BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0039.p (247 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774365.1| AraC family transcription regulator protein ... 504 e-141 ref|YP_785695.1| AraC family transcriptional regulator [Bordetel... 380 e-104 ref|YP_002986915.1| AraC family transcriptional regulator [Dicke... 377 e-103 ref|YP_003881369.1| AraC family transcriptional regulator [Dicke... 369 e-100 ref|YP_003332168.1| AraC protein arabinose-binding/dimerization ... 366 1e-99 ref|YP_003017907.1| AraC family transcriptional regulator [Pecto... 295 4e-78 ref|YP_261221.2| AraC family transcriptional regulator [Pseudomo... 239 4e-61 ref|ZP_03543480.1| transcriptional regulator, AraC family [Comam... 237 1e-60 ref|ZP_07045992.1| transcriptional regulator, AraC family protei... 236 3e-60 ref|YP_003278133.1| AraC family transcriptional regulator [Comam... 234 6e-60 >ref|YP_003774365.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62457.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 271 Score = 504 bits (1299), Expect = e-141, Method: Compositional matrix adjust. Identities = 247/247 (100%), Positives = 247/247 (100%) Query: 1 VFGVSGRYPAGSVVPMHQHPQGHLIYADSGLLRVQAESGQWLVPPTAAVWLRSGVAHSLA 60 VFGVSGRYPAGSVVPMHQHPQGHLIYADSGLLRVQAESGQWLVPPTAAVWLRSGVAHSLA Sbjct: 25 VFGVSGRYPAGSVVPMHQHPQGHLIYADSGLLRVQAESGQWLVPPTAAVWLRSGVAHSLA 84 Query: 61 MPVTLQAYGLFVRQDVCARLPAFDCVVHVSPLLRELIITLAQAREENMSAKRMRLLGALV 120 MPVTLQAYGLFVRQDVCARLPAFDCVVHVSPLLRELIITLAQAREENMSAKRMRLLGALV Sbjct: 85 MPVTLQAYGLFVRQDVCARLPAFDCVVHVSPLLRELIITLAQAREENMSAKRMRLLGALV 144 Query: 121 MEEVLTQPTLPFHLPWPMSETDGPMARLCQALLDDPGDMATAAEWADRLAMGQKTFHRRF 180 MEEVLTQPTLPFHLPWPMSETDGPMARLCQALLDDPGDMATAAEWADRLAMGQKTFHRRF Sbjct: 145 MEEVLTQPTLPFHLPWPMSETDGPMARLCQALLDDPGDMATAAEWADRLAMGQKTFHRRF 204 Query: 181 LQSTGMTFGKWRQQLRLMSSLPLLMQGMPITQVALASGYDSHSAYTTAFGKQFGKPPSAF 240 LQSTGMTFGKWRQQLRLMSSLPLLMQGMPITQVALASGYDSHSAYTTAFGKQFGKPPSAF Sbjct: 205 LQSTGMTFGKWRQQLRLMSSLPLLMQGMPITQVALASGYDSHSAYTTAFGKQFGKPPSAF 264 Query: 241 FPAREPC 247 FPAREPC Sbjct: 265 FPAREPC 271 >ref|YP_785695.1| AraC family transcriptional regulator [Bordetella avium 197N] emb|CAJ48781.1| putative AraC-family transcriptional regulator [Bordetella avium 197N] Length = 266 Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust. Identities = 187/244 (76%), Positives = 205/244 (84%), Gaps = 2/244 (0%) Query: 1 VFGVSGRYPAGSVVPMHQHPQGHLIYADSGLLRVQAESGQWLVPPTAAVWLRSGVAHSLA 60 VFGV+ YPAG VVP H+HP GHLIYAD GLLRV+AESGQWLVPPTAAVWLRS V+H L Sbjct: 