BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0011.p (198 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777064.1| recombinational DNA repair protein [Herbaspi... 404 e-111 sp|A4G3Z0.2|RECR_HERAR RecName: Full=Recombination protein recR ... 347 6e-94 ref|YP_001354018.1| recombination protein RecR [Janthinobacteriu... 345 2e-93 ref|ZP_08274878.1| Recombination protein RecR [Oxalobacteraceae ... 334 3e-90 ref|YP_001099354.1| recombination protein RecR [Herminiimonas ar... 329 1e-88 ref|YP_004753460.1| recombination protein [Collimonas fungivoran... 329 1e-88 ref|YP_001857188.1| recombination protein RecR [Burkholderia phy... 310 9e-83 ref|YP_002911289.1| recombination protein RecR [Burkholderia glu... 310 1e-82 ref|YP_001579633.1| recombination protein RecR [Burkholderia mul... 310 1e-82 ref|ZP_02883498.1| recombination protein RecR [Burkholderia gram... 310 1e-82 >ref|YP_003777064.1| recombinational DNA repair protein [Herbaspirillum seropedicae SmR1] gb|ADJ65156.1| rocombinational DNA repair protein [Herbaspirillum seropedicae SmR1] Length = 198 Score = 404 bits (1038), Expect = e-111, Method: Compositional matrix adjust. Identities = 197/198 (99%), Positives = 198/198 (100%) Query: 1 LKTPSSLTVLTDSLRRLPGIGPKTAQRMAYHLLQHDRDAAADLSQSLAKALDTIRHCALC 60 +KTPSSLTVLTDSLRRLPGIGPKTAQRMAYHLLQHDRDAAADLSQSLAKALDTIRHCALC Sbjct: 1 MKTPSSLTVLTDSLRRLPGIGPKTAQRMAYHLLQHDRDAAADLSQSLAKALDTIRHCALC 60 Query: 61 NTFTEQVVCETCQDSQRDHTQLCVVESPSDQVMIEQTLTFKGLYFVLMGRLSPLDGIGPR 120 NTFTEQVVCETCQDSQRDHTQLCVVESPSDQVMIEQTLTFKGLYFVLMGRLSPLDGIGPR Sbjct: 61 NTFTEQVVCETCQDSQRDHTQLCVVESPSDQVMIEQTLTFKGLYFVLMGRLSPLDGIGPR 120 Query: 121 DIHLEKLITRATDGVVSEVVLATNFTNEGEATAHYISETLKARGLKVSRLARGVPVGGEL 180 DIHLEKLITRATDGVVSEVVLATNFTNEGEATAHYISETLKARGLKVSRLARGVPVGGEL Sbjct: 121 DIHLEKLITRATDGVVSEVVLATNFTNEGEATAHYISETLKARGLKVSRLARGVPVGGEL 180 Query: 181 EYVDAGTIARAMLDRRTT 198 EYVDAGTIARAMLDRRTT Sbjct: 181 EYVDAGTIARAMLDRRTT 198 >sp|A4G3Z0.2|RECR_HERAR RecName: Full=Recombination protein recR emb|CAL61227.2| Recombination protein RecR [Herminiimonas arsenicoxydans] Length = 198 Score = 347 bits (890), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 160/198 (80%), Positives = 184/198 (92%) Query: 1 LKTPSSLTVLTDSLRRLPGIGPKTAQRMAYHLLQHDRDAAADLSQSLAKALDTIRHCALC 