL+RYR Q Sbjct: 18 EFDADKVLDQAVRVFSERGYAGTSITDLTRAMRLAQGSLYKAFKDKQSLFLAALDRYRAQ 77 Query: 96 RSEKLRRAIDAGATGRERLRNMLLFYAESAQGAAGRQGCLVVSSAVAITGFEPSVATQIA 155 R++ LRR ID G TG ERLR L FYAESA GA GRQGCLVV+S V ++ F+ SV ++A Sbjct: 78 RTQNLRRTIDDGGTGLERLRAALTFYAESAHGATGRQGCLVVASTVELSTFDQSVGDRVA 137 Query: 156 STLARNEALLGELIRQGQQDGSVAAHADPASTARLLLCLTQGMRVVGKAGRSRKEMLALV 215 + LA NEA+L LIRQGQ DGS+ H D TA++LLCLTQGMRVVGK GRSR +M A+V Sbjct: 138 AALACNEAMLAHLIRQGQADGSIKNHVDAEVTAQMLLCLTQGMRVVGKTGRSRAQMQAVV 197 Query: 216 DVALKVL 222 ALK L Sbjct: 198 ATALKAL 204 >ref|NP_769217.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC47842.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 206 Score = 216 bits (549), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 110/192 (57%), Positives = 138/192 (71%), Gaps = 1/192 (0%) Query: 31 PGRPREFDADQALDGAVRVFSERGYAGASISDLSEAMQLAQGSLYKAFRDKQSLFLAALE 90 PGRPREFD D ALDGAVRVF ERGY SI DL+ AM+LA GS+YKAFRDK ++FLAA E Sbjct: 15 PGRPREFDMDTALDGAVRVFCERGYHATSIGDLTAAMRLATGSVYKAFRDKHAVFLAAFE 74 Query: 91 RYRTQRSEKLRRAIDAGATGRERLRNMLLFYAESAQGAAGRQGCLVVSSAVAITGFEPSV 150 RY T R E+ R A G GRERLR++LL Y E +QG+ GR+GC+VV SAV ++ +P+V Sbjct: 75 RYATVRREQTRSAAARGVNGRERLRHVLLSYVEHSQGSEGRRGCIVVGSAVELSAVDPAV 134 Query: 151 ATQIASTLARNEALLGELIRQGQQDGSVAAHADPASTARLLLCLTQGMRVVGKAGRSRKE 210 ++ + LA NE + LIR+GQ DGS+ H TARL++C+TQGMRVVGKA R + Sbjct: 135 RARVNAQLATNENFIAGLIREGQADGSIPRHVAADDTARLMICITQGMRVVGKA-RLPLD 193 Query: 211 MLALVDVALKVL 222 LV VA+K+L Sbjct: 194 GTRLVGVAMKLL 205 >ref|YP_995826.1| TetR family transcriptional regulator [Verminephrobacter eiseniae EF01-2] gb|ABM56808.1| transcriptional regulator, TetR family [Verminephrobacter eiseniae EF01-2] Length = 208 Score = 214 bits (546), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 110/209 (52%), Positives = 144/209 (68%), Gaps = 1/209 (0%) Query: 15 MPASSSSSAPSSRRRNPGRPREFDADQALDGAVRVFSERGYAGASISDLSEAMQLAQGSL 74 MP + SAP R+ GRPREFD D+ALD A+R+F +RGY SI +L EAM L GS+ Sbjct: 1 MP-TIPGSAPMDLPRSRGRPREFDIDEALDRAIRIFCQRGYHATSIGELGEAMGLTAGSI 59 Query: 75 YKAFRDKQSLFLAALERYRTQRSEKLRRAIDAGATGRERLRNMLLFYAESAQGAAGRQGC 134 YKAF+DK+++FLAA +R + R +L AIDA +TGRE+L +L FYA + GA G+ GC Sbjct: 60 