BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0049.p (264 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774353.1| nitrilase regulator protein [Herbaspirillum ... 540 e-152 ref|YP_004234912.1| AraC family transcriptional regulator [Acido... 243 2e-62 dbj|BAG31961.1| transcriptional regulator [Pseudomonas chlororap... 234 1e-59 ref|YP_003439545.1| AraC family transcriptional regulator [Klebs... 234 1e-59 ref|ZP_06548896.1| AraC family transcriptional regulator [Klebsi... 232 5e-59 ref|YP_002872776.1| putative AraC family regulatory protein [Pse... 230 1e-58 ref|YP_003933506.1| xyldlegf operon transcriptional activator [P... 229 2e-58 dbj|BAD98527.1| araC/nitR homologue [Pseudomonas sp. K-9] 229 4e-58 ref|YP_001268041.1| helix-turn-helix domain-containing protein [... 226 2e-57 ref|ZP_08142115.1| helix-turn-helix domain-containing protein [P... 226 2e-57 >ref|YP_003774353.1| nitrilase regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62445.1| nitrilase regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 540 bits (1391), Expect = e-152, Method: Compositional matrix adjust. Identities = 264/264 (100%), Positives = 264/264 (100%) Query: 1 MSVNSIGMVDMAIMSSPLHHWRRDAHHIRSNPDDDLWLAFMVSGEAYLAQDGRQARLQSG 60 MSVNSIGMVDMAIMSSPLHHWRRDAHHIRSNPDDDLWLAFMVSGEAYLAQDGRQARLQSG Sbjct: 44 MSVNSIGMVDMAIMSSPLHHWRRDAHHIRSNPDDDLWLAFMVSGEAYLAQDGRQARLQSG 103 Query: 61 DMALYDGARPFEFALGPEKIYLTRLPRKSLLSRCPEAEHLTAQLIDARRPGVMALRSMLE 120 DMALYDGARPFEFALGPEKIYLTRLPRKSLLSRCPEAEHLTAQLIDARRPGVMALRSMLE Sbjct: 104 DMALYDGARPFEFALGPEKIYLTRLPRKSLLSRCPEAEHLTAQLIDARRPGVMALRSMLE 163 Query: 121 EAGTCEFNDAESAVRYSAALLDVLALSLAAPGARTTAAEKNDLYKRVLAYLRENYTDPQL 180 EAGTCEFNDAESAVRYSAALLDVLALSLAAPGARTTAAEKNDLYKRVLAYLRENYTDPQL Sbjct: 164 EAGTCEFNDAESAVRYSAALLDVLALSLAAPGARTTAAEKNDLYKRVLAYLRENYTDPQL 223 Query: 181 NLHVLAAAHHVSERTLTRAFAQHNQTPMDVLRRVRLQASYRALTEGNAGNVTTAALDAGF 240 NLHVLAAAHHVSERTLTRAFAQHNQTPMDVLRRVRLQASYRALTEGNAGNVTTAALDAGF Sbjct: 224 NLHVLAAAHHVSERTLTRAFAQHNQTPMDVLRRVRLQASYRALTEGNAGNVTTAALDAGF 283 Query: 241 SDLSHFSRVFRAAFGCTPQSLLSH 264 SDLSHFSRVFRAAFGCTPQSLLSH Sbjct: 284 SDLSHFSRVFRAAFGCTPQSLLSH 307 >ref|YP_004234912.1| AraC