60 +K+PSSL LT++LRRLPG+GPK+AQRMAYHL+QHDRD AA L ++L++A++ ++HCA+C Sbjct: 1 MKSPSSLAFLTEALRRLPGVGPKSAQRMAYHLMQHDRDGAAMLGRALSQAVERVQHCAMC 60 Query: 61 NTFTEQVVCETCQDSQRDHTQLCVVESPSDQVMIEQTLTFKGLYFVLMGRLSPLDGIGPR 120 NTFTE VCETC D++R+ LCVVE+P DQ+MIEQTLTFKGLYFVLMGRLSPLDGIGP+ Sbjct: 61 NTFTESAVCETCLDAERNAALLCVVETPGDQLMIEQTLTFKGLYFVLMGRLSPLDGIGPK 120 Query: 121 DIHLEKLITRATDGVVSEVVLATNFTNEGEATAHYISETLKARGLKVSRLARGVPVGGEL 180 DIHLEKLI+RATDG+V EVVLATNFTNEGEATAHYISETLKARGLKVSRLARGVPVGGEL Sbjct: 121 DIHLEKLISRATDGIVQEVVLATNFTNEGEATAHYISETLKARGLKVSRLARGVPVGGEL 180 Query: 181 EYVDAGTIARAMLDRRTT 198 EYVDAGTIARAMLDRRTT Sbjct: 181 EYVDAGTIARAMLDRRTT 198 >ref|YP_001354018.1| recombination protein RecR [Janthinobacterium sp. Marseille] sp|A6T0H1.1|RECR_JANMA RecName: Full=Recombination protein recR gb|ABR89322.1| Recombinational DNA repair protein (RecF pathway) [Janthinobacterium sp. Marseille] Length = 198 Score = 345 bits (885), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 161/198 (81%), Positives = 184/198 (92%) Query: 1 LKTPSSLTVLTDSLRRLPGIGPKTAQRMAYHLLQHDRDAAADLSQSLAKALDTIRHCALC 60 +KTPSSL LT++LRRLPG+GPK+AQRMAYHL+QHDRD AA L ++L++A++ ++HCA+C Sbjct: 1 MKTPSSLDFLTEALRRLPGVGPKSAQRMAYHLMQHDRDGAAMLGRALSQAVEKVQHCAMC 60 Query: 61 NTFTEQVVCETCQDSQRDHTQLCVVESPSDQVMIEQTLTFKGLYFVLMGRLSPLDGIGPR 120 NTFTE VCETC D++R+ LCVVE+P DQ+MIEQTLTFKGLYFVLMGRLSPLDGIGP+ Sbjct: 61 NTFTEHEVCETCLDAERNPALLCVVETPGDQLMIEQTLTFKGLYFVLMGRLSPLDGIGPK 120 Query: 121 DIHLEKLITRATDGVVSEVVLATNFTNEGEATAHYISETLKARGLKVSRLARGVPVGGEL 180 DIHLEKLI+RATDG+V EVVLATNFTNEGEATAHYISETLKARGLKVSRLARGVPVGGEL Sbjct: 121 DIHLEKLISRATDGIVQEVVLATNFTNEGEATAHYISETLKARGLKVSRLARGVPVGGEL 180 Query: 181 EYVDAGTIARAMLDRRTT 198 EYVDAGTIARAMLDRRTT Sbjct: 181 EYVDAGTIARAMLDRRTT 198 >ref|ZP_08274878.1| Recombination protein RecR [Oxalobacteraceae bacterium IMCC9480] gb|EGF31647.1| Recombination protein RecR [Oxalobacteraceae bacterium IMCC9480] Length = 198 Score = 334 bits (857), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 155/198 (78%), Positives = 180/198 (90%) Query: 1 LKTPSSLTVLTDSLRRLPGIGPKTAQRMAYHLLQHDRDAAADLSQSLAKALDTIRHCALC 60 +KTPSSL LT++LRRLPG+GPK+AQR+AYHL+QHDRD A L ++L +A+D ++HC+ C Sbjct: 1 MKTPSSLEFLTETLRRLPGVGPKSAQRIAYHLMQHDRDGAEQLGRALLQAVDRVQHCSRC 60 Query: 61 