YKAFKDKRAVFLAAFDRQASMRGAQLMTAIDAASTGREKLHRILAFYASLSHGAEGQHGC 119 Query: 135 LVVSSAVAITGFEPSVATQIASTLARNEALLGELIRQGQQDGSVAAHADPASTARLLLCL 194 LVVS+AV + F+ VA ++ +L R E LL LIR GQ DGS+ A D +TA+ +LCL Sbjct: 120 LVVSTAVELAAFDEEVADRVVDSLQRREKLLIRLIRVGQSDGSIPAKVDSQATAKFMLCL 179 Query: 195 TQGMRVVGKAGRSRKEMLALVDVALKVLD 223 QG+RVVGK G S+ M A V+VA+KVLD Sbjct: 180 LQGLRVVGKTGPSKAAMSAAVEVAMKVLD 208 >ref|YP_001629937.1| TetR family transcriptional regulator [Bordetella petrii DSM 12804] emb|CAP41667.1| transcriptional regulator, TetR-family [Bordetella petrii] Length = 208 Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 104/206 (50%), Positives = 146/206 (70%) Query: 18 SSSSSAPSSRRRNPGRPREFDADQALDGAVRVFSERGYAGASISDLSEAMQLAQGSLYKA 77 S+S++AP R GRPREFD ALD A+ F E GY G SI+DLS+A++L+ GS+YKA Sbjct: 3 STSAAAPHHISRERGRPREFDIHTALDRAILYFREHGYNGVSIADLSQALKLSAGSIYKA 62 Query: 78 FRDKQSLFLAALERYRTQRSEKLRRAIDAGATGRERLRNMLLFYAESAQGAAGRQGCLVV 137 F K LF AAL+RY R +++ + +GRE+LR +L+FYAES+ A GR GCLVV Sbjct: 63 FHSKHGLFTAALDRYMALRGQQIAEITASAESGREKLRRLLVFYAESSHAAEGRYGCLVV 122 Query: 138 SSAVAITGFEPSVATQIASTLARNEALLGELIRQGQQDGSVAAHADPASTARLLLCLTQG 197 AV ++ + ++A ++AS L+ NE L +I QGQQDGS++ A+P +TA+L+L L QG Sbjct: 123 VGAVELSSTDEAIAAKVASALSANERRLKAIIEQGQQDGSISRTAEPGTTAKLMLALLQG 182 Query: 198 MRVVGKAGRSRKEMLALVDVALKVLD 223 MRV+GK G++RK M+A+VD A+K+LD Sbjct: 183 MRVLGKVGQNRKAMMAVVDTAMKLLD 208 >ref|YP_004279364.1| TetR family transcriptional regulator [Agrobacterium sp. H13-3] gb|ADY65044.1| transcriptional regulator, TetR family [Agrobacterium sp. H13-3] Length = 220 Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 105/208 (50%), Positives = 144/208 (69%), Gaps = 2/208 (0%) Query: 14 FMPASSSSSAPSSRRRNPGRPREFDADQALDGAVRVFSERGYAGASISDLSEAMQLAQGS 73 M +S +++P R R GRPREFD D+ALDGA+RVFS RGY S+ DL++AM+LAQGS Sbjct: 13 IMTDTSHTNSPEQRHR--GRPREFDIDRALDGAIRVFSRRGYHATSVGDLTDAMELAQGS 70 Query: 74 LYKAFRDKQSLFLAALERYRTQRSEKLRRAIDAGATGRERLRNMLLFYAESAQGAAGRQG 133 LYKAF+DK+S+F+A +ERYRT ++E+ A+ TG ERLR L+FYAE + GA G G Sbjct: 71 LYKAFKDKKSIFIATMERYRTLQTERFEAAVAGYDTGYERLRAGLMFYAERSHGATGSDG 130 Query: 134 CLVVSSAVAITGFEPSVATQIASTLARNEALLGELIRQGQQDGSVAAHADPASTARLLLC 193 CLVV +A + + +A + + E ++ L+ +GQ+DGSV + DP