BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0008.p (172 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777067.1| DNA polymerase III subunit gamma/tau [Herbas... 326 8e-88 ref|YP_004753462.1| DNA polymerase III subunits gamma and tau [C... 158 3e-37 ref|ZP_08274876.1| DNA polymerase III subunits gamma and tau [Ox... 141 4e-32 ref|YP_001354020.1| DNA polymerase III gamma and tau subunit [Ja... 137 6e-31 ref|YP_001099352.1| DNA polymerase III subunit tau/gamma [Hermin... 128 4e-28 ref|YP_002981091.1| DNA polymerase III subunits gamma and tau [R... 120 5e-26 emb|CBJ38440.1| DNA polymerase III subunits gamma and tau [Ralst... 119 1e-25 ref|ZP_04577428.1| DNA polymerase III gamma and tau [Oxalobacter... 117 4e-25 ref|YP_002259860.1| dna polymerase III subunit gamma/tau (c-term... 117 9e-25 ref|YP_003746041.1| DNA polymerase III subunits gamma and tau [R... 117 9e-25 >ref|YP_003777067.1| DNA polymerase III subunit gamma/tau [Herbaspirillum seropedicae SmR1] gb|ADJ65159.1| DNA polymerase III (subunits tau and gamma) protein [Herbaspirillum seropedicae SmR1] Length = 712 Score = 326 bits (836), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 161/168 (95%), Positives = 163/168 (97%), Gaps = 1/168 (0%) Query: 6 EKKTEP-AAVAPSRRTRARSARPPHPAQQQETARIAAELGWDGHWPTLAASLASLRGVAH 64 +KKTEP VA + RTRARSARPPHPAQQQETARIAAELGWDGHWPTLAASLASLRGVAH Sbjct: 545 KKKTEPRTHVAHTHRTRARSARPPHPAQQQETARIAAELGWDGHWPTLAASLASLRGVAH 604 Query: 65 QMAFQSELVRCEPLNGGNVCFHLRIPLETLRSSGSVEKLTAALSERFGKEIRVETEIGAV 124 QMAFQSELVRCEPLNGGNVCFHLRIPLETLRSSGSVEKLTAALSERFGKEIRVETEIGAV Sbjct: 605 QMAFQSELVRCEPLNGGNVCFHLRIPLETLRSSGSVEKLTAALSERFGKEIRVETEIGAV 664 Query: 125 ADTANAVAEAERAERQRQAEHKMKNDPFVVTMMREFGASIVPGSIQPR 172 ADTANAVAEAERAERQRQAEHKMKNDPFVVTMMREFGASIVPGSIQPR Sbjct: 665 ADTANAVAEAERAERQRQAEHKMKNDPFVVTMMREFGASIVPGSIQPR 712 >ref|YP_004753462.1| DNA polymerase III subunits gamma and tau [Collimonas fungivorans Ter331] gb|AEK62639.1| DNA polymerase III subunits gamma and tau [Collimonas fungivorans Ter331] Length = 703 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 80/130 (61%), Positives = 100/130 (76%), Gaps = 2/130 (1%) Query: 42 ELGWDGHWPTLAASLASLRGVAHQMAFQSELVRCEPLNGGNVCFHLRIPLETLRSSGSVE 101 L WDG+WP LA++LA +RGVAHQ+A QSELV+ + +G FHLRIP +TLRS+GSV+ Sbjct: 574 NLNWDGNWPLLASTLA-VRGVAHQLAQQSELVKSDS-SGPAAQFHLRIPFDTLRSAGSVD 631 Query: 102 KLTAALSERFGKEIRVETEIGAVADTANAVAEAERAERQRQAEHKMKNDPFVVTMMREFG 161 KL ALSE FG+ ++VETE+G V TANA A +AERQR AE +DPF+ +MMREFG Sbjct: 632 KLEVALSEHFGRPVKVETELGTVRHTANAQMLAAQAERQRLAELTAHSDPFIQSMMREFG 691 Query: 162 ASIVPGSIQP 171 ASIVPGSI+P Sbjct: 692 ASIVPGSIKP 701 >ref|ZP_08274876.1| DNA polymerase III subunits gamma and tau [Oxalobacteraceae bacterium IMCC9480] gb|EGF31645.1| DNA polymerase III subunits gamma and tau [Oxalobacteraceae bacterium IMCC9480] Length = 361 Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 74/130 (56%), Positives = 95/130 (73%), Gaps = 3/130 (2%) Query: 42 