BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0060.p (680 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776924.1| flagellar capping protein [Herbaspirillum se... 1317 0.0 ref|YP_003774546.1| flagellar hook-associated protein 2 [Herbasp... 761 0.0 ref|YP_003775475.1| flagellar hook-associated 2 protein [Herbasp... 728 0.0 emb|CAP19679.2| flagellar hook-associated protein 2 [Herbaspiril... 723 0.0 ref|YP_792175.1| flagellar capping protein FliD [Pseudomonas aer... 154 5e-35 ref|NP_249785.1| flagellar capping protein FliD [Pseudomonas aer... 154 7e-35 ref|ZP_06880015.1| flagellar capping protein FliD [Pseudomonas a... 154 7e-35 ref|YP_003846871.1| flagellar hook-associated 2 domain-containin... 153 1e-34 ref|NP_841634.1| flagellar hook-associated protein 2 [Nitrosomon... 148 3e-33 ref|ZP_08485786.1| flagellar hook-associated 2 domain-containing... 147 4e-33 >ref|YP_003776924.1| flagellar capping protein [Herbaspirillum seropedicae SmR1] gb|ADJ65016.1| flagellar capping protein [Herbaspirillum seropedicae SmR1] Length = 680 Score = 1317 bits (3409), Expect = 0.0, Method: Compositional matrix adjust. Identities = 673/680 (98%), Positives = 676/680 (99%) Query: 1 MATSTGSISTSAGPLDVANLVNQLVSVESKSRLTPLASKADSFNALISAYGKLGTALTTY 60 MATSTGSISTSAGPLDVANLVNQLVSVESKSRLTPLASKADSFNALISAYGKLGTALTTY Sbjct: 1 MATSTGSISTSAGPLDVANLVNQLVSVESKSRLTPLASKADSFNALISAYGKLGTALTTY 60 Query: 61 QNALAELTAAKFSAQKAAVSNTGRSSDGKSGNDAVSADINTDASTKAQAQIIQSAGFASG 120 QNALAELTAAKFSAQKAAVSNTGRSSDGKSGNDAVSADIN+DASTKAQAQII+SAGFASG Sbjct: 61 QNALAELTAAKFSAQKAAVSNTGRSSDGKSGNDAVSADINSDASTKAQAQIIKSAGFASG 120 Query: 121 HLFKAGDSVAIKVGEASPSFITLKADATINGLRDTINAARAGVTASVVRDDAGDHLVLES 180 HLFKAGDSVAIKVGEASP FITLKADATINGLRDTINAARAGVTASVVRDDAGDHLVLES Sbjct: 121 HLFKAGDSVAIKVGEASPHFITLKADATINGLRDTINAARAGVTASVVRDDAGDHLVLES 180 Query: 181 NTAGTSKLLKVRANNSLSAISFDAQQSRPGAMTQTQAARDATSAAPGSYAISVEQLAQSH 240 NTAGT+ LLKVRANNSLSAISFDAQQSRPGAMTQTQAARDATSAAPGSYAISVEQLAQSH Sbjct: 181 NTAGTANLLKVRANNSLSAISFDAQQSRPGAMTQTQAARDATSAAPGSYAISVEQLAQSH 240 Query: 241 KLSSAGIAPGSTFDLGVLAIKAGSGSTTLIKPASNTLAGVRDAINAAAAGVNASIVSDGK 