BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0037.p (577 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774367.1| hypothetical protein Hsero_0942 [Herbaspiril... 1141 0.0 ref|XP_002537597.1| conserved hypothetical protein [Ricinus comm... 398 e-108 ref|XP_002539318.1| conserved hypothetical protein [Ricinus comm... 279 8e-73 ref|NP_746174.1| hypothetical protein PP_4048 [Pseudomonas putid... 198 2e-48 ref|YP_004702880.1| hypothetical protein PPS_3453 [Pseudomonas p... 167 4e-39 ref|YP_001859819.1| hypothetical protein Bphy_3637 [Burkholderia... 84 5e-14 ref|YP_001859821.1| hypothetical protein Bphy_3639 [Burkholderia... 84 5e-14 ref|YP_434941.1| Rhs family protein [Hahella chejuensis KCTC 239... 82 2e-13 ref|ZP_03824682.1| conserved hypothetical protein [Acinetobacter... 73 1e-10 ref|ZP_02382590.1| hypothetical protein BuboB_33000 [Burkholderi... 69 2e-09 >ref|YP_003774367.1| hypothetical protein Hsero_0942 [Herbaspirillum seropedicae SmR1] gb|ADJ62459.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 577 Score = 1141 bits (2951), Expect = 0.0, Method: Compositional matrix adjust. Identities = 574/577 (99%), Positives = 576/577 (99%) Query: 1 VSQDKDEHSILDDAWSSVVGGMDWLKSVLFGEFADNRPLSAVVADMLVSFVPGVVIVTSA 60 +SQDKDEHSILDDAWSSVVGGMDWLKSVLFGEFADNRPLSAVVADMLVSFVPGVVIVTSA Sbjct: 1 MSQDKDEHSILDDAWSSVVGGMDWLKSVLFGEFADNRPLSAVVADMLVSFVPGVVIVTSA 60 Query: 61 RDAVAVILRMASHPEKREDIMEWVLLSACLIVIALPLAMAAGGAAAAGVGAIVGGLAGSE 120 RDAVAVILRMASHPEKREDIMEWVLLSACLIVIALPLAMAAGGAAAAGVGAIVGGLAGSE Sbjct: 61 RDAVAVILRMASHPEKREDIMEWVLLSACLIVIALPLAMAAGGAAAAGVGAIVGGLAGSE 120 Query: 121 LGAALRSVMLLLIKEASKLVELVRFLQKFIKGDVMKFLRAVKFAPYEKALMAALRKFSGK 180 LGAALRSVMLLLIKEASKLVELVRFLQKFIKGDVMKFLRAVKFAPYEKALMAALRKFSGK Sbjct: 121 LGAALRSVMLLLIKEASKLVELVRFLQKFIKGDVMKFLRAVKFAPYEKALMAALRKFSGK 180 Query: 181 LLSMVKSLRVHLESLSYFNVVKHRIAILAEWERKFYAVQQEALNKIPKALAELDARLAKV 240 LLSMVKSLRVHLESLSYFN+VKHRIAILAEWERKFYAVQQEALNKIPKALAELDARLAKV Sbjct: 181 LLSMVKSLRVHLESLSYFNLVKHRIAILAEWERKFYAVQQEALNKIPKALAELDARLAKV 240 Query: 241 LAEAAPQEAHTASAGVQASKAAPPKPPTQRVRDTPGQVLPKETPAAAPHAAPAAKSEALP 300 