BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0004.p (261 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774403.1| AraC family transcription regulator protein ... 522 e-146 ref|YP_001632037.1| AraC family transcriptional regulator [Borde... 271 6e-71 gb|EFV85122.1| AraC family Transcriptional regulator [Achromobac... 267 1e-69 gb|EGP44537.1| AraC family regulatory helix-turn-helix protein 1... 261 6e-68 ref|YP_003978365.1| AraC family transcriptional regulator [Achro... 254 6e-66 ref|YP_347991.1| AraC family transcriptional regulator [Pseudomo... 254 6e-66 ref|ZP_06687137.1| AraC family transcriptional regulator [Achrom... 252 5e-65 ref|YP_351441.1| AraC family transcriptional regulator [Pseudomo... 234 8e-60 ref|YP_002287970.1| transcriptional regulator, AraC-family [Olig... 210 1e-52 ref|YP_004633918.1| AraC family transcriptional regulator [Oligo... 210 2e-52 >ref|YP_003774403.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62495.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 274 Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust. Identities = 260/261 (99%), Positives = 260/261 (99%) Query: 1 VDTFQHLPSSVVAFARELSARDLLTAHSHRRGQLLYAVEGVMQVRTPQGVWLVPPHRALW 60 VDTFQHLPSSVVAFARELSARDLLTAHSHRRGQLLYAVEGVMQVRTPQGVWLVPPHRALW Sbjct: 14 VDTFQHLPSSVVAFARELSARDLLTAHSHRRGQLLYAVEGVMQVRTPQGVWLVPPHRALW 73 Query: 61 VPPQVEHEILMLSKVSMRTLYINQAQGRELGEQCRLLEVSVLLRELILALLAEPRDYAPQ 120 VPPQVEHEILMLSKVSMRTLYINQAQGRELGEQCRLLEVSVLLRELILALLAEPRDYAPQ Sbjct: 74 VPPQVEHEILMLSKVSMRTLYINQAQGRELGEQCRLLEVSVLLRELILALLAEPRDYAPQ 133 Query: 121 SRAGHVAELILSELARAPAIPVAIPWPGDRRLQAICEAILADPGRQFSLVDWAGMGGASV 180 SRAGHVAELILSELARAPAIPVAIPWPGDRRLQAICEAILADPGRQFSL DWAGMGGASV Sbjct: 134 SRAGHVAELILSELARAPAIPVAIPWPGDRRLQAICEAILADPGRQFSLADWAGMGGASV 193 Query: 181 RTVIRLFPKETGLQFRHWVQQVHLSEALVRLSRGDPVGVVAQALGYRSQSAFSNMFRKAL 240 RTVIRLFPKETGLQFRHWVQQVHLSEALVRLSRGDPVGVVAQALGYRSQSAFSNMFRKAL Sbjct: 194 RTVIRLFPKETGLQFRHWVQQVHLSEALVRLSRGDPVGVVAQALGYRSQSAFSNMFRKAL 253 Query: 241 RTTPNHYLQRQERRRLSLPAS 261 RTTPNHYLQRQERRRLSLPAS Sbjct: 254 RTTPNHYLQRQERRRLSLPAS 274 >ref|YP_001632037.1| AraC family transcriptional regulator [Bordetella petrii DSM 12804] emb|CAP43769.1| transcriptional regulator, AraC family [Bordetella petrii] Length = 284 Score = 271 bits (693), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 138/248 (55%), Positives = 170/248 (68%) Query: 2 DTFQHLPSSVVAFARELSARDLLTAHSHRRGQLLYAVEGVMQVRTPQGVWLVPPHRALWV 61 + +QH+P V A A++ + HSH RGQL+YA+EGVM+V TP G W +P RALWV Sbjct: 