AR +LC Sbjct: 131 CLVVGAAADLAALDDDIAVVVERAVKARERIVARLVAEGQRDGSVQSKTDPDDLARAMLC 190 Query: 194 LTQGMRVVGKAGRSRKEMLALVDVALKV 221 + GMRVVGK GRS +EM A+VD+ALK+ Sbjct: 191 MMYGMRVVGKTGRSLEEMTAVVDIALKL 218 >ref|NP_355097.2| TetR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gb|AAK87882.2| transcriptional regulator, TetR family [Agrobacterium tumefaciens str. C58] Length = 233 Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 100/206 (48%), Positives = 145/206 (70%) Query: 18 SSSSSAPSSRRRNPGRPREFDADQALDGAVRVFSERGYAGASISDLSEAMQLAQGSLYKA 77 ++++ S +R+ GRPREFD D+ALDGA+RVFS RGY S+ DL++AM+LAQGSLYKA Sbjct: 28 TNTTQTHSQEQRHRGRPREFDLDRALDGAIRVFSRRGYHATSVGDLTDAMELAQGSLYKA 87 Query: 78 FRDKQSLFLAALERYRTQRSEKLRRAIDAGATGRERLRNMLLFYAESAQGAAGRQGCLVV 137 F+DK+++F+A +ERYR ++E+ A+ G TG ERLR L+FYAE + G G GCLVV Sbjct: 88 FKDKKAIFIATMERYRIVQTERFEAAVAGGETGYERLRAGLMFYAERSHGGVGSDGCLVV 147 Query: 138 SSAVAITGFEPSVATQIASTLARNEALLGELIRQGQQDGSVAAHADPASTARLLLCLTQG 197 +A + + +A + + E ++ +I +GQ+DGSV + ADP AR +LC+ G Sbjct: 148 GAAADLAALDDDIAVVVERAVKARERIVARIITEGQKDGSVHSTADPDDLARAMLCMMYG 207 Query: 198 MRVVGKAGRSRKEMLALVDVALKVLD 223 MRVVGK GR+ K+M+A+VD+A+K+ D Sbjct: 208 MRVVGKTGRTLKDMVAVVDIAMKLAD 233 >ref|ZP_08526704.1| TetR family transcriptional regulator [Agrobacterium sp. ATCC 31749] gb|EGL66603.1| TetR family transcriptional regulator [Agrobacterium sp. ATCC 31749] Length = 225 Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 99/206 (48%), Positives = 144/206 (69%) Query: 18 SSSSSAPSSRRRNPGRPREFDADQALDGAVRVFSERGYAGASISDLSEAMQLAQGSLYKA 77 ++++ S +R+ GRPREFD D+ALDGA+RVFS RGY S+ DL++AM+LAQGSLYKA Sbjct: 20 TNTTQTHSQEQRHRGRPREFDLDRALDGAIRVFSRRGYHATSVGDLTDAMELAQGSLYKA 79 Query: 78 FRDKQSLFLAALERYRTQRSEKLRRAIDAGATGRERLRNMLLFYAESAQGAAGRQGCLVV 137 F+DK+++F+A +ERYR ++E+ A+ TG ERLR L+FYAE + G G GCLVV Sbjct: 80 FKDKKAIFIATMERYRIVQTERFEAAVAGFETGYERLRAGLMFYAERSHGGVGSDGCLVV 139 Query: 138 SSAVAITGFEPSVATQIASTLARNEALLGELIRQGQQDGSVAAHADPASTARLLLCLTQG 197 +A + + +A + + E ++ +I +GQ+DGSV + ADP AR +LC+ G Sbjct: 140 GAAADLAALDDDIAVVVERAVKARERIVAHIITEGQKDGSVHSTADPDDLARAMLCMMYG 199 Query: 198 MRVVGKAGRSRKEMLALVDVALKVLD 223 MRVVGK GR+ K+M+A+VD+A+K+ D Sbjct: 200 MRVVGKTGRTLKDMVAVVDIAMKLAD 225