BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0089.p (192 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776883.1| transcription regulator protein [Herbaspiril... 374 e-102 ref|ZP_02886067.1| transcriptional regulator, TetR family [Burkh... 277 7e-73 ref|YP_001682160.1| TetR family transcriptional regulator [Caulo... 215 3e-54 ref|YP_366164.1| TetR family transcriptional regulator [Xanthomo... 209 1e-52 ref|ZP_08186868.1| transcriptional regulator, tetR family [Xanth... 207 5e-52 ref|ZP_06638685.1| TetR family transcriptional regulator [Serrat... 206 2e-51 ref|ZP_06703549.1| transcriptional regulator, TetR family [Xanth... 200 7e-50 ref|YP_004853738.1| AcrR family transcriptional regulator [Xanth... 192 2e-47 ref|ZP_06909865.1| TetR-family transcriptional regulator [Strept... 127 8e-28 ref|YP_003341907.1| TetR family transcriptional regulator [Strep... 127 9e-28 >ref|YP_003776883.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64975.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 190 Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust. Identities = 189/190 (99%), Positives = 189/190 (99%) Query: 3 MTNKLPLTEEPTLRADAARNRERILAAAEEVFLERGADASLDDIAKRAKVGIGTLYRRFP 62 MTNKLPLTEEPTLRADAARNRERILAAAEEVFLERGADASLDDIAKRAKVGIGTLYRRFP Sbjct: 1 MTNKLPLTEEPTLRADAARNRERILAAAEEVFLERGADASLDDIAKRAKVGIGTLYRRFP 60 Query: 63 TREALLAATNDERLMALTEASRRRDDKLDPDTSVRAFIKDLVAHACHYRGLAAALGTVLK 122 TREALLAATNDERLMALTEASRRRDDKLDPD SVRAFIKDLVAHACHYRGLAAALGTVLK Sbjct: 61 TREALLAATNDERLMALTEASRRRDDKLDPDASVRAFIKDLVAHACHYRGLAAALGTVLK 120 Query: 123 SGTPGCRASGEEARRLLLRAQKAGAIRKDVSVDDLVCMVTAISLSIEQGSTTKSRIAHLT 182 SGTPGCRASGEEARRLLLRAQKAGAIRKDVSVDDLVCMVTAISLSIEQGSTTKSRIAHLT Sbjct: 121 SGTPGCRASGEEARRLLLRAQKAGAIRKDVSVDDLVCMVTAISLSIEQGSTTKSRIAHLT 180 Query: 183 DLFLDGVGVR 192 DLFLDGVGVR Sbjct: 181 DLFLDGVGVR 190 >ref|ZP_02886067.1| transcriptional regulator, TetR family [Burkholderia graminis C4D1M] gb|EDT08455.1| transcriptional regulator, TetR family [Burkholderia graminis C4D1M] Length = 190 Score = 277 bits (708), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 136/188 (72%), Positives = 159/188 (84%) Query: 3 MTNKLPLTEEPTLRADAARNRERILAAAEEVFLERGADASLDDIAKRAKVGIGTLYRRFP 62 M K T+E LRADAARNRERIL AAE +FLERGA+ SLDDIA+RA VGIGTLYRRFP Sbjct: 1 MNRKCSTTDEAPLRADAARNRERILEAAEALFLERGAEVSLDDIARRANVGIGTLYRRFP 60 Query: 63 TREALLAATNDERLMALTEASRRRDDKLDPDTSVRAFIKDLVAHACHYRGLAAALGTVLK 122 TR+ALLAA +DERL++L +ASR RDDKL+P S+RAF+K+LV HA HYRGLAA LGTVL+ Sbjct: 61 TRDALLAAASDERLLSLAKASRARDDKLEPIASLRAFVKELVNHANHYRGLAALLGTVLQ 120 Query: 123 SGTPGCRASGEEARRLLLRAQKAGAIRKDVSVDDLVCMVTAISLSIEQGSTTKSRIAHLT 182 GTPGCRA EE RRLL