34 EDYQHVPRLVTALAKDFVPSETTGPHSHPRGQLVYAIEGVMRVSTPDGFWTLPSLRALWV 93 Query: 62 PPQVEHEILMLSKVSMRTLYINQAQGRELGEQCRLLEVSVLLRELILALLAEPRDYAPQS 121 PP H I M+ KVSMRTLY++ L ++C+++EVS LLRELILAL AEP +YA + Sbjct: 94 PPGTVHGIQMVGKVSMRTLYVHANAANSLWDRCQVVEVSGLLRELILALTAEPIEYALEG 153 Query: 122 RAGHVAELILSELARAPAIPVAIPWPGDRRLQAICEAILADPGRQFSLVDWAGMGGASVR 181 R G +A L+L+EL AP IP+ IPWP DRRLQ +C AILA PG ++ DW GAS R Sbjct: 154 RGGQIATLLLTELKAAPVIPIRIPWPQDRRLQTVCRAILAQPGLARTVDDWGDEVGASGR 213 Query: 182 TVIRLFPKETGLQFRHWVQQVHLSEALVRLSRGDPVGVVAQALGYRSQSAFSNMFRKALR 241 T+IRLF E GL +R WVQQV L+EAL RLS G PV VA LGYRS SAFS MFR+AL Sbjct: 214 TLIRLFQAEVGLNYRQWVQQVRLAEALHRLSLGQPVARVAAELGYRSPSAFSAMFRRALG 273 Query: 242 TTPNHYLQ 249 + P YL Sbjct: 274 SPPQAYLH 281 >gb|EFV85122.1| AraC family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 268 Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 142/248 (57%), Positives = 164/248 (66%) Query: 4 FQHLPSSVVAFARELSARDLLTAHSHRRGQLLYAVEGVMQVRTPQGVWLVPPHRALWVPP 63 +QH P V A A+E A AHSH R QL+YA+EGVM+V TP G W +PP RALWVP Sbjct: 19 YQHRPRGVTAMAKEFPAGARTGAHSHPRAQLIYAIEGVMRVTTPSGFWALPPLRALWVPA 78 Query: 64 QVEHEILMLSKVSMRTLYINQAQGRELGEQCRLLEVSVLLRELILALLAEPRDYAPQSRA 123 V H + M+ VSMR+LYI R QC+++EVS LLRELILAL AEP DY RA Sbjct: 79 GVSHGVDMVGAVSMRSLYIQADAARAYWPQCQVIEVSGLLRELILALTAEPIDYPLGGRA 138 Query: 124 GHVAELILSELARAPAIPVAIPWPGDRRLQAICEAILADPGRQFSLVDWAGMGGASVRTV 183 VA LILSELA A +P+ IPWP DRRLQ ICEAIL PG Q + DW GAS RT+ Sbjct: 139 EQVAALILSELAAARVVPIQIPWPRDRRLQIICEAILDRPGLQRGIEDWGSEVGASARTL 198 Query: 184 IRLFPKETGLQFRHWVQQVHLSEALVRLSRGDPVGVVAQALGYRSQSAFSNMFRKALRTT 243 IRLF E GL +R WVQQV L++A+ RLS G PV +A LGYRS SAFS MF +AL Sbjct: 199 IRLFQAELGLNYRQWVQQVRLADAVCRLSLGVPVARIAADLGYRSASAFSAMFHRALGAP 258 Query: 244 PNHYLQRQ 251 P YL RQ Sbjct: 259 PQRYLHRQ 266 >gb|EGP44537.1| AraC family regulatory helix-turn-helix protein 11 [Achromobacter xylosoxidans AXX-A] Length = 268 Score = 261 bits (668), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 140/248 (56%), Positives = 165/248 (66%) Query: 4 FQHLPSSVVAFARELSARDLLTAHSHRRGQLLYAVEGVMQVRTPQGVWLVPPHRALWVPP 63 +Q P V A A+E +A AHSH R QL+YAVEGVM V TP G W +PP RALWVP Sbjct: 19 YQDRPRGVTAMAKEFTAGARTGAHSHPRAQLIYAVEGVMHVTTPSGFWALPPLRALWVPA 78 Query: 64 QVEHEILMLSKVSMRTLYINQAQGRELGEQCRLLEVSVLLRELILALLAEPRDYAPQSRA 123 V H + M+ VSMR+LYI+ + QC+++EVS LLRELILAL AEP DY RA Sbjct: 79 GVPHGVDMIGAVSMRSLYIHPDAAQAYWPQCQVIEVSGLLRELILALTAEPIDYPLGGRA 138 Query: 124 GHVAELILSELARAPAIPVAIPWPGDRRLQAICEAILADPGRQFSLVDWAGMGGASVRTV 183 VA