25 VFGVTVHYPAGHVVPRHKHPYGHLIYADRGLLRVEAESGQWLVPPTAAVWLRSDVSHQLL 84 Query: 61 MPVTLQAYGLFVRQDVCARLPAFDCVVHVSPLLRELIITLAQAREENMSAKRMRLLGALV 120 MPV LQA+GLFVR+D+C R+PA DCVVHVS L+RELI+ LA E+ S+KR+RLLGAL+ Sbjct: 85 MPVALQAHGLFVRKDICVRMPARDCVVHVSGLMRELIMALAG--EQAKSSKRLRLLGALL 142 Query: 121 MEEVLTQPTLPFHLPWPMSETDGPMARLCQALLDDPGDMATAAEWADRLAMGQKTFHRRF 180 +EEV QP LP HLPWP DGPM R+CQALLD PGD ATAAEWADRLAM KTFHR F Sbjct: 143 VEEVHAQPVLPLHLPWPTGTADGPMQRVCQALLDRPGDAATAAEWADRLAMSDKTFHRHF 202 Query: 181 LQSTGMTFGKWRQQLRLMSSLPLLMQGMPITQVALASGYDSHSAYTTAFGKQFGKPPSAF 240 L+STGMTFGKWRQQLRLMSSL LLMQG PITQVALASGYDSHSAYTTAF KQFG+PPSAF Sbjct: 203 LRSTGMTFGKWRQQLRLMSSLTLLMQGTPITQVALASGYDSHSAYTTAFSKQFGQPPSAF 262 Query: 241 FPAR 244 R Sbjct: 263 STNR 266 >ref|YP_002986915.1| AraC family transcriptional regulator [Dickeya dadantii Ech703] gb|ACS85093.1| transcriptional regulator, AraC family [Dickeya dadantii Ech703] Length = 268 Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust. Identities = 182/244 (74%), Positives = 203/244 (83%) Query: 1 VFGVSGRYPAGSVVPMHQHPQGHLIYADSGLLRVQAESGQWLVPPTAAVWLRSGVAHSLA 60 VFGV+ RYPAG VVP+H H GHLIYA+ GLLRV+AESGQWLVPPTAAVWLRSGVAH L Sbjct: 25 VFGVTVRYPAGHVVPLHTHAHGHLIYANRGLLRVEAESGQWLVPPTAAVWLRSGVAHRLV 84 Query: 61 MPVTLQAYGLFVRQDVCARLPAFDCVVHVSPLLRELIITLAQAREENMSAKRMRLLGALV 120 +PV LQA+GLFVR DVCARLPA DCVVHVS LLRELI+ L QA ++R+RLL AL+ Sbjct: 85 VPVALQAHGLFVRDDVCARLPAADCVVHVSALLRELIMALTQADSPTTPSQRIRLLSALL 144 Query: 121 MEEVLTQPTLPFHLPWPMSETDGPMARLCQALLDDPGDMATAAEWADRLAMGQKTFHRRF 180 +EE+ QP LP HLPWP + D P+ +CQALLD+P + ATAAEWAD+LAM KTFHR F Sbjct: 145 VEELHNQPVLPLHLPWPTGDADSPIPHVCQALLDNPCNAATAAEWADKLAMADKTFHRHF 204 Query: 181 LQSTGMTFGKWRQQLRLMSSLPLLMQGMPITQVALASGYDSHSAYTTAFGKQFGKPPSAF 240 +QSTGMTFGKWRQQLRLMSSL LLMQGMPITQVALASGYDSHSAYTTAF KQFG+PPSAF Sbjct: 205 IQSTGMTFGKWRQQLRLMSSLTLLMQGMPITQVALASGYDSHSAYTTAFSKQFGQPPSAF 264 Query: 241 FPAR 244 R Sbjct: 265 AANR 268 >ref|YP_003881369.1| AraC family transcriptional regulator [Dickeya dadantii 3937] gb|ADM96812.1| Transcriptional regulator, AraC family [Dickeya dadantii 3937] Length = 267 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 178/244 (72%), Positives = 205/244 (84%), Gaps = 1/244 (0%) Query: 1 VFGVSGRYPAGSVVPMHQHPQGHLIYADSGLLRVQAESGQWLVPPTAAVWLRSGVAHSLA 60 VFGV+ YPAG VVP+H HP GH+IYAD GLLRV+AESGQWLVPPTAAVWLR GVAH L Sbjct: 25 VFGVAVHYPAGHVVPLHHHPYGHVIYADRGLLRVEAESGQWLVPPTAAVWLRPGVAHRLV 84 Query: 61 MPVTLQAYGLFVRQDVCARLPAFDCVVHVSPLLRELIITLAQAREENMSAKRMRLLGALV 120 +PV+LQA GLFVR++V RLP DCVVHVS LLRELI+ L++ + S++RM LLGAL+ Sbjct: 85 VPVSLQACGLFVREEVFDRLPTVDCVVHVSGLLRELIMALSRVDDPTASSRRMHLLGALL 144 Query: 121 MEEVLTQPTLPFHLPWPMSETDGPMARLCQALLDDPGDMATAAEWADRLAMGQKTFHRRF 180 +EE+ TQP LP HLPWPM E + PM R+CQ LLD+PGD ATA +WA+RL+MG KTFHRRF Sbjct: 145 VEELHTQPVLPLHLPWPMGENN-PMLRVCQTLLDNPGDAATATQWANRLSMGDKTFHRRF 203 Query: 181 LQSTGMTFGKWRQQLRLMSSLPLLMQGMPITQVALASGYDSHSAYTTAFGKQFGKPPSAF 240 L+STGMTFG+WRQQLRLMSSL LLMQGMPITQVALASGYDSHSAY+TAF KQFG+PPS F Sbjct: 204 LRSTGMTFGRWRQQLRLMSSLTLLMQGMPITQVALASGYDSHSAYSTAFSKQFGQPPSVF 263 Query: 241 FPAR 244 R Sbjct: 264 VATR 267 >ref|YP_003332168.1| AraC protein arabinose-binding/dimerization [Dickeya dadantii Ech586] gb|ACZ75463.1| AraC protein arabinose-binding/dimerization [Dickeya dadantii Ech586] Length = 267 Score = 366 bits (940), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 178/244 (72%), Positives = 204/244 (83%), Gaps = 1/244 (0%) Query: 1 VFGVSGRYPAGSVVPMHQHPQGHLIYADSGLLRVQAESGQWLVPPTAAVWLRSGVAHSLA 60 VFGV+ YPAG VVP+HQHP GH+IYAD GLLRV+AESGQWLVPPTAAVWLR GVAH L Sbjct: 25 VFGVAVHYPAGHVVPLHQHPYGHVIYADRGLLRVEAESGQWLVPPTAAVWLRPGVAHRLV 84 Query: 61 MPVTLQAYGLFVRQDVCARLPAFDCVVHVSPLLRELIITLAQAREENMSAKRMRLLGALV 120 PV+LQA GLFVR++V RLP DCVVHVS LLRELI+ L++ + S++RM LLGAL+ Sbjct: 85 APVSLQACGLFVREEVVDRLPTVDCVVHVSGLLRELIMALSRVDDPIASSRRMHLLGALL 144 Query: 121 MEEVLTQPTLPFHLPWPMSETDGPMARLCQALLDDPGDMATAAEWADRLAMGQKTFHRRF 180 +EE+ TQP LP HLPWPM E + PM R+CQ LLD+PGD ATA +WA LAMG+KTFHRRF Sbjct: 145 VEELHTQPVLPLHLPWPMGENN-PMLRVCQTLLDNPGDAATATQWAGLLAMGEKTFHRRF 203 Query: 181 LQSTGMTFGKWRQQLRLMSSLPLLMQGMPITQVALASGYDSHSAYTTAFGKQFGKPPSAF 240 +QSTGMTFG+WRQQLRLMSSL LLMQG+PITQVALASGYDSHSAY+TAF KQFG+PPS F Sbjct: 204 IQSTGMTFGRWRQQLRLMSSLTLLMQGIPITQVALASGYDSHSAYSTAFSKQFGQPPSVF 263 Query: 241 FPAR 244 R Sbjct: 264 VATR 267 >ref|YP_003017907.1| AraC family transcriptional regulator [Pectobacterium carotovorum subsp. carotovorum PC1] gb|ACT13371.1| transcriptional regulator, AraC family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 270 Score = 295 bits (755), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 151/240 (62%), Positives = 183/240 (76%), Gaps = 3/240 (1%) Query: 1 VFGVSGRYPAGSVVPMHQHPQGHLIYADSGLLRVQAESGQWLVPPTAAVWLRSGVAHSLA 60 V GV+ RYP G +VPMH H +GHLIYADSG+LRV+ +GQWLVPPT+AVWLR GV H L Sbjct: 25 VTGVAIRYPQGHIVPMHDHRRGHLIYADSGVLRVETPTGQWLVPPTSAVWLRPGVPHRLV 84 Query: 61 MPVTLQAYGLFVRQDVCARLPAFDCVVHVSPLLRELIITLAQAREENMSAKRMRLLGALV 120 +PV LQA+G+FVR+D+C LP DCVV VS L RELI L +++ +LLG L+ Sbjct: 85 IPVALQAHGIFVREDICTMLPTVDCVVRVSGLARELIGKLTDRDGHERTSRYTQLLGELL 