NTFTEQVVCETCQDSQRDHTQLCVVESPSDQVMIEQTLTFKGLYFVLMGRLSPLDGIGPR 120 NTFTE +VCETC D +RD T LCVVE+P DQ+MIEQTLT+KG YFVLMGRLSPLDGIGP+ Sbjct: 61 NTFTEHLVCETCLDPERDATLLCVVETPGDQLMIEQTLTYKGFYFVLMGRLSPLDGIGPK 120 Query: 121 DIHLEKLITRATDGVVSEVVLATNFTNEGEATAHYISETLKARGLKVSRLARGVPVGGEL 180 DIHL+KLI RA+DG+V+EVVLATNFTNEGEATAHYISET+KARGL VSRLARGVPVGGEL Sbjct: 121 DIHLDKLILRASDGIVAEVVLATNFTNEGEATAHYISETMKARGLSVSRLARGVPVGGEL 180 Query: 181 EYVDAGTIARAMLDRRTT 198 EYVDAGTIARAMLDRRTT Sbjct: 181 EYVDAGTIARAMLDRRTT 198 >ref|YP_001099354.1| recombination protein RecR [Herminiimonas arsenicoxydans] Length = 185 Score = 329 bits (844), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 152/185 (82%), Positives = 173/185 (93%) Query: 14 LRRLPGIGPKTAQRMAYHLLQHDRDAAADLSQSLAKALDTIRHCALCNTFTEQVVCETCQ 73 +RRLPG+GPK+AQRMAYHL+QHDRD AA L ++L++A++ ++HCA+CNTFTE VCETC Sbjct: 1 MRRLPGVGPKSAQRMAYHLMQHDRDGAAMLGRALSQAVERVQHCAMCNTFTESAVCETCL 60 Query: 74 DSQRDHTQLCVVESPSDQVMIEQTLTFKGLYFVLMGRLSPLDGIGPRDIHLEKLITRATD 133 D++R+ LCVVE+P DQ+MIEQTLTFKGLYFVLMGRLSPLDGIGP+DIHLEKLI+RATD Sbjct: 61 DAERNAALLCVVETPGDQLMIEQTLTFKGLYFVLMGRLSPLDGIGPKDIHLEKLISRATD 120 Query: 134 GVVSEVVLATNFTNEGEATAHYISETLKARGLKVSRLARGVPVGGELEYVDAGTIARAML 193 G+V EVVLATNFTNEGEATAHYISETLKARGLKVSRLARGVPVGGELEYVDAGTIARAML Sbjct: 121 GIVQEVVLATNFTNEGEATAHYISETLKARGLKVSRLARGVPVGGELEYVDAGTIARAML 180 Query: 194 DRRTT 198 DRRTT Sbjct: 181 DRRTT 185 >ref|YP_004753460.1| recombination protein [Collimonas fungivorans Ter331] gb|AEK62637.1| Recombination protein [Collimonas fungivorans Ter331] Length = 190 Score = 329 bits (844), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 156/190 (82%), Positives = 174/190 (91%) Query: 9 VLTDSLRRLPGIGPKTAQRMAYHLLQHDRDAAADLSQSLAKALDTIRHCALCNTFTEQVV 68 +LT++LR LPG+GPK+AQRMAYHLLQHDRD AA L ++L +A+D IRHCA+CNTFTE V Sbjct: 1 MLTEALRHLPGVGPKSAQRMAYHLLQHDRDGAALLGRALTQAVDQIRHCAMCNTFTENEV 60 Query: 69 CETCQDSQRDHTQLCVVESPSDQVMIEQTLTFKGLYFVLMGRLSPLDGIGPRDIHLEKLI 128 CETC D +RD + LCVVE+P+DQ+MIEQTLTFKGLYFVLMGRLSPLDGIGP+DI LEKLI Sbjct: 61 CETCLDPERDPSLLCVVETPTDQLMIEQTLTFKGLYFVLMGRLSPLDGIGPKDIQLEKLI 120 Query: 129 TRATDGVVSEVVLATNFTNEGEATAHYISETLKARGLKVSRLARGVPVGGELEYVDAGTI 188 RATDGVV EVVLATNFTNEGEATAHYISET+KARGL+VSRLARGVPVGGELEYVDAGTI Sbjct: 121 GRATDGVVKEVVLATNFTNEGEATAHYISETMKARGLQVSRLARGVPVGGELEYVDAGTI 