LILSELA A +P+ IPWP DRRLQ ICEAIL PG Q + DWA GAS RT+ Sbjct: 139 EQVAALILSELAAARVVPIQIPWPRDRRLQTICEAILDRPGLQRGIEDWASEVGASARTL 198 Query: 184 IRLFPKETGLQFRHWVQQVHLSEALVRLSRGDPVGVVAQALGYRSQSAFSNMFRKALRTT 243 IRLF E GL +R WVQQV L++A+ RLS G PV +A LGYRS SAFS MF +AL Sbjct: 199 IRLFQAELGLNYRQWVQQVRLADAVCRLSLGVPVARIAADLGYRSPSAFSAMFHRALGAP 258 Query: 244 PNHYLQRQ 251 P YL+ + Sbjct: 259 PQRYLRAE 266 >ref|YP_003978365.1| AraC family transcriptional regulator [Achromobacter xylosoxidans A8] gb|ADP15650.1| bacterial regulatory helix-turn-helix protein, AraC family protein 11 [Achromobacter xylosoxidans A8] Length = 266 Score = 254 bits (650), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 135/247 (54%), Positives = 161/247 (65%) Query: 4 FQHLPSSVVAFARELSARDLLTAHSHRRGQLLYAVEGVMQVRTPQGVWLVPPHRALWVPP 63 +QH P +V A A+E HSH R QL+YAVEGVM+V TP G W +PP RALWVP Sbjct: 19 YQHRPRAVTAMAKEFPPGTRTGTHSHPRAQLVYAVEGVMRVTTPSGFWALPPLRALWVPA 78 Query: 64 QVEHEILMLSKVSMRTLYINQAQGRELGEQCRLLEVSVLLRELILALLAEPRDYAPQSRA 123 V H + M+ VSMR+LY+ QC+++EVS LLRELILAL AEP +Y RA Sbjct: 79 GVPHGVDMVGAVSMRSLYLEAETACGYWPQCQVVEVSGLLRELILALTAEPIEYPLGGRA 138 Query: 124 GHVAELILSELARAPAIPVAIPWPGDRRLQAICEAILADPGRQFSLVDWAGMGGASVRTV 183 +A L+LSELA A P+ IPWP DRRLQ IC AIL DPG Q + DW GAS RT+ Sbjct: 139 EQIAALVLSELAAARVAPLQIPWPRDRRLQTICAAILDDPGLQRGIEDWGDEVGASARTL 198 Query: 184 IRLFPKETGLQFRHWVQQVHLSEALVRLSRGDPVGVVAQALGYRSQSAFSNMFRKALRTT 243 IRLF E GL +R WVQQV L+EA+ RLS+G PV +A LGYRS SAFS MF +AL Sbjct: 199 IRLFQAELGLNYRQWVQQVRLAEAVCRLSQGVPVARIASDLGYRSASAFSAMFHRALGAP 258 Query: 244 PNHYLQR 250 P YL+ Sbjct: 259 PQGYLKN 265 >ref|YP_347991.1| AraC family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gb|ABA74002.1| putative AraC-family transcriptional regulator [Pseudomonas fluorescens Pf0-1] Length = 271 Score = 254 bits (650), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 126/248 (50%), Positives = 166/248 (66%) Query: 4 FQHLPSSVVAFARELSARDLLTAHSHRRGQLLYAVEGVMQVRTPQGVWLVPPHRALWVPP 63 +Q +P + R+ + + H HR GQLLYA GVM+V T +G+W++PP RALW+PP Sbjct: 24 YQDVPRVMTVLVRDQATGEYNEPHVHRHGQLLYASNGVMRVATERGLWILPPKRALWIPP 83 Query: 64 QVEHEILMLSKVSMRTLYINQAQGRELGEQCRLLEVSVLLRELILALLAEPRDYAPQSRA 123 V H+ LMLS V MR++YI LG+ C++LE+ LLRELILAL +P +Y + R Sbjct: 84 GVIHDQLMLSAVKMRSIYIEPQVCAGLGDHCKVLEIPGLLRELILALAEQPIEYPQEGRN 143 Query: 124 GHVAELILSELARAPAIPVAIPWPGDRRLQAICEAILADPGRQFSLVDWAGMGGASVRTV 183 H+ LILSEL A +P+ +PWP DRRL +CEAIL DPG+ S+ WA GAS RT+ Sbjct: 144 AHIVALILSELQAARTLPIEVPWPVDRRLVTVCEAILQDPGQDHSIGYWADRVGASSRTL 203 