BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0004.p (325 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777068.1| GGDEF family protein [Herbaspirillum seroped... 151 1e-34 ref|ZP_04938834.1| Diguanylate cyclase (GGDEF domain) [Burkholde... 108 9e-22 ref|YP_368961.1| diguanylate cyclase with GAF sensor [Burkholder... 106 6e-21 ref|YP_003605687.1| diguanylate cyclase with GAF sensor [Burkhol... 104 1e-20 ref|YP_002230762.1| putative cyclic-di-GMP signaling protein [Bu... 104 2e-20 ref|YP_002911660.1| diguanylate cyclase [Burkholderia glumae BGR... 103 4e-20 ref|YP_001119381.1| diguanylate cyclase with GAF sensor [Burkhol... 102 7e-20 ref|ZP_02886580.1| diguanylate cyclase with GAF sensor [Burkhold... 101 2e-19 ref|YP_004360553.1| Diguanylate cyclase [Burkholderia gladioli B... 100 2e-19 ref|ZP_01165369.1| diguanylate cyclase, putative [Oceanospirillu... 100 4e-19 >ref|YP_003777068.1| GGDEF family protein [Herbaspirillum seropedicae SmR1] gb|ADJ65160.1| GGDEF family protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 73/74 (98%), Positives = 73/74 (98%) Query: 1 MRIAELPANEAARIDALHSLRILDTPREERFDRLTRLARRLFDVPMAVVTMIDVNRQWFK 60 MRIAELPANEAARIDALHSLRILDTPREERFDRLTRLARRLFDVPMAVVTMIDVNRQWFK Sbjct: 1 MRIAELPANEAARIDALHSLRILDTPREERFDRLTRLARRLFDVPMAVVTMIDVNRQWFK 60 Query: 61 SCVGLGDATETSRR 74 SCVGLGDATETSR Sbjct: 61 SCVGLGDATETSRE 74 >ref|ZP_04938834.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184] gb|EAY62005.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184] Length = 335 Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 55/73 (75%), Positives = 63/73 (86%), Gaps = 1/73 (1%) Query: 1 MRIAELPANEAARIDALHSLRILDTPREERFDRLTRLARRLFDVPMAVVTMIDVNRQWFK 60 M+IA PANEAAR+D LHSL ILDTP EERFDRLTRLARRLFDVP+A+V+++D NRQWFK Sbjct: 13 MQIAPKPANEAARLDTLHSLSILDTPPEERFDRLTRLARRLFDVPIALVSLVDENRQWFK 72 Query: 61 SCVGLGDATETSR 73 S GL DAT+T R Sbjct: 73 SHAGL-DATQTPR 84 >ref|YP_368961.1| diguanylate cyclase with GAF sensor [Burkholderia sp. 383] gb|ABB08317.1| diguanylate cyclase with GAF sensor [Burkholderia sp. 383] Length = 323 Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 53/73 (72%), Positives = 63/73 (86%), Gaps = 1/73 (1%) Query: 1 MRIAELPANEAARIDALHSLRILDTPREERFDRLTRLARRLFDVPMAVVTMIDVNRQWFK 60 M+IA PA+EAAR+D LHSL ILDTP EERFDRLTRLARRLFDVP+A+V+++D +RQWFK Sbjct: 1 MQIAPKPADEAARLDTLHSLSILDTPPEERFDRLTRLARRLFDVPIALVSLVDDDRQWFK 60 Query: 61 SCVGLGDATETSR 73 S GL D T+TSR Sbjct: 61 SHAGL-DVTQTSR 72 >ref|YP_003605687.1| diguanylate cyclase with GAF sensor [Burkholderia sp. CCGE1002] gb|ADG16176.1| diguanylate cyclase with GAF sensor [Burkholderia sp. CCGE1002] Length = 326 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 51/73 (69%), Positives = 61/73 (83%), Gaps = 1/73 (1%) Query: 1 MRIAELPANEAARIDALHSLRILDTPREERFDRLTRLARRLFDVPMAVVTMIDVNRQWFK 60 M + P+ E+AR+D LH+L ILDTP EERFDRLTRLARRLF VP+AVV+++D NRQWFK Sbjct: 1 MLVPPTPSTESARLDGLHALHILDTPPEERFDRLTRLARRLFGVPIAVVSLVDANRQWFK 60 Query: 61 SCVGLGDATETSR 73 SCVGL A+ETSR Sbjct: 61 SCVGLA-ASETSR 72 >ref|YP_002230762.1| putative cyclic-di-GMP signaling protein [Burkholderia cenocepacia J2315] emb|CAR51933.1| putative cyclic-di-GMP