RAQKAGA+RKDVS+ DLVC+VTAI+L++EQG TT+SR+ HL Sbjct: 121 EGTPGCRAGSEEGRRLLERAQKAGAVRKDVSIGDLVCVVTAIALAVEQGGTTRSRVTHLI 180 Query: 183 DLFLDGVG 190 DLF DG+G Sbjct: 181 DLFFDGIG 188 >ref|YP_001682160.1| TetR family transcriptional regulator [Caulobacter sp. K31] gb|ABZ69662.1| transcriptional regulator, TetR family [Caulobacter sp. K31] Length = 192 Score = 215 bits (547), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 110/182 (60%), Positives = 137/182 (75%) Query: 8 PLTEEPTLRADAARNRERILAAAEEVFLERGADASLDDIAKRAKVGIGTLYRRFPTREAL 67 P EP+LRADA RNRER+L AAEE+FLE+GA S DD+AKRAKVGIGTLYRRFPTR+AL Sbjct: 3 PTPREPSLRADAQRNRERLLVAAEELFLEQGATVSFDDVAKRAKVGIGTLYRRFPTRDAL 62 Query: 68 LAATNDERLMALTEASRRRDDKLDPDTSVRAFIKDLVAHACHYRGLAAALGTVLKSGTPG 127 LAA DERL+A+ +ASR R+ DP +++R F ++LV YRGLAA LG VL T G Sbjct: 63 LAAMCDERLLAIAQASRAREGVCDPVSALRLFTEELVTATNMYRGLAALLGVVLNHPTRG 122 Query: 128 CRASGEEARRLLLRAQKAGAIRKDVSVDDLVCMVTAISLSIEQGSTTKSRIAHLTDLFLD 187 C A+ E RRLL +AQ AG +R+D+S+DDLVC++TA+SL+ + SRIAHL LFL+ Sbjct: 123 CAATTEAGRRLLHQAQAAGLVRRDLSMDDLVCVITAVSLATGETRDASSRIAHLVGLFLN 182 Query: 188 GV 189 GV Sbjct: 183 GV 184 >ref|YP_366164.1| TetR family transcriptional regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] emb|CAJ26164.1| putative transcriptional regulator, TetR family [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 210 Score = 209 bits (533), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 107/184 (58%), Positives = 132/184 (71%) Query: 6 KLPLTEEPTLRADAARNRERILAAAEEVFLERGADASLDDIAKRAKVGIGTLYRRFPTRE 65 K PLT + LRADA RNRER+LAAAEEVFLERGA+AS++D+AKRA VGIGTLYRRFPTRE Sbjct: 18 KSPLTAKTPLRADAQRNRERLLAAAEEVFLERGAEASMEDVAKRAGVGIGTLYRRFPTRE 77 Query: 66 ALLAATNDERLMALTEASRRRDDKLDPDTSVRAFIKDLVAHACHYRGLAAALGTVLKSGT 125 +L AA R ++L AS R LD ++RA+++DL H YRGLAA+LG VL+SGT Sbjct: 78 SLFAAAYSGRFLSLANASHARASSLDALAALRAYLEDLALHTSVYRGLAASLGAVLQSGT 137 Query: 126 PGCRASGEEARRLLLRAQKAGAIRKDVSVDDLVCMVTAISLSIEQGSTTKSRIAHLTDLF 185 PGC A +E ++ L AQ +G +R DV DDLV + A SL+ EQ K RIAHL LF Sbjct: 138 PGCEAVSKEGQQRLRSAQNSGVVRCDVCFDDLVVVAIATSLATEQHGAPKRRIAHLIGLF 197 Query: 186 LDGV 189 +DG+ Sbjct: 198 VDGI 201 >ref|ZP_08186868.1| transcriptional regulator, tetR family [Xanthomonas perforans 91-118] gb|EGD15497.1| transcriptional regulator, tetR family [Xanthomonas perforans 91-118] Length = 190 Score = 207 bits (528), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 105/181 (58%), Positives = 132/181 (72%) Query: 9 LTEEPTLRADAARNRERILAAAEEVFLERGADASLDDIAKRAKVGIGTLYRRFPTREALL 68 +T + LRADA RNRER+LAAAEEVFLERGA+AS++D+AKRA VGIGTLYRRFPTRE+L Sbjct: 1 MTADTPLRADAQRNRERLLAAAEEVFLERGAEASMEDVAKRAGVGIGTLYRRFPTRESLF 60 Query: 69 