144 Query: 121 MEEVLTQPTLPFHLPWPMSETDGPMARLCQALLDDPGDMATAAEWADRLAMGQKTFHRRF 180 +EE+ P LPF+LPWP D M +CQ L++DPG +ATA +WA +LA+ KTFHRRF Sbjct: 145 IEELRAPPHLPFYLPWPQ---DAQMQTVCQTLMNDPGYIATADDWAGKLAVSGKTFHRRF 201 Query: 181 LQSTGMTFGKWRQQLRLMSSLPLLMQGMPITQVALASGYDSHSAYTTAFGKQFGKPPSAF 240 L+STGMTFGKWRQQLRL+SSL +L+QG PI QVAL SGYDSHSAYTTAF KQFG+ PSAF Sbjct: 202 LKSTGMTFGKWRQQLRLISSLTMLVQGAPIIQVALNSGYDSHSAYTTAFRKQFGQSPSAF 261 >ref|YP_261221.2| AraC family transcriptional regulator [Pseudomonas fluorescens Pf-5] gb|AAY93385.2| transcriptional regulator, AraC family [Pseudomonas fluorescens Pf-5] Length = 276 Score = 239 bits (609), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 118/241 (48%), Positives = 152/241 (63%), Gaps = 3/241 (1%) Query: 1 VFGVSGRYPAGSVVPMHQHPQGHLIYADSGLLRVQAESGQWLVPPTAAVWLRSGVAHSLA 60 V ++ YP G +P H HP+ L YA G+L + ESG+W+VPP+ VWL++GV H + Sbjct: 38 VTSIAVDYPNGHEIPAHSHPRSQLAYAIEGVLVIDTESGRWVVPPSRGVWLQAGVEHRVR 97 Query: 61 MPVTLQAYGLFVRQDVCARLPAFDCVVHVSPLLRELIITLAQAREENMSAKRMRLLGALV 120 M ++ LF+ D A LP DCV+ VSPLLRELI+ AQ R L L+ Sbjct: 98 MRGAVRMRSLFINVDAIAGLPEHDCVIEVSPLLRELILAAAQVGTHYSPDSRDGRLMRLI 157 Query: 121 MEEVLTQPTLPFHLPWPMSETDGPMARLCQALLDDPGDMATAAEWADRLAMGQKTFHRRF 180 ++E+ + P LPF LPWP M R+CQAL DDP D TA +W D LAM KTFHR+F Sbjct: 158 LDEMRSLPVLPFSLPWPHEPR---MLRVCQALADDPSDNRTAEQWGDCLAMSAKTFHRQF 214 Query: 181 LQSTGMTFGKWRQQLRLMSSLPLLMQGMPITQVALASGYDSHSAYTTAFGKQFGKPPSAF 240 + TG+TFG+WRQQ RL+ SL L +GMP+ QVAL GYDS SA+ AF +QFG PPS F Sbjct: 215 QRHTGITFGRWRQQARLLMSLECLAEGMPVVQVALQHGYDSQSAFAAAFKRQFGTPPSEF 274 Query: 241 F 241 + Sbjct: 275 Y 275 >ref|ZP_03543480.1| transcriptional regulator, AraC family [Comamonas testosteroni KF-1] gb|EED67766.1| transcriptional regulator, AraC family [Comamonas testosteroni KF-1] Length = 271 Score = 237 bits (605), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 126/240 (52%), Positives = 162/240 (67%), Gaps = 3/240 (1%) Query: 1 VFGVSGRYPAGSVVPMHQHPQGHLIYADSGLLRVQAESGQWLVPPTAAVWLRSGVAHSLA 60 V GV RYP G VVP H H +GHLIYA G+L V++ GQWLVPPT AVWLR G+ H + Sbjct: 25 VTGVEQRYPPGHVVPQHSHARGHLIYASEGVLLVESPGGQWLVPPTTAVWLRPGMLHRIT 84 Query: 61 MPVTLQAYGLFVRQDVCARLPAFDCVVHVSPLLRELIITLAQAREENMSAKRMRLLGALV 120 ++A+GLF+ + RLPA DCV+HVSPL+REL+ L + R LLG L+ Sbjct: 85 ATTAVRAFGLFIEEVWSERLPARDCVLHVSPLVRELMAALVDLPHQGPHRPRDALLGNLL 144 Query: 121 MEEVLTQPTLPFHLPWPMSETDGPMARLCQALLDDPGDMATAAEWADRLAMGQKTFHRRF 180 +EE+ LP++LPWP D M R+C+++L P T A + A+ KT HRRF Sbjct: 145 LEELQALAPLPYYLPWP---EDMLMRRICESMLGAPAQRTTVEALARQHALTPKTLHRRF 