family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX46345.1| transcriptional regulator, AraC family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 311 Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 133/265 (50%), Positives = 183/265 (69%), Gaps = 3/265 (1%) Query: 1 MSVNSIGMVDMAIMSSPLHHWRRDAHHIRSNPDDDLWLAFMVSGEAYLAQDGRQARLQSG 60 + V S+G VD++ M++P HHW R A H+RS PDDDLWLA M GEA + Q R A + G Sbjct: 45 LQVRSLGAVDVSSMAAPSHHWTRAADHLRSGPDDDLWLALMADGEAGIRQHDRCAVMGQG 104 Query: 61 DMALYDGARPFEFALGPEKIYLTRLPRKSLLSRCPEAEHLTAQLIDARRPGVMALRSMLE 120 DM LYD ARPF F L ++L RLPR++LL RCP AE TAQ+IDA +P LR+M+E Sbjct: 105 DMVLYDAARPFGFTLSARSLHLLRLPRRALLQRCPGAERFTAQVIDAGQPAASPLRTMIE 164 Query: 121 EAGTCEFN--DAESAVRYSAALLDVLALSLAAP-GARTTAAEKNDLYKRVLAYLRENYTD 177 +A + +F+ A +A + + LLD++A++L G ++DL+ R++ Y++ ++ D Sbjct: 165 QAASIDFDRTRAHAAAQVGSTLLDLVAVALELQMGGDVGRPGEHDLHGRIVTYIQRHFDD 224 Query: 178 PQLNLHVLAAAHHVSERTLTRAFAQHNQTPMDVLRRVRLQASYRALTEGNAGNVTTAALD 237 P+L L LAAAH VS RT+TRAFA+H QTPM ++ ++RL+AS RAL EG + +VT AA D Sbjct: 225 PELCLDSLAAAHGVSSRTVTRAFARHAQTPMGLVWQLRLEASQRALAEGRSRSVTQAAFD 284 Query: 238 AGFSDLSHFSRVFRAAFGCTPQSLL 262 GFSD+SHFSR FR AFGC P +L+ Sbjct: 285 HGFSDVSHFSRAFRKAFGCAPHTLI 309 >dbj|BAG31961.1| transcriptional regulator [Pseudomonas chlororaphis] Length = 311 Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 117/264 (44%), Positives = 171/264 (64%), Gaps = 3/264 (1%) Query: 1 MSVNSIGMVDMAIMSSPLHHWRRDAHHIRSNPDDDLWLAFMVSGEAYLAQDGRQARLQSG 60 ++VN++G +D+ +SSPLH+W R H+RS P ++LWL F +G + Q GR+A L SG Sbjct: 46 LAVNTLGDLDICSLSSPLHYWERSERHLRSGPAEELWLGFSRNGHGQIEQGGRKANLASG 105 Query: 61 DMALYDGARPFEFALGPEKIYLTRLPRKSLLSRCPEAEHLTAQLIDARRPGVMALRSMLE 120 ++ LYD + F F+ G + +L R+PR L+ R P TA ++D RRPGV+ LR ML Sbjct: 106 NLFLYDATQAFRFSFGGTENHLVRIPRSLLVERLPRIADYTAMVLDDRRPGVIPLREMLR 165 Query: 121 EAGTC--EFNDAESAVRYSAALLDVLALSLAAPGARTTAAEKNDLYKRVLAYLRENYTDP 178 +A + D + RYS+ALLD+L +SL +TT E+ DLY R++ Y++ + T+P Sbjct: 166 QAASTPASLQDEAISNRYSSALLDLLVISLEVQDLKTT-HEELDLYGRIMKYIQRHLTEP 224 Query: 179 QLNLHVLAAAHHVSERTLTRAFAQHNQTPMDVLRRVRLQASYRALTEGNAGNVTTAALDA 238 L++ V+A AH+VS RT+TRAFA++ +TP+ + + RL AS A+ G +V+ AALD Sbjct: 225 DLSIEVIAQAHNVSTRTVTRAFARYQKTPVAEIWKERLNASREAIERGQVRSVSQAALDF 284 Query: 239 GFSDLSHFSRVFRAAFGCTPQSLL 262 GFSD SHFS FR AFG P +LL Sbjct: 285 GFSDFSHFSHAFRKAFGVAPNTLL 308 >ref|YP_003439545.1| AraC family transcriptional regulator [Klebsiella variicola At-22] gb|ADC58513.1| transcriptional regulator, AraC family [Klebsiella variicola At-22] Length = 318 Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 128/264 (48%), Positives = 167/264 (63%), Gaps = 3/264 (1%) Query: 1 MSVNSIGMVDMAIMSSPLHHWRRDAHHIRSNPDDDLWLAFMVSGEAYLAQDGRQARLQSG 60 ++V +G+VDM +S+PLH W R A ++R PDDDLWL +M G L Q GR+A L + Sbjct: 52 LTVRGVGLVDMCSLSAPLHSWDRTARYLRQGPDDDLWLGYMQDGYGQLEQGGRKATLAAD 111 Query: 61 DMALYDGARPFEFALGPEKIYLTRLPRKSLLSRCPEAEHLTAQLIDARRPGVMALRSMLE 120 + LYD A+ F F+LG +L R+PR L P EHLTA ++D RRPGV+ LR ML Sbjct: 112 SLVLYDAAQTFRFSLGGRDNHLVRIPRHLLSCHLPGVEHLTAMVLDDRRPGVIPLREMLR 171 Query: 121 EAGTCE--FNDAESAVRYSAALLDVLALSLAAPGARTTAAEKNDLYKRVLAYLRENYTDP 178 +A N A+ + R+S LLD+L LSL E+ DLY R++ Y+R DP Sbjct: 172 QAAAMPACLNTADISGRFSQTLLDLLVLSLELQDLNNVGVER-DLYSRMMNYIRRQLVDP 230 Query: 179 QLNLHVLAAAHHVSERTLTRAFAQHNQTPMDVLRRVRLQASYRALTEGNAGNVTTAALDA 238 LN+ LA AHHVS RT+TRAFA+H +TPM V+ + RLQAS A+ G +V+ AALD Sbjct: 231 DLNIESLARAHHVSVRTVTRAFARHKKTPMAVIWQERLQASREAIERGRVSSVSQAALDF 290 Query: 239 GFSDLSHFSRVFRAAFGCTPQSLL 262 GFSD SHFS FR AFG +P+SLL Sbjct: 291 GFSDFSHFSHAFRKAFGISPRSLL 314 >ref|ZP_06548896.1| AraC family transcriptional regulator [Klebsiella sp. 1_1_55] gb|EFD86916.1| AraC family transcriptional regulator [Klebsiella sp. 1_1_55] Length = 314 Score = 232 bits (591), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 127/264 (48%), Positives = 167/264 (63%), Gaps = 3/264 (1%) Query: 1 MSVNSIGMVDMAIMSSPLHHWRRDAHHIRSNPDDDLWLAFMVSGEAYLAQDGRQARLQSG 60 ++V +G+VDM +S+PLH W R A ++R PDDDLWL +M G L Q GR+A L + Sbjct: 48 LTVRGVGLVDMCSLSAPLHRWDRTARYLRQGPDDDLWLGYMQDGYGQLEQGGRKATLAAD 107 Query: 61 DMALYDGARPFEFALGPEKIYLTRLPRKSLLSRCPEAEHLTAQLIDARRPGVMALRSMLE 120 + LYD A+ F F+LG +L R+PR L P EHLTA ++D RRPGV+ LR ML Sbjct: 108 SLVLYDAAQTFRFSLGGRDNHLVRIPRHLLSCHLPGVEHLTAMVLDDRRPGVIPLREMLR 167 Query: 121 