AATNDERLMALTEASRRRDDKLDPDTSVRAFIKDLVAHACHYRGLAAALGTVLKSGTPGC 128 AA R ++L AS R LD T++RA+++DL H YRGLAA+LG VL+SGTPGC Sbjct: 61 AAAYSGRFLSLANASHARASSLDALTALRAYLEDLALHTSVYRGLAASLGAVLQSGTPGC 120 Query: 129 RASGEEARRLLLRAQKAGAIRKDVSVDDLVCMVTAISLSIEQGSTTKSRIAHLTDLFLDG 188 A +E ++ L AQ +G +R DV DDLV + A SL+ EQ K+RIAHL LF+DG Sbjct: 121 EAVSKEGQQRLRSAQNSGVVRCDVCFDDLVVVAIATSLATEQHGAPKTRIAHLIGLFVDG 180 Query: 189 V 189 + Sbjct: 181 I 181 >ref|ZP_06638685.1| TetR family transcriptional regulator [Serratia odorifera DSM 4582] gb|EFE96592.1| TetR family transcriptional regulator [Serratia odorifera DSM 4582] Length = 178 Score = 206 bits (524), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 106/178 (59%), Positives = 137/178 (76%) Query: 15 LRADAARNRERILAAAEEVFLERGADASLDDIAKRAKVGIGTLYRRFPTREALLAATNDE 74 +R DA +NRERILAAA+ +FLERGA ASL+++A+RA VGIGTLYRRF TRE LLAAT + Sbjct: 1 MRVDAQQNRERILAAADALFLERGAGASLEEVARRAGVGIGTLYRRFATREELLAATYNA 60 Query: 75 RLMALTEASRRRDDKLDPDTSVRAFIKDLVAHACHYRGLAAALGTVLKSGTPGCRASGEE 134 RL+ L EASR RD + DP +++RA+++ LV + YRGLA +L TVL+SGTPGC A+ EE Sbjct: 61 RLLTLAEASRARDAEHDPVSALRAYLEGLVINTTRYRGLALSLDTVLQSGTPGCDATTEE 120 Query: 135 ARRLLLRAQKAGAIRKDVSVDDLVCMVTAISLSIEQGSTTKSRIAHLTDLFLDGVGVR 192 +RLL Q+AG IR DV+ DDLV +VTA SL+ EQ +R++HL DLFL+G+ VR Sbjct: 121 GQRLLHCGQQAGIIRPDVTFDDLVFVVTASSLAAEQDEALAARVSHLVDLFLNGISVR 178 >ref|ZP_06703549.1| transcriptional regulator, TetR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] ref|ZP_06730733.1| transcriptional regulator, TetR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gb|EFF44893.1| transcriptional regulator, TetR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gb|EFF48147.1| transcriptional regulator, TetR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 210 Score = 200 bits (509), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 106/184 (57%), Positives = 135/184 (73%) Query: 8 PLTEEPTLRADAARNRERILAAAEEVFLERGADASLDDIAKRAKVGIGTLYRRFPTREAL 67 PLT + LRADA RNRER+LAAAE VFLERGA+AS++D+AKRA VGIGTLYRRFPTRE+L Sbjct: 20 PLTADTPLRADAQRNRERLLAAAEAVFLERGAEASMEDVAKRAGVGIGTLYRRFPTRESL 79 Query: 68 LAATNDERLMALTEASRRRDDKLDPDTSVRAFIKDLVAHACHYRGLAAALGTVLKSGTPG 127 AA R ++L +S R LD ++RA+++DL H YRGLAA+LG VL+SGTPG Sbjct: 80 FAAAYSGRFLSLAASSHARASSLDALAALRAYLEDLALHTSVYRGLAASLGAVLQSGTPG 139 Query: 128 CRASGEEARRLLLRAQKAGAIRKDVSVDDLVCMVTAISLSIEQGSTTKSRIAHLTDLFLD 187 C A +E ++ L AQK G +R+DVS DDLV + A SL+ EQ + ++RIAHL LF+D Sbjct: 140 CEAVSKEGQQRLRSAQKTGLVRRDVSFDDLVVVAIATSLATEQLGSPRTRIAHLIGLFVD 199 Query: 188 GVGV 191 G+ V Sbjct: 200 GIAV 203 >ref|YP_004853738.1| AcrR family transcriptional regulator [Xanthomonas axonopodis pv. citrumelo F1] gb|AEO44440.1| AcrR