300 KLSSAGIAPGSTFDLGVLAIKAGSGSTTLIKPASNTLAGVRDAINAAAAGVNASIVSDGK Sbjct: 241 KLSSAGIAPGSTFDLGVLAIKAGSGSTTLIKPASNTLAGVRDAINAAAAGVNASIVSDGK 300 Query: 301 QEHLVLTAKESGANNALRISGTGDFAVFSSDPSGNASTASVTPEKRFSQGAVNLSVGART 360 QEHLVLTAKESGANNALRISGTGDFAVFSSDPSGNASTASVTPEKRFSQGAVNLSVGART Sbjct: 301 QEHLVLTAKESGANNALRISGTGDFAVFSSDPSGNASTASVTPEKRFSQGAVNLSVGART 360 Query: 361 ISLKPASATAGAAPALADVARAINEAKAGVSATVQREGQGDKAVERLVLSASGSDPVSLR 420 ISLKPASATAGAAP LADVARAINEAKAGVSATVQREGQGDKAVERLVLSASGSDPVSLR Sbjct: 361 ISLKPASATAGAAPGLADVARAINEAKAGVSATVQREGQGDKAVERLVLSASGSDPVSLR 420 Query: 421 GSGDYAVLAASAMGQLQKPQDARLSIDGVAITATSNTIKDAISGVTLNLNKTTSATDKLT 480 GSGDYAVLAASAMGQLQKPQDARLSIDGVAITATSNTIKDAISGVTLNLNKTTSATDKLT Sbjct: 421 GSGDYAVLAASAMGQLQKPQDARLSIDGVAITATSNTIKDAISGVTLNLNKTTSATDKLT 480 Query: 481 LAISNDSSGVGAAVNSFVNAFNTLAKAMAEMTRQAPAKVRGQAGEQGPLAGESMVRALTG 540 LAISNDSSGVGAAVNSFVNAFNTLAKAMAEMTRQAPAKVRGQAGEQG LAGESMVRALTG Sbjct: 481 LAISNDSSGVGAAVNSFVNAFNTLAKAMAEMTRQAPAKVRGQAGEQGLLAGESMVRALTG 540 Query: 541 ELRNAVLASMPGNALGSLTAIGVGFKKDGTLDLDSARLAKAGERNFEAVAQLFAGKEGLV 600 ELRNAVLASMPGNALGSLTAIGVGFKKDGTLDLDSARLAKAGERNFEAVAQLFAGKEGLV Sbjct: 541 ELRNAVLASMPGNALGSLTAIGVGFKKDGTLDLDSARLAKAGERNFEAVAQLFAGKEGLV 600 Query: 601 ARTRSLLDKVLGEQGLLAGKTRGLQGSLKIVSDQQAAARARLANLRDSYTNQFNRLNVTL 660 ARTRSLLDKVLGEQGLLAGKTRGLQGSLKIVSDQQAAARARLANLRDSYTNQFNRLNVTL Sbjct: 601 ARTRSLLDKVLGEQGLLAGKTRGLQGSLKIVSDQQAAARARLANLRDSYTNQFNRLNVTL 660 Query: 661 SKMQASQNYLTQQLARLRRP 680 SKMQASQNYLTQQLARLRRP Sbjct: 661 SKMQASQNYLTQQLARLRRP 680 >ref|YP_003774546.1| flagellar hook-associated protein 2 [Herbaspirillum seropedicae SmR1] emb|CAP19674.1| flagellar hook-associated protein 2 [Herbaspirillum seropedicae] gb|ADJ62638.1| flagellar hook-associated protein 2 [Herbaspirillum seropedicae SmR1] Length = 676 Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/680 (56%), Positives = 509/680 (74%), Gaps = 7/680 (1%) Query: 1 MATSTGSISTSAGPLDVANLVNQLVSVESKSRLTPLASKADSFNALISAYGKLGTALTTY 60 MATSTG+ISTSAGPLDVA LVNQL+SVESKSRLTPL +K SFN LISAYG L A T+Y Sbjct: 1 