ELGWDGHWPTLAASLASLRGVAHQMAFQSELVRCEPLNGGNVCFHLRIPLETLRSSGSVE 101 EL WDG WP LAA LA +RGV Q+A Q+ELVRC+ + G + HLR+PLETL S +++ Sbjct: 234 ELDWDGDWPVLAAQLA-VRGVVQQLALQAELVRCDKVEG--IALHLRVPLETLASPANID 290 Query: 102 KLTAALSERFGKEIRVETEIGAVADTANAVAEAERAERQRQAEHKMKNDPFVVTMMREFG 161 KL ALS F + +RV TE+G TANA A AERA +Q+ AE +++ DPFV+ MMREFG Sbjct: 291 KLATALSTHFNQPVRVTTELGIARHTANAKANAERAAQQQVAEQQIQADPFVLAMMREFG 350 Query: 162 ASIVPGSIQP 171 A+IVPGSI+P Sbjct: 351 ATIVPGSIKP 360 >ref|YP_001354020.1| DNA polymerase III gamma and tau subunit [Janthinobacterium sp. Marseille] gb|ABR88343.1| DNA polymerase III gamma and tau subunit [Janthinobacterium sp. Marseille] Length = 673 Score = 137 bits (345), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 73/132 (55%), Positives = 96/132 (72%), Gaps = 2/132 (1%) Query: 41 AELGWDGHWPTLAASLASLRGVAHQMAFQSELVRCEPL-NGGNVCFHLRIPLETLRSSGS 99 A L WDG+WP LAA L +RGVA Q+A QSEL++C P + F L + ++ L ++GS Sbjct: 542 ASLNWDGNWPALAAIL-PVRGVAQQLALQSELLKCGPTPESAQITFDLLVAVDVLLANGS 600 Query: 100 VEKLTAALSERFGKEIRVETEIGAVADTANAVAEAERAERQRQAEHKMKNDPFVVTMMRE 159 EKLTA L E FG+ +R++T IGAV TA+A A A+RAERQR+AE M+ DPFV +MRE Sbjct: 601 AEKLTAVLCEHFGQTVRLQTTIGAVEHTASAAAIADRAERQREAEQSMQEDPFVQKLMRE 660 Query: 160 FGASIVPGSIQP 171 FGA+IVPGS++P Sbjct: 661 FGATIVPGSVKP 672 >ref|YP_001099352.1| DNA polymerase III subunit tau/gamma [Herminiimonas arsenicoxydans] emb|CAL61225.1| DNA polymerase III subunit tau [Contains: DNA polymerase III subunit gamma] [Herminiimonas arsenicoxydans] Length = 682 Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 73/130 (56%), Positives = 95/130 (73%), Gaps = 4/130 (3%) Query: 43 LGWDGHWPTLAASLASLRGVAHQMAFQSELVRCEP-LNGGNVCFHLRIPLETLRSSGSVE 101 L WDG+WP LAASL +RGVA Q+A QSEL++C P + + F L + ++TL ++GSVE Sbjct: 555 LNWDGNWPLLAASL-PVRGVAQQLAQQSELLKCAPGADSSQIQFDLLVAVDTLLAAGSVE 613 Query: 102 KLTAALSERFGKEIRVETEIGAVADTANAVAEAERAERQRQAEHKMKNDPFVVTMMREFG 161 KLTAAL E FG+ +RV T +GAV TANA A A+RAERQ +AE M+ DPFV +MR+FG Sbjct: 614 KLTAALCEHFGQTVRVHTRVGAVEHTANAAAIADRAERQSEAEQSMREDPFVQKLMRDFG 673 Query: 162 ASIVPGSIQP 171 A IV S++P Sbjct: 674 AEIV--SVKP 681 >ref|YP_002981091.1| DNA polymerase III subunits gamma and tau [Ralstonia pickettii 12D] gb|ACS62419.1| DNA polymerase III, subunits gamma and tau [Ralstonia pickettii 12D] Length = 733 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 64/127 (50%), Positives = 83/127 (65%), Gaps = 6/127 (4%) Query: 45 WDGHWPTLAASLASLRGVAHQMAFQSELVRCEPLNGGNVCFHLRIPLETLRSSGSVEKLT 104 +DG+WP LAASL +RG+A Q+A+QSEL E LR+PL L + VE+L Sbjct: 610 FDGNWPALAASL-PIRGLAQQLAYQSELAAVE-----GATMRLRVPLPPLTDANVVERLE 663 Query: 105 AALSERFGKEIRVETEIGAVADTANAVAEAERAERQRQAEHKMKNDPFVVTMMREFGASI 164 AAL+E FG +RV +IGAV TA AV +RAERQR AE + +PFV ++R+F A + Sbjct: 664 AALTEHFGTPVRVACDIGAVRATAAAVDAEQRAERQRNAEDAIATNPFVQALVRDFAAQV 723 Query: 165 VPGSIQP 171 VPGSIQP Sbjct: 724 VPGSIQP 730 >emb|CBJ38440.1| DNA polymerase III subunits gamma and tau [Ralstonia solanacearum CMR15] Length = 763 