family transcriptional regulator [Xanthomonas axonopodis pv. citrumelo F1] Length = 184 Score = 192 bits (488), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 101/175 (57%), Positives = 129/175 (73%) Query: 15 LRADAARNRERILAAAEEVFLERGADASLDDIAKRAKVGIGTLYRRFPTREALLAATNDE 74 +RADA RNRER+LAAAEEVFLERGA+AS++D+AKRA VGIGTLYRRFPTRE+L AA Sbjct: 1 MRADAQRNRERLLAAAEEVFLERGAEASMEDVAKRAGVGIGTLYRRFPTRESLFAAAYSG 60 Query: 75 RLMALTEASRRRDDKLDPDTSVRAFIKDLVAHACHYRGLAAALGTVLKSGTPGCRASGEE 134 R ++L +S R LD ++RA+++DL H YRGLAA+LG VL+SGTPGC A +E Sbjct: 61 RFLSLAASSHARASSLDALAALRAYLEDLALHTSVYRGLAASLGAVLQSGTPGCEAVSKE 120 Query: 135 ARRLLLRAQKAGAIRKDVSVDDLVCMVTAISLSIEQGSTTKSRIAHLTDLFLDGV 189 ++ L AQ +G +R DV DDLV + A SL+ EQ + K+RIAHL LF+DG+ Sbjct: 121 GQQRLRSAQNSGVVRCDVCFDDLVVVAIATSLATEQHGSPKTRIAHLIGLFVDGI 175 >ref|ZP_06909865.1| TetR-family transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gb|EDY61914.1| TetR-family transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 192 Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 77/169 (45%), Positives = 104/169 (61%), Gaps = 10/169 (5%) Query: 9 LTEEPTLRADAARNRERILAAAEEVFLERGADASLDDIAKRAKVGIGTLYRRFPTREALL 68 +T+ T RADA RN +R+L A F ERG DASL++IA+ A VGIGTLYR FP R A++ Sbjct: 1 MTDTRTKRADARRNYDRLLTEARAAFAERGTDASLEEIARSAGVGIGTLYRHFPNRHAMM 60 Query: 69 AATNDERLMALTEASRRRDDKLDPDTSVRAFIKDLVAHACHYRGLAAAL-------GTVL 121 A E L AL E SR P T++ +++ L+ HA YRGLA AL + L Sbjct: 61 NAVFQESLAALLERSRELAGAEQPCTALVEWLRALITHAGEYRGLARALLSASHDRNSAL 120 Query: 122 KSGTPGCRASGEEARRLLLRAQKAGAIRKDVSVDDLVCMVTAISLSIEQ 170 + + R +GE RLL RAQ+ G++R DVS+DDL+ + AI+L+ EQ Sbjct: 121 SACSVPLRDAGE---RLLSRAQETGSVRADVSIDDLMQLTNAIALAAEQ 166 >ref|YP_003341907.1| TetR family transcriptional regulator [Streptosporangium roseum DSM 43021] gb|ACZ89164.1| putative transcriptional regulator, TetR family [Streptosporangium roseum DSM 43021] Length = 188 Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 81/187 (43%), Positives = 108/187 (57%), Gaps = 8/187 (4%) Query: 10 TEEPTLRADAARNRERILAAAEEVFLERGADASLDDIAKRAKVGIGTLYRRFPTREALLA 69 T+ P +RADA RN ER+LAAA + F G +ASL+DIA+ A+VGIGTLYR FPTR ALL Sbjct: 4 TQRP-MRADARRNYERLLAAARDAFAGHGTEASLEDIARSAEVGIGTLYRHFPTRRALLE 62 Query: 70 ATNDERLMALTEASRRRDDKLDPDTSVRAFIKDLVAHACHYRGLAAALGTVLKSGTP--- 126 A + + L +R + P+ ++ +++ L+AHA YRGLAAAL + + Sbjct: 63 AVLHDGIATLDARARELLESPSPEEALLEWLRHLMAHATTYRGLAAALMSSIHDPDSELY 122 Query: 127 -GCRASGEEARRLLLRAQKAGAIRKDVSVDDLVCMVTAISLSIEQGSTTKSRIAHLTDLF 185 C RLL AQ AGAIR D++ DLV +V AI+ + E G R L DL Sbjct: 123 GSCETMQTSGARLLAHAQNAGAIRPDLTGTDLVKLVNAIAWAGEHGENEADR---LLDLV 179 Query: 186 LDGVGVR 192 DG+ R Sbjct: 180 ADGLRTR 186