LAEAAPQEAHTASAGVQASKAAPPKPPTQRVRDTPGQVLPKETPAAAPHAAPAAKSEALP Sbjct: 241 LAEAAPQEAHTASAGVQASKAAPPKPPTQRVRDTPGQVLPKETPAAAPHAAPAAKSEALP 300 Query: 301 ARPGTKPAGKPAAKPAAKPAAKTAPKAADGAGGKPPLKDKPDLVDPAKPGPNGKKQAVVD 360 ARPGTKPAGKPAAKPAAKPAAKTAPKAADGAGGKPPLKDKPD VDPAKPGPNGKKQAVVD Sbjct: 301 ARPGTKPAGKPAAKPAAKPAAKTAPKAADGAGGKPPLKDKPDPVDPAKPGPNGKKQAVVD 360 Query: 361 AAAAADRARITQLSNEADAAAKAGDQALAAAKLEEARSILRPYLPKNPGDSWDEVVKRLD 420 AAAAADRARITQLSNEADAAAKAGDQALAAAKLEEARSILRPYLPKNPGDSWDEVVKRLD Sbjct: 361 AAAAADRARITQLSNEADAAAKAGDQALAAAKLEEARSILRPYLPKNPGDSWDEVVKRLD 420 Query: 421 VSSPKDGAVFWSGTSGQASKLGQVDAARAYAEKIGGVTLETTPGGRIIDGWDDVNKAYPW 480 VSSPKDGAVFWSGTSGQASKLGQVDAARAYAEKIGGVTLETTPGGRIIDGWDDVNKAYPW Sbjct: 421 VSSPKDGAVFWSGTSGQASKLGQVDAARAYAEKIGGVTLETTPGGRIIDGWDDVNKAYPW 480 Query: 481 NASGGQPGPYASGLWGSVSEKYANGASGVVNVVQTPEKLWDAGTVWHNSEKPLLMDLKKT 540 NASGGQPGPYASGLWGSVSEKYANGASGVVNVVQTPEKLWDAGTVWHNSEKPLLMDLKKT Sbjct: 481 NASGGQPGPYASGLWGSVSEKYANGASGVVNVVQTPEKLWDAGTVWHNSEKPLLMDLKKT 540 Query: 541 TGQITDIKMHVVDLGGQSHPLSDNYIGDLLKFDQRKP 577 TGQITDIKMHVVDLGGQSHPLSDNYIGDLLKFDQRKP Sbjct: 541 TGQITDIKMHVVDLGGQSHPLSDNYIGDLLKFDQRKP 577 >ref|XP_002537597.1| conserved hypothetical protein [Ricinus communis] gb|EEF24785.1| conserved hypothetical protein [Ricinus communis] Length = 312 Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust. Identities = 225/275 (81%), Positives = 248/275 (90%) Query: 7 EHSILDDAWSSVVGGMDWLKSVLFGEFADNRPLSAVVADMLVSFVPGVVIVTSARDAVAV 66 E SIL+DAW VVGGMDWLKSVLFGEFAD+RPLSAVVADMLVSF+PGVVIVTSARDAVAV Sbjct: 6 EQSILEDAWGQVVGGMDWLKSVLFGEFADHRPLSAVVADMLVSFIPGVVIVTSARDAVAV 65 Query: 67 ILRMASHPEKREDIMEWVLLSACLIVIALPLAMAAGGAAAAGVGAIVGGLAGSELGAALR 126 ILR+A+HPEKRED+MEWVLLSACLIVIALPLAMAAGGAAAAGVGA+VGG+AGSELGAALR Sbjct: 66 ILRLANHPEKREDLMEWVLLSACLIVIALPLAMAAGGAAAAGVGAMVGGIAGSELGAALR 125 Query: 127 SVMLLLIKEASKLVELVRFLQKFIKGDVMKFLRAVKFAPYEKALMAALRKFSGKLLSMVK 186 SVMLLLIKEASKLVELVRFLQKFIKGD++KFLRAVKF YEK L+ AL K SGKL+ +VK Sbjct: 126 SVMLLLIKEASKLVELVRFLQKFIKGDILKFLRAVKFTQYEKPLLQALGKISGKLVEIVK 185 Query: 187 SLRVHLESLSYFNVVKHRIAILAEWERKFYAVQQEALNKIPKALAELDARLAKVLAEAAP 246 SLRVHLESLSYF+ VK IA LA WERKFYAVQQ+A+ ++PKALAELDARL K+L+E AP Sbjct: 186 SLRVHLESLSYFDRVKATIARLAAWERKFYAVQQDAIRQVPKALAELDARLGKLLSETAP 245 Query: 247 QEAHTASAGVQASKAAPPKPPTQRVRDTPGQVLPK 281 +EAHT AGVQ +KAA PP QRV DTPG+VL K Sbjct: 246 KEAHTVPAGVQPNKAAAAAPPRQRVEDTPGKVLAK 280 >ref|XP_002539318.1| conserved hypothetical protein [Ricinus communis] gb|EEF23065.1| conserved hypothetical protein [Ricinus communis] Length = 273 Score = 279 bits (714), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 153/211 (72%), Positives = 179/211 (84%) Query: 30 FGEFADNRPLSAVVADMLVSFVPGVVIVTSARDAVAVILRMASHPEKREDIMEWVLLSAC 89 F + + P S DMLVSF+PGVVIVTSARDAVAVILR+A+HPE+RED+MEWVLLSAC Sbjct: 48 FHQLLNWAPGSKRREDMLVSFIPGVVIVTSARDAVAVILRLATHPERREDLMEWVLLSAC 107 Query: 90 LIVIALPLAMAAGGAAAAGVGAIVGGLAGSELGAALRSVMLLLIKEASKLVELVRFLQKF 149 LIVIALP+AMAAG A A GVGA+VGG+AGSELGAALR+VMLLLIKEASKL EL+ FLQKF Sbjct: 108 LIVIALPIAMAAGSAVALGVGAVVGGVAGSELGAALRAVMLLLIKEASKLSELLHFLQKF 167 Query: 150 IKGDVMKFLRAVKFAPYEKALMAALRKFSGKLLSMVKSLRVHLESLSYFNVVKHRIAILA 209 +KGD++KFLR V+FA YEKAL+ A+ K GKL+ +VK+LRVHLESL YF VK IA LA Sbjct: 168 MKGDILKFLRGVQFAKYEKALIQAISKIIGKLVEIVKALRVHLESLRYFEKVKSTIATLA 227 Query: 210 EWERKFYAVQQEALNKIPKALAELDARLAKV 240 EWE+KFY VQQ+AL ++PKALAELDARL + Sbjct: 228 EWEKKFYCVQQDALRQVPKALAELDARLQRC 258 >ref|NP_746174.1| hypothetical protein PP_4048 [Pseudomonas putida KT2440] gb|AAN69638.1|AE016597_9 hypothetical protein PP_4048 [Pseudomonas putida KT2440] Length = 507 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 122/276 (44%), Positives = 157/276 (56%), Gaps = 11/276 (3%) Query: 11 LDDAWSSVVGGMDWLKSVLFGEFADNRPLSAVVADMLVSFVPGVVIVTSARDAVAVILRM 70 LD A V G WL+ ++ GEFA+ RPLS V+ADML+S VPGVVIV SARD AV LR+ Sbjct: 48 LDQAVEKVADGFGWLRDLVLGEFAEERPLSVVIADMLLSLVPGVVIVLSARDLAAVCLRL 107 Query: 71 ASH---------PEKREDIMEWVLLSACLIVIALPLAMAAGGAAAAGVGAIVGGLAGSEL 121 P+ E EWVLL ACL+ + P+ A GA VG++ G L G E Sbjct: 108 GKRYAADGSQATPQPPE-WQEWVLLVACLMTLIAPIIGAVVGAVGTPVGSMAGALVGQEA 166 Query: 122 GAALRSVMLLLIKEASKLVE-LVRFLQKFIKGDVMKFLRAVKFAPYEKALMAALRKFSGK 180 A LR + LLLI+E+ +++ +V FL KF +G V +L V+FA YEK L+A L F K Sbjct: 167 AAFLRGLCLLLIRESQVILQTVVAFLGKFTRGSVEFWLHQVRFASYEKDLLAYLNLFLTK 