BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0075.p (109 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776897.1| transcription regulator protein [Herbaspiril... 224 3e-57 ref|YP_003817737.1| PadR family transcriptional regulator [Brevu... 140 5e-32 ref|ZP_05033370.1| transcriptional regulator, PadR family protei... 139 2e-31 ref|YP_002130487.1| predicted transcriptional regulator [Phenylo... 137 7e-31 ref|YP_001602223.1| PadR family transcriptional regulator [Gluco... 136 9e-31 ref|YP_004536229.1| PadR family transcriptional regulator,regula... 135 2e-30 ref|ZP_08646372.1| PadR-like family transcriptional regulator [A... 134 3e-30 ref|ZP_08268976.1| transcriptional regulator PadR-like family pr... 134 5e-30 ref|ZP_08263111.1| transcriptional regulator PadR-like family pr... 134 5e-30 ref|YP_001237020.1| PadR family transcriptional regulator [Brady... 131 3e-29 >ref|YP_003776897.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64989.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 109 Score = 224 bits (571), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 109/109 (100%), Positives = 109/109 (100%) Query: 1 MADHIPSQLKKGVLELCVLALLAQGDSYAYDLARNLAQAVDMGEGTIYPLMRRLQTDGLV 60 MADHIPSQLKKGVLELCVLALLAQGDSYAYDLARNLAQAVDMGEGTIYPLMRRLQTDGLV Sbjct: 1 MADHIPSQLKKGVLELCVLALLAQGDSYAYDLARNLAQAVDMGEGTIYPLMRRLQTDGLV 60 Query: 61 DSYQQESESGPSRKYYRLTEAGLLSLTAQKQDWQRFTASVNSILGVTHE 109 DSYQQESESGPSRKYYRLTEAGLLSLTAQKQDWQRFTASVNSILGVTHE Sbjct: 61 DSYQQESESGPSRKYYRLTEAGLLSLTAQKQDWQRFTASVNSILGVTHE 109 >ref|YP_003817737.1| PadR family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gb|ADL00114.1| transcriptional regulator, PadR-like family [Brevundimonas subvibrioides ATCC 15264] Length = 118 Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 67/105 (63%), Positives = 83/105 (79%) Query: 1 MADHIPSQLKKGVLELCVLALLAQGDSYAYDLARNLAQAVDMGEGTIYPLMRRLQTDGLV 60 M + I QLKKGVL LCVLALLA+ DSYAY++A L+ A+DMGEGTIYPLMRR+QTDGLV Sbjct: 1 MPETIEIQLKKGVLGLCVLALLARADSYAYEIASRLSDAIDMGEGTIYPLMRRMQTDGLV 60 Query: 61 DSYQQESESGPSRKYYRLTEAGLLSLTAQKQDWQRFTASVNSILG 105 ++Y ES SGPSRKYYRL+ AG +L AQ +W FT +V++I+ Sbjct: 61 ETYLVESSSGPSRKYYRLSPAGRDALAAQSAEWTHFTRAVDAIVA 105 >ref|ZP_05033370.1| transcriptional regulator, PadR family protein [Brevundimonas sp. BAL3] gb|EDX80799.1| transcriptional regulator, PadR family protein [Brevundimonas sp. BAL3] Length = 128 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 65/105 (61%), Positives = 82/105 (78%) Query: 1 MADHIPSQLKKGVLELCVLALLAQGDSYAYDLARNLAQAVDMGEGTIYPLMRRLQTDGLV 60 M + I QLKKGVL LCVLALL + DSYAY++A L+ A+DMGEGTIYPLMRR+Q+DG V Sbjct: 1 MTETIEIQLKKGVLGLCVLALLNRADSYAYEIASRLSDAIDMGEGTIYPLMRRMQSDGQV 60 Query: 61 DSYQQESESGPSRKYYRLTEAGLLSLTAQKQDWQRFTASVNSILG 105 ++Y ES SGPSRKYYRLT+AG +L AQ +W FT +V+++L Sbjct: 61 ETYLVESSSGPSRKYYRLTDAGRTALAAQTAEWSAFTQAVDAVLA 105 >ref|YP_002130487.1| predicted transcriptional regulator [Phenylobacterium zucineum HLK1] gb|ACG78058.1| predicted transcriptional regulator [Phenylobacterium zucineum HLK1] Length = 108 Score = 137 bits (344), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 66/105 (62%), Positives = 80/105 (76%) Query: 1 MADHIPSQLKKGVLELCVLALLAQGDSYAYDLARNLAQAVDMGEGTIYPLMRRLQTDGLV 60 M + I QLKKG LELCVLALL Q DSYAY++A L+ + MGEGTIYPLMRRLQ+DGLV Sbjct: 1 MPEAIEIQLKKGALELCVLALLHQHDSYAYEIASRLSDTIGMGEGTIYPLMRRLQSDGLV 60 Query: 61 DSYQQESESGPSRKYYRLTEAGLLSLTAQKQDWQRFTASVNSILG 105 ++Y ES SGP RKYYRLTEAG S +Q+ W+ F+ +V+ ILG Sbjct: 61 ETYLIESSSGPPRKYYRLTEAGKRSFASQQAAWKSFSGAVDDILG 105 >ref|YP_001602223.1| PadR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] ref|YP_002274617.1| PadR-like family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] emb|CAP55921.1| putative transcriptional regulator, PadR-like family [Gluconacetobacter diazotrophicus PAl 5] gb|ACI50002.1| transcriptional regulator, PadR-like family [Gluconacetobacter diazotrophicus PAl 5] Length = 111 Score = 136 bits (343), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 65/97 (67%), Positives = 75/97 (77%) Query: 8 QLKKGVLELCVLALLAQGDSYAYDLARNLAQAVDMGEGTIYPLMRRLQTDGLVDSYQQES 67 Q KKGVLELCVLALL++ DSY YD+A L+ A+DMGEGTIYPLMRR+Q DGLV +Y ES Sbjct: 7 QFKKGVLELCVLALLSRADSYGYDIASRLSDAIDMGEGTIYPLMRRMQKDGLVSTYLVES 66 Query: 68 ESGPSRKYYRLTEAGLLSLTAQKQDWQRFTASVNSIL 104 SGP RKYYRLTE G +L AQK W FT SV ++L Sbjct: 67 SSGPPRKYYRLTEGGRKNLDAQKAAWNDFTRSVAAVL 103 >ref|YP_004536229.1| PadR family transcriptional regulator,regulatory protein PadR [Novosphingobium sp. PP1Y] emb|CCA94411.1| PadR family transcriptional regulator,regulatory protein PadR [Novosphingobium sp. PP1Y] Length = 119 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 63/101 (62%), Positives = 79/101 (78%) Query: 4 HIPSQLKKGVLELCVLALLAQGDSYAYDLARNLAQAVDMGEGTIYPLMRRLQTDGLVDSY 63 I QLKKGVL LCVLALL++GDSYAY++A +A AVDMGEGTIYPLMRR+Q++GLV +Y Sbjct: 3 EIEIQLKKGVLGLCVLALLSRGDSYAYEIASRMADAVDMGEGTIYPLMRRMQSEGLVTTY 62 Query: 64 QQESESGPSRKYYRLTEAGLLSLTAQKQDWQRFTASVNSIL 104 +ES SGP RKYYR+T+ G L Q DW+ FT +VN ++ Sbjct: 63 LEESPSGPPRKYYRITDTGRERLAEQVGDWRTFTTAVNGLI 103 >ref|ZP_08646372.1| PadR-like family transcriptional regulator [Acetobacter tropicalis NBRC 101654] dbj|GAA09676.1| PadR-like family transcriptional regulator [Acetobacter tropicalis NBRC 101654] Length = 148 Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 64/98 (65%), Positives = 75/98 (76%) Query: 8 QLKKGVLELCVLALLAQGDSYAYDLARNLAQAVDMGEGTIYPLMRRLQTDGLVDSYQQES 67 Q KKGVLELCVLALL++ DSY YD+A L+ A+DMGEGTIYPLMRR+Q DGLV +Y ES Sbjct: 7 QFKKGVLELCVLALLSRTDSYGYDIASRLSDAIDMGEGTIYPLMRRMQKDGLVSTYFVES 66 Query: 68 ESGPSRKYYRLTEAGLLSLTAQKQDWQRFTASVNSILG 105 SGP RKYY LTE G SL AQ+ W FT +V++IL Sbjct: 67 SSGPPRKYYTLTETGRRSLEAQRTAWVTFTQAVSTILA 104 >ref|ZP_08268976.1| transcriptional regulator PadR-like family protein [Brevundimonas diminuta ATCC 11568] gb|EGF95498.1| transcriptional regulator PadR-like family protein [Brevundimonas diminuta ATCC 11568] Length = 143 Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 65/104 (62%), Positives = 80/104 (76%) Query: 1 MADHIPSQLKKGVLELCVLALLAQGDSYAYDLARNLAQAVDMGEGTIYPLMRRLQTDGLV 60 M D I QLKKGVL LCVLALLA+ DSYAY++A L+ A+ MGEGTIYPLMRR+QTDGLV Sbjct: 1 MPDTIDIQLKKGVLGLCVLALLARRDSYAYEIASRLSDAIGMGEGTIYPLMRRMQTDGLV 60 Query: 61 DSYQQESESGPSRKYYRLTEAGLLSLTAQKQDWQRFTASVNSIL 104 ++Y ES SGPSRKYYRLT AG +L Q +W+ F +V +++ Sbjct: 61 ETYLVESSSGPSRKYYRLTAAGRRALDGQTGEWRAFARAVEALI 104 >ref|ZP_08263111.1| transcriptional regulator PadR-like family protein [Asticcacaulis biprosthecum C19] gb|EGF92715.1| transcriptional regulator PadR-like family protein [Asticcacaulis biprosthecum C19] Length = 114 Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 64/107 (59%), Positives = 84/107 (78%) Query: 1 MADHIPSQLKKGVLELCVLALLAQGDSYAYDLARNLAQAVDMGEGTIYPLMRRLQTDGLV 60 M + I Q+KKGVL LCVLA+LA+G+SYAY++A L+ A+ MGEGTIYPLMRR+Q+DGLV Sbjct: 1 MPETIDIQMKKGVLGLCVLAVLARGESYAYEIASRLSDAIGMGEGTIYPLMRRMQSDGLV 60 Query: 61 DSYQQESESGPSRKYYRLTEAGLLSLTAQKQDWQRFTASVNSILGVT 107 D+Y ES +GPSRKYYRLT AG +L Q +W+ FT +V+++L T Sbjct: 61 DTYLVESSAGPSRKYYRLTSAGHRALQDQSSEWRGFTDAVDALLDPT 107 >ref|YP_001237020.1| PadR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ33114.1| transcriptional regulator, PadR family [Bradyrhizobium sp. BTAi1] Length = 103 Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 61/98 (62%), Positives = 79/98 (80%) Query: 8 QLKKGVLELCVLALLAQGDSYAYDLARNLAQAVDMGEGTIYPLMRRLQTDGLVDSYQQES 67 QLKKG LELCVLALLA+G+SYAY++A +L+ V +GEGTIYPLMRR+Q D LV++ ES Sbjct: 4 QLKKGALELCVLALLARGESYAYEIASSLSAGVGIGEGTIYPLMRRMQDDKLVETRLAES 63 Query: 68 ESGPSRKYYRLTEAGLLSLTAQKQDWQRFTASVNSILG 105 SGP RKYYRLT AG + AQK++W+ F+ +VN++LG Sbjct: 64 NSGPPRKYYRLTPAGRAAFAAQKREWRMFSDAVNTLLG 101