signaling protein [Burkholderia cenocepacia J2315] Length = 323 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 53/73 (72%), Positives = 62/73 (84%), Gaps = 1/73 (1%) Query: 1 MRIAELPANEAARIDALHSLRILDTPREERFDRLTRLARRLFDVPMAVVTMIDVNRQWFK 60 M+IA PA+EA R+D LHSL ILDTP EERFDRLTRLARRLFDVP+A+V+++D NRQWFK Sbjct: 1 MQIAPKPADEATRLDTLHSLSILDTPPEERFDRLTRLARRLFDVPIALVSLVDENRQWFK 60 Query: 61 SCVGLGDATETSR 73 S GL DAT+T R Sbjct: 61 SRAGL-DATQTPR 72 >ref|YP_002911660.1| diguanylate cyclase [Burkholderia glumae BGR1] gb|ACR28956.1| Diguanylate cyclase [Burkholderia glumae BGR1] Length = 324 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 50/73 (68%), Positives = 61/73 (83%), Gaps = 1/73 (1%) Query: 1 MRIAELPANEAARIDALHSLRILDTPREERFDRLTRLARRLFDVPMAVVTMIDVNRQWFK 60 M+IA LP NEA+R+ LH L +LDTP EERFDR+ RLARR+FDVP+A+V++ID NRQWFK Sbjct: 1 MQIAPLPVNEASRLARLHGLDLLDTPDEERFDRIARLARRIFDVPIALVSLIDANRQWFK 60 Query: 61 SCVGLGDATETSR 73 SC GL +A ETSR Sbjct: 61 SCFGL-EARETSR 72 >ref|YP_001119381.1| diguanylate cyclase with GAF sensor [Burkholderia vietnamiensis G4] gb|ABO54546.1| diguanylate cyclase with GAF sensor [Burkholderia vietnamiensis G4] Length = 323 Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 52/73 (71%), Positives = 62/73 (84%), Gaps = 1/73 (1%) Query: 1 MRIAELPANEAARIDALHSLRILDTPREERFDRLTRLARRLFDVPMAVVTMIDVNRQWFK 60 M+IA PA+E AR+ LHSL ILDTP EERFDR+TRLARRLFDVP+AVV+++D +RQWFK Sbjct: 1 MQIASKPADETARLATLHSLSILDTPPEERFDRITRLARRLFDVPIAVVSLVDEDRQWFK 60 Query: 61 SCVGLGDATETSR 73 S GL DAT+TSR Sbjct: 61 SHPGL-DATQTSR 72 >ref|ZP_02886580.1| diguanylate cyclase with GAF sensor [Burkholderia graminis C4D1M] gb|EDT07809.1| diguanylate cyclase with GAF sensor [Burkholderia graminis C4D1M] Length = 326 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 47/68 (69%), Positives = 59/68 (86%), Gaps = 1/68 (1%) Query: 6 LPANEAARIDALHSLRILDTPREERFDRLTRLARRLFDVPMAVVTMIDVNRQWFKSCVGL 65 +P+NE+ R+D L +L ILDTP EERFDRLTRLA+RLF VP+A+V+++D NRQWFKSCVGL Sbjct: 6 IPSNESTRLDTLRALHILDTPPEERFDRLTRLAKRLFGVPIALVSLVDANRQWFKSCVGL 65 Query: 66 GDATETSR 73 A+ETSR Sbjct: 66 T-ASETSR 72 >ref|YP_004360553.1| Diguanylate cyclase [Burkholderia gladioli BSR3] gb|AEA60597.1| Diguanylate cyclase [Burkholderia gladioli BSR3] Length = 324 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 49/73 (67%), Positives = 61/73 (83%), Gaps = 1/73 (1%) Query: 1 MRIAELPANEAARIDALHSLRILDTPREERFDRLTRLARRLFDVPMAVVTMIDVNRQWFK 60 M A LPA+EA+R+ L SL++LDTP EERFDR+TRLARR+FDVP+A+V+++D NRQWFK Sbjct: 1 MSSAPLPADEASRLAKLRSLQLLDTPDEERFDRITRLARRIFDVPIALVSLVDENRQWFK 60 Query: 61 SCVGLGDATETSR 73 SC GL D ETSR Sbjct: 61 SCFGL-DVRETSR 72 >ref|ZP_01165369.1| diguanylate cyclase, putative [Oceanospirillum sp. MED92] gb|EAR62721.1| diguanylate cyclase, putative [Oceanospirillum sp. MED92] Length = 327 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 46/68 (67%), Positives = 57/68 (83%), Gaps = 1/68 (1%) Query: 6 LPANEAARIDALHSLRILDTPREERFDRLTRLARRLFDVPMAVVTMIDVNRQWFKSCVGL 65 +P +E RID LH L ILDT EERFDRLTRLA+R+FDVP+A+V+++D NRQWFKSC+GL Sbjct: 12 IPKDEDKRIDCLHRLNILDTASEERFDRLTRLAQRIFDVPIALVSLVDTNRQWFKSCMGL 71 Query: 66 GDATETSR 73 DA+ET R Sbjct: 72 -DASETGR 78