226 Query: 181 LLSMVKSLRVHLESLSYFNVVKHRIAILAEWERKFYAVQQEALNKIPKALAELDARLAKV 240 +L+ LR +L + + H + L E +FYAVQ AL +IP AL +LDARLAKV Sbjct: 227 VLAATAKLRSYLGNWPFNQAASHLLVRLQAMEAQFYAVQVHALREIPHALMQLDARLAKV 286 Query: 241 LAEAAPQEAHTASAGVQASKAAPPKPPTQRVRDTPG 276 L +A+ A A AGV A K P RV G Sbjct: 287 LEQASDLPAQVAQAGVHAQKPEPMAMSAGRVTSGIG 322 >ref|YP_004702880.1| hypothetical protein PPS_3453 [Pseudomonas putida S16] gb|AEJ14000.1| conserved hypothetical protein [Pseudomonas putida S16] Length = 430 Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 101/231 (43%), Positives = 134/231 (58%), Gaps = 9/231 (3%) Query: 42 VVADMLVSFVPGVVIVTSARDAVAVILRMASHPEKREDI--------MEWVLLSACLIVI 93 V+ADML+S VPGVVIV SARD AV LR+ + EWVLL ACLI + Sbjct: 2 VIADMLLSLVPGVVIVLSARDLAAVCLRLGKRYTADDSQATAQPPQWQEWVLLIACLITL 61 Query: 94 ALPLAMAAGGAAAAGVGAIVGGLAGSELGAALRSVMLLLIKEASKLVE-LVRFLQKFIKG 152 P+ A GA VG++ G L G E A LR + LLLI+E+ ++ +V FL KF +G Sbjct: 62 IAPIIGAVVGAVGTPVGSVAGALVGQEAAAFLRGLCLLLIRESQIILRTVVAFLGKFTRG 121 Query: 153 DVMKFLRAVKFAPYEKALMAALRKFSGKLLSMVKSLRVHLESLSYFNVVKHRIAILAEWE 212 V +LR V+F YEK L+A L +F K+++ LR +L + + H + L E Sbjct: 122 SVEFWLRQVRFTSYEKDLLAYLNQFLTKVIAATAKLRSYLGNWPFNQAAAHLLVRLQAME 181 Query: 213 RKFYAVQQEALNKIPKALAELDARLAKVLAEAAPQEAHTASAGVQASKAAP 263 +FYAVQ A+ +IP+AL +LDARLAKVL +A+ A A AGV A K P Sbjct: 182 AQFYAVQVHAVREIPRALMQLDARLAKVLEQASDLPAQVAQAGVHAPKPVP 232 >ref|YP_001859819.1| hypothetical protein Bphy_3637 [Burkholderia phymatum STM815] gb|ACC72773.1| conserved hypothetical protein [Burkholderia phymatum STM815] Length = 515 Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 109/233 (46%), Gaps = 29/233 (12%) Query: 15 WSSVVGGMDWLKSVLFGEFADNRPLSAVVADMLVSFVPGVVIVTSARDAVAVILRMASHP 74 W++ DW+ L GEF + +V D +S P + T+ARD +A+++ MA + Sbjct: 24 WANAAAAADWVGGALKGEFGQQQTTGQIVFDATISMFPVLGEGTAARDTIAIMMHMADNR 83 Query: 75 EKREDIMEWVLLSACLIVIALPLAMAAGGAAAAGVGAIVGGLAGSELGAALRSVMLLLIK 134 + ED W+ L CLI + +P+ G GVG +V + A +S L + Sbjct: 84 QAVEDRWTWIKLVLCLIAV-VPIF----GGVLKGVGKLV-------IRAFEKSEDLAKLA 131 Query: 135 EASKLVELVRFLQKFIKGDVMKFLRAVKFAPYE----KALMAALRKFSGKLLSMVKSLRV 