180 Query: 189 ARAMLDRRTT 198 ARAMLDRR T Sbjct: 181 ARAMLDRRAT 190 >ref|YP_001857188.1| recombination protein RecR [Burkholderia phymatum STM815] sp|B2JG60.1|RECR_BURP8 RecName: Full=Recombination protein recR gb|ACC70142.1| recombination protein RecR [Burkholderia phymatum STM815] Length = 198 Score = 310 bits (793), Expect = 9e-83, Method: Compositional matrix adjust. Identities = 139/197 (70%), Positives = 172/197 (87%) Query: 1 LKTPSSLTVLTDSLRRLPGIGPKTAQRMAYHLLQHDRDAAADLSQSLAKALDTIRHCALC 60 +K PS+L+ L ++LR LPG+GPK+AQRMAYHL+QHDR+ A L +SL A + ++HC C Sbjct: 1 MKQPSALSALVEALRALPGVGPKSAQRMAYHLMQHDREGAEKLGRSLLFATEHLQHCEKC 60 Query: 61 NTFTEQVVCETCQDSQRDHTQLCVVESPSDQVMIEQTLTFKGLYFVLMGRLSPLDGIGPR 120 NTFTE +CE C D++RD T LCVVE+P+DQ+M+EQT+T++GLYFVLMGRLSPLDGIGP+ Sbjct: 61 NTFTEAQICEVCSDTERDPTLLCVVETPADQIMLEQTMTWRGLYFVLMGRLSPLDGIGPK 120 Query: 121 DIHLEKLITRATDGVVSEVVLATNFTNEGEATAHYISETLKARGLKVSRLARGVPVGGEL 180 +IH ++L+ RATDGVV EVVLATNFTNEGEATAHY+ +TLK+RGL V+RLARGVPVGGEL Sbjct: 121 EIHFDRLVKRATDGVVKEVVLATNFTNEGEATAHYLGQTLKSRGLSVTRLARGVPVGGEL 180 Query: 181 EYVDAGTIARAMLDRRT 197 EYVDAGTIARAMLDRR+ Sbjct: 181 EYVDAGTIARAMLDRRS 197 >ref|YP_002911289.1| recombination protein RecR [Burkholderia glumae BGR1] gb|ACR28585.1| Recombination protein RecR [Burkholderia glumae BGR1] Length = 198 Score = 310 bits (793), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 140/197 (71%), Positives = 171/197 (86%) Query: 1 LKTPSSLTVLTDSLRRLPGIGPKTAQRMAYHLLQHDRDAAADLSQSLAKALDTIRHCALC 60 +K PS+L+ L ++LR LPG+GPK+AQRMAYHL+QHDR+ A L QSL A ++HC C Sbjct: 1 MKQPSALSALVEALRVLPGVGPKSAQRMAYHLMQHDREGAERLGQSLLFATQHLQHCEKC 60 Query: 61 NTFTEQVVCETCQDSQRDHTQLCVVESPSDQVMIEQTLTFKGLYFVLMGRLSPLDGIGPR 120 NTFTE +CE C D++RD + LCVVE+P+DQ+M+EQTLT++GLYFVLMGRLSPLDGIGP+ Sbjct: 61 NTFTEAQICEVCSDTERDPSLLCVVETPADQIMLEQTLTYRGLYFVLMGRLSPLDGIGPK 120 Query: 121 DIHLEKLITRATDGVVSEVVLATNFTNEGEATAHYISETLKARGLKVSRLARGVPVGGEL 180 +IH ++L+ RA+DG+V EVVLATNFTNEGEATAHY+ +TLKARGL V+RLARGVPVGGEL Sbjct: 121 EIHFDRLVRRASDGIVKEVVLATNFTNEGEATAHYLGQTLKARGLSVTRLARGVPVGGEL 180 Query: 181 EYVDAGTIARAMLDRRT 197 EYVDAGTIARAMLDRRT Sbjct: 181 EYVDAGTIARAMLDRRT 197 >ref|YP_001579633.1| recombination protein RecR [Burkholderia multivorans ATCC 17616] ref|YP_001946251.1| recombination