BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0024.p         (107 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003881983.1| hypothetical protein Dda3937_03900 [Dickeya ...    86   1e-15
gb|EGP47252.1| hypothetical protein AXXA_05853 [Achromobacter xy...    74   7e-12
ref|YP_003018187.1| hypothetical protein PC1_2621 [Pectobacteriu...    69   2e-10
ref|ZP_03826151.1| hypothetical protein PcarbP_06002 [Pectobacte...    69   2e-10

>ref|YP_003881983.1| hypothetical protein Dda3937_03900 [Dickeya dadantii 3937]
 gb|ADM97426.1| hypothetical protein Dda3937_03900 [Dickeya dadantii 3937]
          Length = 149

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 58/80 (72%), Gaps = 6/80 (7%)

Query: 28  SSFESKLQLAKGSAKPDPARELQEWLAMTPDQRLFFTVLHSMGVSKEQYEQMSPEEKEKL 87
           ++  S+LQL      P  A+EL EW AM+P++RLFF+VL SMG+SKEQYE M PE+K +L
Sbjct: 73  TNVRSQLQL------PAAAQELMEWPAMSPEERLFFSVLSSMGISKEQYEAMPPEQKMEL 126

Query: 88  AEKVRERIKEMAKNGTAGTA 107
             KV+ERIKEMAK G   +A
Sbjct: 127 DRKVQERIKEMAKEGRYPSA 146


>gb|EGP47252.1| hypothetical protein AXXA_05853 [Achromobacter xylosoxidans AXX-A]
          Length = 120

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 15/119 (12%)

Query: 1   MNNIDSLDNRT-SYPG----SASAQSKSNAAT-------SSFESKLQLAKGSAKPDPARE 48
           MN ++S  +   S+ G    +  A  KS AAT        +   KL LA      D  +E
Sbjct: 1   MNKVESTGSALGSWAGKPAMAGGAGGKSFAATLQDAQEADAGRHKLGLAN-QGPSDAEQE 59

Query: 49  LQEWLAMTPDQRLFFTVLHSMGVSKEQYEQMSPEEKEKLAEKVRERIKEMAK--NGTAG 105
           LQ++L M+P +RLF  +L S+G++KEQY  M+P +KE++A KV+ERIKE+AK   G AG
Sbjct: 60  LQDYLTMSPAERLFTQILQSLGITKEQYAAMTPAQKEEVARKVQERIKELAKQEQGAAG 118


>ref|YP_003018187.1| hypothetical protein PC1_2621 [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gb|ACT13651.1| hypothetical protein PC1_2621 [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 118

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 49/67 (73%), Gaps = 5/67 (7%)

Query: 40  SAKPDP-----ARELQEWLAMTPDQRLFFTVLHSMGVSKEQYEQMSPEEKEKLAEKVRER 94
           SAK +P     A+E  +W++M+ ++RLFF+VL SMG+SKEQYE M  EE+  L  KV+ER
Sbjct: 47  SAKVEPQRSKAAQEFMDWVSMSHEERLFFSVLASMGISKEQYEAMPLEERMALDLKVQER 106

Query: 95  IKEMAKN 101
           IKEMA+ 
Sbjct: 107 IKEMAEQ 113


>ref|ZP_03826151.1| hypothetical protein PcarbP_06002 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 118

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 48/68 (70%), Gaps = 5/68 (7%)

Query: 40  SAKPDP-----ARELQEWLAMTPDQRLFFTVLHSMGVSKEQYEQMSPEEKEKLAEKVRER 94
           SAK +P     A+E  +W++   ++RLFF+VL SMG+SKEQYE M  EE+  L  KV+ER
Sbjct: 47  SAKVEPQRSKAAQEFMDWVSTPHEERLFFSVLASMGISKEQYETMPAEERMALDLKVQER 106

Query: 95  IKEMAKNG 102
           IKEMA+ G
Sbjct: 107 IKEMAEQG 114