Query: 184 IRLFPKETGLQFRHWVQQVHLSEALVRLSRGDPVGVVAQALGYRSQSAFSNMFRKALRTT 243 IRLF ETGL FRHW+QQV L+ A+ RL +G VGV+A+ LGY SQSAFS MFR+ + + Sbjct: 204 IRLFVNETGLNFRHWLQQVRLATAIDRLDQGQSVGVIARDLGYASQSAFSAMFRRVMGES 263 Query: 244 PNHYLQRQ 251 P +L R Sbjct: 264 PREFLVRD 271 >ref|ZP_06687137.1| AraC family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gb|EFF75987.1| AraC family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 272 Score = 252 bits (643), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 136/250 (54%), Positives = 158/250 (63%) Query: 4 FQHLPSSVVAFARELSARDLLTAHSHRRGQLLYAVEGVMQVRTPQGVWLVPPHRALWVPP 63 +Q P V A A+E A AHSH R QL+YA EGVM+V TP G W +PP RALWVP Sbjct: 19 YQDRPRVVTALAKEFRAGAQTGAHSHPRAQLIYAAEGVMRVTTPSGFWALPPLRALWVPA 78 Query: 64 QVEHEILMLSKVSMRTLYINQAQGRELGEQCRLLEVSVLLRELILALLAEPRDYAPQSRA 123 V H + M+ VSMR+LYI QC+++EVS LLRELILAL AEP DY RA Sbjct: 79 GVPHGVDMVGAVSMRSLYIQADAAARYWPQCQVVEVSGLLRELILALTAEPIDYPLGGRA 138 Query: 124 GHVAELILSELARAPAIPVAIPWPGDRRLQAICEAILADPGRQFSLVDWAGMGGASVRTV 183 +A LILSELA A +P+ IPWP DRRLQ IC AIL PG Q + W GAS RT+ Sbjct: 139 DQIAALILSELAAARVLPIQIPWPRDRRLQTICAAILDQPGMQRGIEAWGSEVGASARTL 198 Query: 184 IRLFPKETGLQFRHWVQQVHLSEALVRLSRGDPVGVVAQALGYRSQSAFSNMFRKALRTT 243 IRLF E GL +R WVQQV L++A+ RLS G PV +A LGYRS SAFS MF +AL Sbjct: 199 IRLFQAELGLNYRQWVQQVRLADAVCRLSVGVPVARIASDLGYRSASAFSAMFHRALGVP 258 Query: 244 PNHYLQRQER 253 P Y Q R Sbjct: 259 PQRYQQDAAR 268 >ref|YP_351441.1| AraC family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gb|ABA77450.1| putative AraC-family transcriptional regulator [Pseudomonas fluorescens Pf0-1] Length = 285 Score = 234 bits (598), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 128/247 (51%), Positives = 164/247 (66%) Query: 4 FQHLPSSVVAFARELSARDLLTAHSHRRGQLLYAVEGVMQVRTPQGVWLVPPHRALWVPP 63 +Q +P V A R+ +A H+HR GQLLYAV GVM+ +W +PP RALW+P Sbjct: 38 YQDVPRVVTALVRDQAAGAYNPPHTHRHGQLLYAVSGVMRAVAQGSLWFLPPKRALWIPA 97 Query: 64 QVEHEILMLSKVSMRTLYINQAQGRELGEQCRLLEVSVLLRELILALLAEPRDYAPQSRA 123 + EH+ LML+ V MR++YI G++CR+++VS+LLRELIL L EP +YA + R Sbjct: 98 EEEHDQLMLTPVQMRSIYIQADAAACFGDRCRIVDVSLLLRELILVLADEPIEYALEGRN 157 Query: 124 GHVAELILSELARAPAIPVAIPWPGDRRLQAICEAILADPGRQFSLVDWAGMGGASVRTV 183 HV LILSELA A +P+ IPWP DRRLQ +C AIL PG+ + WA GAS RT+ Sbjct: 158 THVVALILSELAAARTLPLQIPWPVDRRLQVVCNAILDAPGQSHRIEYWADKVGASSRTL 217 Query: 184 IRLFPKETGLQFRHWVQQVHLSEALVRLSRGDPVGVVAQALGYRSQSAFSNMFRKALRTT 243 IRLF KETGL +R WVQQV L+ AL RL G+P+G +AQ LGY SAFS MFR+A T+ Sbjct: 218 IRLFLKETGLTYRQWVQQVRLACALERLENGEPIGRIAQELGYVGASAFSAMFRRATGTS 