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 67/127 (52%), Positives = 85/127 (66%), Gaps = 6/127 (4%) Query: 45 WDGHWPTLAASLASLRGVAHQMAFQSELVRCEPLNGGNVCFHLRIPLETLRSSGSVEKLT 104 +DG WPTLAA L LRG+A Q+A QSELV E G V LR+PL L + +E+L Sbjct: 640 FDGDWPTLAARL-PLRGLAQQLAHQSELVSVE---GATV--RLRVPLPALTEANVLERLE 693 Query: 105 AALSERFGKEIRVETEIGAVADTANAVAEAERAERQRQAEHKMKNDPFVVTMMREFGASI 164 AAL+E FG +RV +IGAV TA AV +RA+RQR AE + DPFV ++R+F A++ Sbjct: 694 AALTEHFGTPVRVVCDIGAVRATAAAVDAEQRAQRQRDAESAIAADPFVQALVRDFAATV 753 Query: 165 VPGSIQP 171 VPGSIQP Sbjct: 754 VPGSIQP 760 >ref|ZP_04577428.1| DNA polymerase III gamma and tau [Oxalobacter formigenes HOxBLS] gb|EEO28390.1| DNA polymerase III gamma and tau [Oxalobacter formigenes HOxBLS] Length = 597 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 62/128 (48%), Positives = 82/128 (64%), Gaps = 2/128 (1%) Query: 44 GWDGHWPTLAASLASLRGVAHQMAFQSELVRCEPLNGGNVCFHLRIPLETLRSSGSVEKL 103 GWD +WP LAA L LRG+ Q+A Q+EL+R E V FHL+ P+ TL + +V KL Sbjct: 471 GWDCNWPKLAAEL-PLRGLTQQLAQQTELIRWEKTESSCV-FHLKSPVATLCTPNNVSKL 528 Query: 104 TAALSERFGKEIRVETEIGAVADTANAVAEAERAERQRQAEHKMKNDPFVVTMMREFGAS 163 LS+ FG +++ TEIG V +TAN A RAERQRQAE + DP++ + +EFG Sbjct: 529 GGVLSDYFGCAVKITTEIGKVEETANQNAIEARAERQRQAEEALTADPYLRNLAQEFGGH 588 Query: 164 IVPGSIQP 171 IV GSI+P Sbjct: 589 IVEGSIKP 596 >ref|YP_002259860.1| dna polymerase III subunit gamma/tau (c-terminal fragment) protein [Ralstonia solanacearum IPO1609] emb|CAQ61792.1| probable dna polymerase III subunit gamma/tau (c-terminal fragment) protein [Ralstonia solanacearum IPO1609] Length = 162 Score = 117 bits (292), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 68/127 (53%), Positives = 85/127 (66%), Gaps = 6/127 (4%) Query: 45 WDGHWPTLAASLASLRGVAHQMAFQSELVRCEPLNGGNVCFHLRIPLETLRSSGSVEKLT 104 +DG WPTLAA L LRG+A Q+A QSEL E G V LR+PL L +G VE+L Sbjct: 39 FDGDWPTLAAGL-PLRGLAQQLAHQSELTAVE---GATV--RLRVPLPALTEAGVVERLE 92 Query: 105 AALSERFGKEIRVETEIGAVADTANAVAEAERAERQRQAEHKMKNDPFVVTMMREFGASI 164 AAL+ERFG +RV +IGA TA AV +RA+RQR AE + DPFV ++R+F A++ Sbjct: 93 AALTERFGMPVRVACDIGAARATAAAVDAEQRAQRQRDAEDAIAADPFVQALVRDFAATV 152 Query: 165 VPGSIQP 171 VPGSIQP Sbjct: 153 VPGSIQP 159 >ref|YP_003746041.1| DNA polymerase III subunits gamma and tau [Ralstonia solanacearum CFBP2957] emb|CBJ43434.1| DNA polymerase III subunits gamma and tau [Ralstonia solanacearum CFBP2957] Length = 735 Score = 117 bits (292), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 67/127 (52%), Positives = 84/127 (66%), Gaps = 6/127 (4%) Query: 45 WDGHWPTLAASLASLRGVAHQMAFQSELVRCEPLNGGNVCFHLRIPLETLRSSGSVEKLT 104 +DG WPTLAA L LRG+A Q+A QSEL E V LR+PL L +G VE+L Sbjct: 612 FDGDWPTLAADL-PLRGLAQQLAHQSELTAVE-----GVTVRLRVPLPALTEAGVVERLE 665 Query: 105 AALSERFGKEIRVETEIGAVADTANAVAEAERAERQRQAEHKMKNDPFVVTMMREFGASI 164 AAL+ERFG +RV +IGA TA AV +RA+RQR AE + DPFV ++R+F A++ Sbjct: 666 AALTERFGVPVRVACDIGAARATAAAVDAEQRAQRQRDAEDAIAADPFVQALVRDFAATV 725 Query: 165 VPGSIQP 171 VPGSIQP Sbjct: 726 VPGSIQP 732