EAGTCE--FNDAESAVRYSAALLDVLALSLAAPGARTTAAEKNDLYKRVLAYLRENYTDP 178 +A + A+ + R+S LLD+L LSL E+ DLY R++ Y+R DP Sbjct: 168 QAAAMPACLDTADISGRFSQTLLDLLVLSLELQDLNNVGVER-DLYYRMMNYIRRQLVDP 226 Query: 179 QLNLHVLAAAHHVSERTLTRAFAQHNQTPMDVLRRVRLQASYRALTEGNAGNVTTAALDA 238 LN+ LA AHHVS RT+TRAFA+H +TPM V+ + RLQAS A+ G +V+ AALD Sbjct: 227 DLNIESLARAHHVSVRTVTRAFARHKKTPMAVIWQERLQASREAIERGRVSSVSQAALDF 286 Query: 239 GFSDLSHFSRVFRAAFGCTPQSLL 262 GFSD SHFS FR AFG +P+SLL Sbjct: 287 GFSDFSHFSHAFRKAFGISPRSLL 310 >ref|YP_002872776.1| putative AraC family regulatory protein [Pseudomonas fluorescens SBW25] emb|CAY49430.1| putative AraC family regulatory protein [Pseudomonas fluorescens SBW25] Length = 311 Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 115/264 (43%), Positives = 168/264 (63%), Gaps = 3/264 (1%) Query: 1 MSVNSIGMVDMAIMSSPLHHWRRDAHHIRSNPDDDLWLAFMVSGEAYLAQDGRQARLQSG 60 ++VN++G +D+ +SSPLH+W R H+RS P +DLWL F +G + Q R+A L +G Sbjct: 46 LTVNTVGELDICSLSSPLHYWERSEQHLRSGPAEDLWLGFARNGHGQIEQGSRKASLATG 105 Query: 61 DMALYDGARPFEFALGPEKIYLTRLPRKSLLSRCPEAEHLTAQLIDARRPGVMALRSMLE 120 ++ LYD + F F+LG + +L R+PR L R P TA ++D RRPGV+ LR ML Sbjct: 106 NLFLYDATQAFRFSLGGTENHLIRIPRALLTERLPRIAEYTAMVLDDRRPGVVPLREMLH 165 Query: 121 EAGT--CEFNDAESAVRYSAALLDVLALSLAAPGARTTAAEKNDLYKRVLAYLRENYTDP 178 +A + D + RYS+ALLD+L +SL +T+ E DLY R++ Y++ + T+P Sbjct: 166 QAASAPASLQDERISNRYSSALLDLLVISLELQDLKTSHQEM-DLYGRIMQYIQRHLTEP 224 Query: 179 QLNLHVLAAAHHVSERTLTRAFAQHNQTPMDVLRRVRLQASYRALTEGNAGNVTTAALDA 238 L++ +A AH+VS RT+TRAFA++ +TP+ + + RL AS A+ G +V+ AALD Sbjct: 225 DLSIEAIAKAHNVSTRTVTRAFARYQKTPVAEIWKERLNASREAIERGQVRSVSEAALDF 284 Query: 239 GFSDLSHFSRVFRAAFGCTPQSLL 262 GFSD SHFS FR AFG P +LL Sbjct: 285 GFSDFSHFSHAFRKAFGVAPNTLL 308 >ref|YP_003933506.1| xyldlegf operon transcriptional activator [Pantoea vagans C9-1] gb|ADO08160.1| XylDLEGF operon transcriptional activator [Pantoea vagans C9-1] Length = 333 Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 118/264 (44%), Positives = 164/264 (62%), Gaps = 3/264 (1%) Query: 1 MSVNSIGMVDMAIMSSPLHHWRRDAHHIRSNPDDDLWLAFMVSGEAYLAQDGRQARLQSG 60 ++V IG+VD+ ++S LHHW R AHH+RS P DDLWL ++ G L QDGR+A L +G Sbjct: 52 