190 E ELV F+ + G+ ++LR + F Y+ L AL +FSG +V+++ Sbjct: 132 E-----ELVLFVNRMCHGNAYEWLRKLDFTTYQGKVIDGLTDALDRFSGACQYIVRNMGN 186 Query: 191 HLESLSYFNVVKHRIAILAEWERKFYAVQQEALNKIPKALAELDARLAKVLAE 243 L S H +A L+ K ++ A IP+AL +++ LA+V A Sbjct: 187 VLPS--------HVVAYLSGMPAKLQPIRNAANRMIPQALRDMNNCLARVRAH 231 >ref|YP_001859821.1| hypothetical protein Bphy_3639 [Burkholderia phymatum STM815] gb|ACC72775.1| conserved hypothetical protein [Burkholderia phymatum STM815] Length = 515 Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 109/233 (46%), Gaps = 29/233 (12%) Query: 15 WSSVVGGMDWLKSVLFGEFADNRPLSAVVADMLVSFVPGVVIVTSARDAVAVILRMASHP 74 W++ DW+ L GEF + +V D +S P + T+ARD +A+++ MA + Sbjct: 24 WANAAAAADWVGGALKGEFGQQQTTGQIVFDATISMFPVLGEGTAARDTIAIMMHMADNR 83 Query: 75 EKREDIMEWVLLSACLIVIALPLAMAAGGAAAAGVGAIVGGLAGSELGAALRSVMLLLIK 134 + ED W+ L CLI + +P+ G GVG +V + A +S L + Sbjct: 84 QAVEDRWTWIKLVLCLIAV-VPIF----GGVLKGVGKLV-------IRAFEKSEDLAKLA 131 Query: 135 EASKLVELVRFLQKFIKGDVMKFLRAVKFAPYE----KALMAALRKFSGKLLSMVKSLRV 190 E ELV F+ + G+ ++LR + F Y+ L AL +FSG +V+++ Sbjct: 132 E-----ELVLFVNRMCHGNAYEWLRKLDFTTYQGKVIDGLTDALDRFSGACQYIVRNMGN 186 Query: 191 HLESLSYFNVVKHRIAILAEWERKFYAVQQEALNKIPKALAELDARLAKVLAE 243 L S H +A L+ K ++ A IP+AL +++ LA+V A Sbjct: 187 VLPS--------HVVAYLSGMPAKLQPIRNAANRMIPQALRDMNNCLARVRAH 231 >ref|YP_434941.1| Rhs family protein [Hahella chejuensis KCTC 2396] gb|ABC30516.1| Rhs family protein [Hahella chejuensis KCTC 2396] Length = 1412 Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 88/186 (47%), Gaps = 28/186 (15%) Query: 369 RITQLSNEADAAAKAGDQALAAAKLEEARSILRPYLPKNPGDSWDEVVKRLDVSSPKDGA 428 R + + K +A AA KL +AR +D++ + LD+SSP +GA Sbjct: 1249 RWNEFQQRSKGQFKNSTEASAAWKLFQARD-------------FDKMAELLDLSSPNNGA 1295 Query: 429 VFWSGTSGQASKLGQVDAARAYAEKI-GGVTLETTPGGRIIDGWDDVNKAYPWNASGGQP 487 VFWSG +A + A E I G TLE TPGG I + W +++ + + G Sbjct: 1296 VFWSGNYPKAEEF-----ALNLRESIPGATTLEMTPGGNIFNNWKYLDEFFIYEDWGSGK 1350 Query: 488 GPYASGLWGSVSEKYANGASGVVNVVQTPEKLWDAGTVWHNSEKPLLMDLKKTTGQITDI 547 LW ++SE YA ASG VNVVQ E G +W E+P L ++T+I Sbjct: 1351 PTDGRRLWSAISEDYAERASGDVNVVQAYE-----GAIWKEYEEPAL----NKNPKVTNI 1401 Query: 548 KMHVVD 553 + H V+ Sbjct: 1402 QKHKVE 1407 >ref|ZP_03824682.