277 Query: 244 PNHYLQR 250 P +L R Sbjct: 278 PREFLVR 284 >ref|YP_002287970.1| transcriptional regulator, AraC-family [Oligotropha carboxidovorans OM5] gb|ACI92105.1| transcriptional regulator, AraC-family [Oligotropha carboxidovorans OM5] Length = 300 Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 107/255 (41%), Positives = 150/255 (58%) Query: 2 DTFQHLPSSVVAFARELSARDLLTAHSHRRGQLLYAVEGVMQVRTPQGVWLVPPHRALWV 61 + +QH V A AR+L + ++ HSH R QL++ GV+ V T G W+VP RA+WV Sbjct: 43 EDYQHTSRVVAAMARDLPDKFVIPMHSHFRSQLIFGCSGVITVTTVNGTWVVPSLRAVWV 102 Query: 62 PPQVEHEILMLSKVSMRTLYINQAQGRELGEQCRLLEVSVLLRELILALLAEPRDYAPQS 121 P VEHE+ V MRT+Y++ L +C ++ VS LLRELI+A + P D++ S Sbjct: 103 PGGVEHEMRTTGSVEMRTIYVDPEAASHLPRECCVVAVSPLLRELIVAAVRIPNDFSDGS 162 Query: 122 RAGHVAELILSELARAPAIPVAIPWPGDRRLQAICEAILADPGRQFSLVDWAGMGGASVR 181 R + LIL+E+ P +P+ +P P DRRL +C+AIL DPG +L ++ GAS R Sbjct: 163 REEKIMSLILTEIHPDPVLPLDLPMPQDRRLLRVCQAILTDPGSNSTLAEFGQTVGASQR 222 Query: 182 TVIRLFPKETGLQFRHWVQQVHLSEALVRLSRGDPVGVVAQALGYRSQSAFSNMFRKALR 241 T+ R+FP ETG F W QQ L + L+ G P+ +A LGY S SAFS MFR+AL Sbjct: 223 TLERMFPVETGTTFSKWRQQARLQCGIRMLAEGTPISTIALDLGYESPSAFSLMFRRALG 282 Query: 242 TTPNHYLQRQERRRL 256 P+ Y + R+L Sbjct: 283 VAPSEYFETIHARKL 297 >ref|YP_004633918.1| AraC family transcriptional regulator [Oligotropha carboxidovorans OM5] gb|AEI04047.1| transcriptional regulator, AraC family [Oligotropha carboxidovorans OM4] gb|AEI07677.1| transcriptional regulator, AraC family [Oligotropha carboxidovorans OM5] Length = 266 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 107/255 (41%), Positives = 150/255 (58%) Query: 2 DTFQHLPSSVVAFARELSARDLLTAHSHRRGQLLYAVEGVMQVRTPQGVWLVPPHRALWV 61 + +QH V A AR+L + ++ HSH R QL++ GV+ V T G W+VP RA+WV Sbjct: 9 EDYQHTSRVVAAMARDLPDKFVIPMHSHFRSQLIFGCSGVITVTTVNGTWVVPSLRAVWV 68 Query: 62 PPQVEHEILMLSKVSMRTLYINQAQGRELGEQCRLLEVSVLLRELILALLAEPRDYAPQS 121 P VEHE+ V MRT+Y++ L +C ++ VS LLRELI+A + P D++ S Sbjct: 69 PGGVEHEMRTTGSVEMRTIYVDPEAASHLPRECCVVAVSPLLRELIVAAVRIPNDFSDGS 128 Query: 122 RAGHVAELILSELARAPAIPVAIPWPGDRRLQAICEAILADPGRQFSLVDWAGMGGASVR 181 R + LIL+E+ P +P+ +P P DRRL +C+AIL DPG +L ++ GAS R Sbjct: 129 REEKIMSLILTEIHPDPVLPLDLPMPQDRRLLRVCQAILTDPGSNSTLAEFGQTVGASQR 188 Query: 182 TVIRLFPKETGLQFRHWVQQVHLSEALVRLSRGDPVGVVAQALGYRSQSAFSNMFRKALR 241 T+ R+FP ETG F W QQ L + L+ G P+ +A LGY S SAFS MFR+AL Sbjct: 189 TLERMFPVETGTTFSKWRQQARLQCGIRMLAEGTPISTIALDLGYESPSAFSLMFRRALG 248 Query: 242 TTPNHYLQRQERRRL 256 P+ Y + R+L Sbjct: 249 VAPSEYFETIHARKL 263