MATSTGTISTSAGPLDVATLVNQLISVESKSRLTPLKNKESSFNTLISAYGSLKNAFTSY 60 Query: 61 QNALAELTAAKFSAQKAAVSNTGRSSDGKSGNDAVSADINTDASTKAQAQIIQSAGFASG 120 Q+AL LTAA FSAQK +SN G ++ + D +AD NTD STK AQ +QSAGF +G Sbjct: 61 QSALKTLTAASFSAQKTTLSNAGTGTNLTT--DPFTADTNTDESTKVLAQKLQSAGFTAG 118 Query: 121 HLFKAGDSVAIKVGEASPSFITLKADATINGLRDTINAARAGVTASVVRDDAGDHLVLES 180 F AGDSVAIKVG P+FITL+A+AT+ G+RD INAA+AGVTAS+ D +GDHLVLES Sbjct: 119 QTFNAGDSVAIKVGTNQPTFITLQANATLAGVRDAINAAKAGVTASITTDGSGDHLVLES 178 Query: 181 NTAGTSKLLKVRANNSLSAISFDAQQSRPGAMTQTQAARDATSAAPGSYAISVEQLAQSH 240 NT GT+ +K+ ANNSLS++++D + +TQ QA RDA+ AA G Y I+V QLAQ+ Sbjct: 179 NTGGTANTIKITANNSLSSLAYDPSSNVSSTVTQIQAPRDASKAAAGKYNIAVNQLAQAV 238 Query: 241 KLSSAGIAPGSTFDLGVLAIKAGSGSTTLIKPASNTLAGVRDAINAAAAGVNASIVSDGK 300 K+SSAGIAPGSTFD GVLAIK G+GST +I+P +N+LAGVRDAINA+ AGVNASIV+DG Sbjct: 239 KVSSAGIAPGSTFDNGVLAIKTGNGSTAIIQPKTNSLAGVRDAINASDAGVNASIVNDGT 298 Query: 301 QEHLVLTAKESGANNALRISGTGDFAVFSSDPSGNASTASVTPEKRFSQGAVNLSVGART 360 +HLVLTAK++G+ N LR++GTG+FA F+ DPSG +T V + +S G++ L VG+++ Sbjct: 299 NDHLVLTAKDAGSANTLRVTGTGNFAAFNFDPSGTITTTGVATNQTYSSGSLALQVGSKS 358 Query: 361 ISLKPASATAGAAPALADVARAINEAKAGVSATVQREGQGDKAVERLVLSASGSDPVSLR 420 ++ P A L DV +AIN+A GV+A++ +G D LVL+ SG+D V L Sbjct: 359 FTINPTDLDGSGAIGLNDVMKAINDANTGVTASITNDGSKD----HLVLTPSGTDAVKLT 414 Query: 421 GSGDYAVLAASAMGQLQKPQDARLSIDGVAITATSNTIKDAISGVTLNLNKTTSATDKLT 480 G+GDY+ LA S+MGQL K QDA+L++DGV +T+TSN + + ISGVTLNL+K T++ D + Sbjct: 415 GAGDYSDLAGSSMGQLAKAQDAKLTVDGVTVTSTSNKVTNVISGVTLNLSKVTTSADNFS 474 Query: 481 LAISNDSSGVGAAVNSFVNAFNTLAKAMAEMTRQAPAKVRGQAGEQGPLAGESMVRALTG 540 L+I+ND+SG+ A N+FV A+NTLAKA+A +T+Q P+ +GQA PLA ES V AL G Sbjct: 475 LSINNDTSGLSTAANTFVTAYNTLAKAVANLTKQTPSTTKGQASTGSPLASESSVLALMG 534 Query: 541 ELRNAVLASMPGNALGSLTAIGVGFKKDGTLDLDSARLAKAGERNFEAVAQLF-AGKEGL 599 ++RN +L ++ N +L+ IG+ F+KDGTL LD+ +L A ++F+ + QLF + G+ Sbjct: 535 QVRNTMLGALGDNGATNLSQIGISFQKDGTLALDATKLTNAANKDFDGITQLFTSATNGV 594 Query: 600 VARTRSLLDKVLGEQGLLAGKTRGLQGSLKIVSDQQAAARARLANLRDSYTNQFNRLNVT 659 V + + L+D +LGE G+LA KT+GLQ SLKIV+DQQ AA ARL +L+D+YTNQFNRLNVT Sbjct: 595 