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244] gb|EEH67408.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244] Length = 501 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/253 (25%), Positives = 115/253 (45%), Gaps = 43/253 (16%) Query: 18 VVGGMDWLKSVLFGEFADNRPLSAVVADMLVSFVPGVVIVTSARDAVAVILRMASHPEKR 77 VV G W+ L GEF D + + D +S P VT+ARD VA++++MA ++ Sbjct: 39 VVAGGKWIGGALQGEFNDKATVGQIFIDAAISMFPVAGEVTAARDLVAILMKMADDKKEA 98 Query: 78 EDIMEWVLLSACLIVIALPLAMAAGGAAAAGVGAIVGGLAGSELGAALRSVMLLLIKEAS 137 +++ WV + CL+ I +P+ G I+ G+ +++ ++K+A+ Sbjct: 99 SEVINWVKIILCLLPI-IPI-----------FGGILKGIG---------RLLITVMKDAT 137 Query: 138 KLVE----LVRFLQKFIKGDVMKFLRAVKFAPYEKALMAALRKFSGKLLSMVKSLRVHL- 192 K+ E ++ FL+K G+ ++F++ + FA Y+ +++ + ++ + + Sbjct: 138 KVAEVAAAILAFLRKMGYGNSVQFIQKLNFAQYQGKILSEFKNGLSRMKDGFAFISQKMG 197 Query: 193 ----ESLS-YFNVVKHRIAILAEWERKFYAVQQEALNKIPKALAELDARLAKVLAEAAPQ 247 ES+S Y N + ++ L K IP A+ ELD L KV E Q Sbjct: 198 GALPESVSVYVNSMGPKLDELGRLADKM----------IPSAIKELDQALNKVRTEIIRQ 247 Query: 248 --EAHTASAGVQA 258 EA G Q Sbjct: 248 MNEAGAKIGGTQT 260 >ref|ZP_02382590.1| hypothetical protein BuboB_33000 [Burkholderia ubonensis Bu] Length = 528 Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 108/234 (46%), Gaps = 24/234 (10%) Query: 24 WLKSVLFGEFADNRPLSAVVADMLVSFVPGVVIVTSARDAVAVILRMASHPEKREDIMEW 83 W L G F + + +S ++ D ++ +P V T+ RD +AV + M+ P KR D M+ Sbjct: 20 WCWGTLEGAFNEKQTISQIIVDAVIGMIPLVGDATAVRDLLAVSIGMSQDPVKRNDTMQR 79 Query: 84 VLLSACLIVIALPLAMAAGGAAAAGVGAIVGGLAGSELGAALRSVMLLLIKEASKLVELV 143 VLL LI +P+ + + G +A K+A L +V Sbjct: 80 VLL-VVLIFALIPVVGGVIKGVGRLLLKVTGDVA----------------KDAELLKAVV 122 Query: 144 RFLQKFIKGDVMKFLRAVKFAPYEKALMAALRKFSGKL-LSMVKSLRVHLESLSYFNVVK 202 +FL + GD K+L+A+ A Y+ ++ L+ F + +++ +SL + + + Sbjct: 123 QFLNRLGHGDAPKWLKALDLAKYQAQAISRLKDFCATVRVAIQRSLEARVGRM----LPD 178 Query: 203 HRIAILAEWERKFYAVQQEALNKIPKALAELDARLAKVLAEAAPQ-EAHTASAG 255 A L F+A+Q A +P+A+ EL+A+L KVL + E H + G Sbjct: 179 KWRAALERVSSGFHAIQDMADKIVPEAIKELNAKL-KVLQNMVYRGEVHEIATG 231