protein RecR [Burkholderia multivorans ATCC 17616] ref|ZP_03585732.1| recombination protein RecR [Burkholderia multivorans CGD1] sp|A9AGY1.1|RECR_BURM1 RecName: Full=Recombination protein recR gb|ABX15136.1| recombination protein RecR [Burkholderia multivorans ATCC 17616] dbj|BAG43715.1| recombination protein [Burkholderia multivorans ATCC 17616] gb|EED99439.1| recombination protein RecR [Burkholderia multivorans CGD1] Length = 198 Score = 310 bits (793), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 140/197 (71%), Positives = 171/197 (86%) Query: 1 LKTPSSLTVLTDSLRRLPGIGPKTAQRMAYHLLQHDRDAAADLSQSLAKALDTIRHCALC 60 +K PS+L+ L ++LR LPG+GPK+AQRMAYHL+QHDR+ A L +SL A + +RHC C Sbjct: 1 MKQPSALSALVEALRALPGVGPKSAQRMAYHLMQHDREGAERLGRSLLFATEHLRHCDKC 60 Query: 61 NTFTEQVVCETCQDSQRDHTQLCVVESPSDQVMIEQTLTFKGLYFVLMGRLSPLDGIGPR 120 NTFTE +CE C D +RD T LCVVE+P+DQ+M+EQT+T++GLYFVLMGRLSPLDGIGP+ Sbjct: 61 NTFTEAQICEVCSDEERDPTLLCVVETPADQIMLEQTMTYRGLYFVLMGRLSPLDGIGPK 120 Query: 121 DIHLEKLITRATDGVVSEVVLATNFTNEGEATAHYISETLKARGLKVSRLARGVPVGGEL 180 +IH ++L+ RA+DG+V EVVLATNFTNEGEATAHY+ +TLKARGL V+RLARGVPVGGEL Sbjct: 121 EIHFDRLVRRASDGIVKEVVLATNFTNEGEATAHYLGQTLKARGLAVTRLARGVPVGGEL 180 Query: 181 EYVDAGTIARAMLDRRT 197 EYVDAGTIARAMLDRRT Sbjct: 181 EYVDAGTIARAMLDRRT 197 >ref|ZP_02883498.1| recombination protein RecR [Burkholderia graminis C4D1M] gb|EDT10930.1| recombination protein RecR [Burkholderia graminis C4D1M] Length = 198 Score = 310 bits (793), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 139/197 (70%), Positives = 172/197 (87%) Query: 1 LKTPSSLTVLTDSLRRLPGIGPKTAQRMAYHLLQHDRDAAADLSQSLAKALDTIRHCALC 60 +K PS+L+ L ++LR LPG+GPK+AQRMAYHL+QHDRD A L ++L A + ++HC C Sbjct: 1 MKQPSALSALVEALRVLPGVGPKSAQRMAYHLMQHDRDGAEKLGRALLFATEHLQHCEKC 60 Query: 61 NTFTEQVVCETCQDSQRDHTQLCVVESPSDQVMIEQTLTFKGLYFVLMGRLSPLDGIGPR 120 NTFTE +CE C DS+RD T LCVVE+P+DQ+M+EQT+T++GLYFVLMGRLSPLDGIGP+ Sbjct: 61 NTFTEAQICEVCLDSERDPTLLCVVETPADQIMLEQTMTYRGLYFVLMGRLSPLDGIGPK 120 Query: 121 DIHLEKLITRATDGVVSEVVLATNFTNEGEATAHYISETLKARGLKVSRLARGVPVGGEL 180 +IH ++L+ RA+DG+V EVVLATNFTNEGEATAHY+ +TLKARGL V+RLARGVPVGGEL Sbjct: 121 EIHFDRLVKRASDGIVKEVVLATNFTNEGEATAHYLGQTLKARGLAVTRLARGVPVGGEL 180 Query: 181 EYVDAGTIARAMLDRRT 197 EYVDAGTIARAMLDRR+ Sbjct: 181 EYVDAGTIARAMLDRRS 197