LAVREIGLVDVCTLNSTLHHWERKAHHLRSGPQDDLWLGYIQRGYGQLEQDGRRASLSAG 111 Query: 61 DMALYDGARPFEFALGPEKIYLTRLPRKSLLSRCPEAEHLTAQLIDARRPGVMALRSMLE 120 D+ LYD A+ F F++G +L R+PR L + +TA ++D RPGV+ LR ++ Sbjct: 112 DLVLYDAAQTFRFSIGGSDNHLIRIPRHLLNGQISAGRGMTATILDNNRPGVVPLREIVC 171 Query: 121 EAGTCEF--NDAESAVRYSAALLDVLALSLAAPGARTTAAEKNDLYKRVLAYLRENYTDP 178 A + E A +S +LD+L LS+ AAE DLY RV Y+ N +P Sbjct: 172 LAANNSVLSGNPEMAGHFSQTILDLLTLSVELQSIDKVAAEC-DLYVRVRNYISRNLKNP 230 Query: 179 QLNLHVLAAAHHVSERTLTRAFAQHNQTPMDVLRRVRLQASYRALTEGNAGNVTTAALDA 238 +L+L +A AHHVS RT+TRAFA+H +TP ++ + RL A AL +G A +V+ ALD Sbjct: 231 ELSLESIAKAHHVSVRTVTRAFARHQKTPAAIIWQERLTACRNALVQGGARSVSEIALDH 290 Query: 239 GFSDLSHFSRVFRAAFGCTPQSLL 262 GFSDL+HFS FR AFG TP S++ Sbjct: 291 GFSDLTHFSHAFRKAFGVTPSSVM 314 >dbj|BAD98527.1| araC/nitR homologue [Pseudomonas sp. K-9] Length = 311 Score = 229 bits (583), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 118/264 (44%), Positives = 164/264 (62%), Gaps = 3/264 (1%) Query: 1 MSVNSIGMVDMAIMSSPLHHWRRDAHHIRSNPDDDLWLAFMVSGEAYLAQDGRQARLQSG 60 ++VN++G +D+ +SSPLH+W R H+RS P DDLWL F +G + Q GR+A L +G Sbjct: 46 LAVNALGALDICSLSSPLHYWERSEQHLRSGPADDLWLGFARNGHGQIEQGGRKASLATG 105 Query: 61 DMALYDGARPFEFALGPEKIYLTRLPRKSLLSRCPEAEHLTAQLIDARRPGVMALRSMLE 120 ++ LYD + F F+LG + +L R+PR L R P TA ++D RRPGV+ LR ML Sbjct: 106 NLFLYDATQAFRFSLGGTENHLVRIPRALLSERLPRIADYTAMVLDDRRPGVIPLREMLR 165 Query: 121 EAGTCE--FNDAESAVRYSAALLDVLALSLAAPGARTTAAEKNDLYKRVLAYLRENYTDP 178 A F D + RYS ALLD+L +SL + E DLY R++ Y++ + +P Sbjct: 166 HAANTPAAFQDEGISSRYSEALLDLLVISLELQDLKAVHREL-DLYGRIMQYIQRHLAEP 224 Query: 179 QLNLHVLAAAHHVSERTLTRAFAQHNQTPMDVLRRVRLQASYRALTEGNAGNVTTAALDA 238 L++ V+A AH+VS RT+TRAFA++ +TP + R RL AS A+ G +V+ AALD Sbjct: 225 DLSIEVIAQAHNVSTRTVTRAFARYQKTPAAEIWRERLNASREAIERGQVRSVSQAALDF 284 Query: 239 GFSDLSHFSRVFRAAFGCTPQSLL 262 GFSD SHFS FR AFG P +LL Sbjct: 285 GFSDFSHFSHAFRKAFGVAPNTLL 308 >ref|YP_001268041.1| helix-turn-helix domain-containing protein [Pseudomonas putida F1] gb|ABQ78857.1| transcriptional regulator, AraC family [Pseudomonas putida F1] Length = 313 Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 114/264 (43%), Positives = 167/264 (63%), Gaps = 3/264 (1%) Query: 1 MSVNSIGMVDMAIMSSPLHHWRRDAHHIRSNPDDDLWLAFMVSGEAYLAQDGRQARLQSG 60 + VN IG +D+ +SSPLHHW R H+RS+P +D+WL + G + Q R+ARL +G Sbjct: 46 LQVNGIGPLDVTTLSSPLHHWVRSEQHLRSDPAEDIWLGVTLDGYGEIEQHNRKARLTAG 105 Query: 61 DMALYDGARPFEFALGPEKIYLTRLPRKSLLSRCPEAEHLTAQLIDARRPGVMALRSMLE 120 ++ LYD +PF F+LG + +L R+PR L R P +TA +++ RPGV+ LR M+ Sbjct: 106 NVFLYDATQPFRFSLGGTENHLIRIPRPLLAQRVPHIADITALVLEEGRPGVIPLRQMIG 165 Query: 121 EAGTCE--FNDAESAVRYSAALLDVLALSLAAPGARTTAAEKNDLYKRVLAYLRENYTDP 178 +A + D + RYS ++D+L LSL +TT E DLY R++ Y++ + T+P Sbjct: 166 QAASSAPLLQDEGVSRRYSNTIVDLLVLSLELQDLKTTHREL-DLYGRIMNYIQRHLTEP 224 Query: 179 QLNLHVLAAAHHVSERTLTRAFAQHNQTPMDVLRRVRLQASYRALTEGNAGNVTTAALDA 238 +L++ +A AHHVS RT+TRAFA+H ++P+ + + RL AS A+ G +V+ AAL+ Sbjct: 225 ELSIESIALAHHVSTRTVTRAFARHQKSPVAEIWKERLNASRAAIECGQVRSVSQAALEY 284 Query: 239 GFSDLSHFSRVFRAAFGCTPQSLL 262 GFSD SHFS FR AFG P SLL Sbjct: 285 GFSDFSHFSHAFRKAFGVAPHSLL 308 >ref|ZP_08142115.1| helix-turn-helix domain-containing protein [Pseudomonas sp. TJI-51] gb|EGB96595.1| helix-turn-helix domain-containing protein [Pseudomonas sp. TJI-51] Length = 313 Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 113/264 (42%), Positives = 167/264 (63%), Gaps = 3/264 (1%) Query: 1 MSVNSIGMVDMAIMSSPLHHWRRDAHHIRSNPDDDLWLAFMVSGEAYLAQDGRQARLQSG 60 + V+ IG +D+ +SSPLHHW R H+R +P +D+WL F + G + Q R+A L +G Sbjct: 46 LQVHGIGPLDITTLSSPLHHWVRSEQHLRGDPAEDIWLGFTLDGYGEIEQHTRKASLTTG 105 Query: 61 DMALYDGARPFEFALGPEKIYLTRLPRKSLLSRCPEAEHLTAQLIDARRPGVMALRSMLE 120 + LYD +PF F+LG + +L R+PR L R P LTA+++D RPGV+ LR M+ Sbjct: 106 SVFLYDATQPFRFSLGGTENHLIRIPRPLLSQRLPGIADLTARVLDESRPGVIPLRQMIG 165 Query: 121 EAGTCE--FNDAESAVRYSAALLDVLALSLAAPGARTTAAEKNDLYKRVLAYLRENYTDP 178 +A + + + RYS+ ++D+L LSL +TT E DLY R++ Y++ + T+P Sbjct: 166 QAASSAALLQNESISRRYSSTIIDLLVLSLELQDLKTTHQEL-DLYGRIMNYIQRHLTEP 224 Query: 179 QLNLHVLAAAHHVSERTLTRAFAQHNQTPMDVLRRVRLQASYRALTEGNAGNVTTAALDA 238 +L++ +A AHHVS RT+TRAFA+H ++P+ + + RL AS A+ G +V+ AAL+ Sbjct: 225 ELSIESIAVAHHVSTRTVTRAFARHQKSPVAEIWKERLNASRAAIERGQVRSVSQAALEF 284 Query: 239 GFSDLSHFSRVFRAAFGCTPQSLL 262 GFSD SHFS FR AFG P SLL Sbjct: 285 GFSDFSHFSHAFRKAFGEAPHSLL 308