201 Query: 181 LQSTGMTFGKWRQQLRLMSSLPLLMQGMPITQVALASGYDSHSAYTTAFGKQFGKPPSAF 240 L+STGM +G+W QQ+RLM+S+P L+QGMPIT VAL SGY+SHSAY+ AF KQFG+PPS F Sbjct: 202 LKSTGMNWGRWYQQMRLMASIPQLLQGMPITTVALESGYESHSAYSAAFRKQFGRPPSEF 261 >ref|ZP_07045992.1| transcriptional regulator, AraC family protein [Comamonas testosteroni S44] gb|EFI60374.1| transcriptional regulator, AraC family protein [Comamonas testosteroni S44] Length = 271 Score = 236 bits (601), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 127/240 (52%), Positives = 163/240 (67%), Gaps = 3/240 (1%) Query: 1 VFGVSGRYPAGSVVPMHQHPQGHLIYADSGLLRVQAESGQWLVPPTAAVWLRSGVAHSLA 60 V GV RYP G VVP H H +GHLIYA G+L V++ SGQWLVPPT AVWLR G+ H + Sbjct: 25 VTGVEQRYPPGHVVPQHSHARGHLIYASEGVLLVESPSGQWLVPPTTAVWLRPGMLHGIT 84 Query: 61 MPVTLQAYGLFVRQDVCARLPAFDCVVHVSPLLRELIITLAQAREENMSAKRMRLLGALV 120 ++AYGLFV + A+LPA D V+HV+PL+REL+ L E R LLG+L+ Sbjct: 85 ATTAVRAYGLFVDEAWSAQLPARDGVLHVAPLVRELMTALVALPHEGPHRPRDALLGSLL 144 Query: 121 MEEVLTQPTLPFHLPWPMSETDGPMARLCQALLDDPGDMATAAEWADRLAMGQKTFHRRF 180 +EE+ LP++LPWP D M R+C+++L P T A + A+ KT HRRF Sbjct: 145 LEELSALAPLPYYLPWPQ---DALMRRICESMLSAPAQRTTVEALARQHALTPKTLHRRF 201 Query: 181 LQSTGMTFGKWRQQLRLMSSLPLLMQGMPITQVALASGYDSHSAYTTAFGKQFGKPPSAF 240 L+STGM +G+W QQ+RLM+S+P L+QGM IT VAL SGY+SHSAYT AF +QFG+PPS F Sbjct: 202 LKSTGMNWGRWYQQMRLMASIPQLLQGMAITTVALESGYESHSAYTAAFRRQFGRPPSEF 261 >ref|YP_003278133.1| AraC family transcriptional regulator [Comamonas testosteroni CNB-2] gb|ACY32837.1| transcriptional regulator, AraC family [Comamonas testosteroni CNB-2] Length = 271 Score = 234 bits (598), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 126/240 (52%), Positives = 163/240 (67%), Gaps = 3/240 (1%) Query: 1 VFGVSGRYPAGSVVPMHQHPQGHLIYADSGLLRVQAESGQWLVPPTAAVWLRSGVAHSLA 60 V GV RYP G VVP H H +GHLIYA G+L V++ SGQWLVPPT AVWLR G+ H + Sbjct: 25 VTGVEQRYPPGHVVPQHSHARGHLIYASEGVLLVESPSGQWLVPPTTAVWLRPGMLHQIT 84 Query: 61 MPVTLQAYGLFVRQDVCARLPAFDCVVHVSPLLRELIITLAQAREENMSAKRMRLLGALV 120 ++AYGLFV + A+LPA D V+HV+PL+REL+ L E R LLG+L+ Sbjct: 85 ATTAVRAYGLFVDEAWSAQLPARDGVLHVAPLVRELMTALVALPHEGPHRPRDALLGSLL 144 Query: 121 MEEVLTQPTLPFHLPWPMSETDGPMARLCQALLDDPGDMATAAEWADRLAMGQKTFHRRF 180 +EE+ LP++LPWP D M R+C+++L P T A + A+ KT HRRF Sbjct: 145 LEELSALAPLPYYLPWPQ---DALMRRICESMLSAPAQRTTVEALARQHALTPKTLHRRF 201 Query: 181 LQSTGMTFGKWRQQLRLMSSLPLLMQGMPITQVALASGYDSHSAYTTAFGKQFGKPPSAF 240 L+STGM +G+W QQ+RLM+S+P L+QGM IT VAL SGY+SHSAY+ AF +QFG+PPS F Sbjct: 202 LKSTGMNWGRWYQQMRLMASIPQLLQGMAITTVALESGYESHSAYSAAFRRQFGRPPSEF 261