VPKLQKLMDGILGESGVLASKTKGLQDSLKIVTDQQTAANARLQDLKDTYTNQFNRLNVT 654 Query: 660 LSKMQASQNYLTQQLARLRR 679 L+ MQ+ Q+YLTQQLA+L + Sbjct: 655 LATMQSRQSYLTQQLAKLSK 674 >ref|YP_003775475.1| flagellar hook-associated 2 protein [Herbaspirillum seropedicae SmR1] gb|ADJ63567.1| flagellar hook-associated 2 protein [Herbaspirillum seropedicae SmR1] Length = 690 Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/694 (55%), Positives = 504/694 (72%), Gaps = 22/694 (3%) Query: 1 MATSTGSISTSAGPLDVANLVNQLVSVESKSRLTPLASKADSFNALISAYGKLGTALTTY 60 MATSTG+ISTSAGPLDVA LV+QL+S ES+S+LTPL ++A S+N LISAYG L +A++TY Sbjct: 1 MATSTGTISTSAGPLDVATLVSQLISAESQSQLTPLTTQASSYNTLISAYGSLKSAMSTY 60 Query: 61 QNALAELTAAKFSAQKAAVSNTGRSSDGKSGNDAVSADINTDASTKAQAQIIQSAGFASG 120 Q+A+ +T+A FSAQK++VSN G S+ + D SADIN D STK AQ IQSAG +SG Sbjct: 61 QSAIKAMTSASFSAQKSSVSNAGTGSNLTT--DPFSADINGDDSTKILAQKIQSAGISSG 118 Query: 121 HLFKAGDSVAIKVGEASPSFITLKADATINGLRDTINAARAGVTASVVRDDAGDHLVLES 180 F AGDS+AIK+G SP F+TL+A++T+ G+RD INA + G TAS+V D AGDHLVLES Sbjct: 119 TTFNAGDSIAIKIGTNSPVFVTLQANSTLAGVRDAINAGKTGATASIVTDGAGDHLVLES 178 Query: 181 NTAGTSKLLKVRANNSLSAISFDAQQSRPGAMTQTQAARDATSAAPGSYAISVEQLAQSH 240 NT GT+ +KV ANNSLS +D S P MTQTQA RDAT AA G+YA++V QLAQ+ Sbjct: 179 NTGGTANTIKVTANNSLSGFFYDPSSSTPSTMTQTQAPRDATKAASGNYAVAVSQLAQAE 238 Query: 241 KLSSAGIAPGSTFDLGVLAIKAGSGSTTLIKPASNTLAGVRDAINAAAAGVNASIVSDGK 300 KLSSA IAPGSTFD G+LAIK GSGSTT+IKP +NTLAGVRDAIN++ AGVNA+IVSDG Sbjct: 239 KLSSASIAPGSTFDNGLLAIKTGSGSTTIIKPTTNTLAGVRDAINSSDAGVNATIVSDGT 298 Query: 301 QEHLVLTAKESGANNALRISGTGDFAVFSSDPSGNASTASVTPEKRFSQGAVNLSVGART 360 +HLV+TAK SG+ N ++I+GT +FAVF+SDPSG ++ +V + +S G + L VG + Sbjct: 299 NDHLVVTAKNSGSTNTIKITGTENFAVFNSDPSGTVTSPNVASGQTYSAGNLTLKVGDSS 358 Query: 361 ISLKPASATAGAAPALADVARAINEAKAGVSATVQREGQGDKAVERLVLSASGSD---PV 417 ++ P + +G L V AIN A AGV+A++ +G D LVL+ +GS V Sbjct: 359 FNIAPVANGSGNID-LTQVKLAINNANAGVTASITNDGSND----HLVLTPTGSSATAAV 413 Query: 418 SLRGSGDYAVLAASAMGQLQKPQDARLSIDGVAITATSNTIKDAISGVTLNLNKTTSATD 477 SL G+ DYA L+ S MGQL K QDA+LSIDGV +T+ +N +++ ISGVTLNL+K T++ D Sbjct: 414 SLTGTSDYAGLSMSGMGQLLKAQDAKLSIDGVNVTSPTNKVENVISGVTLNLSKVTTSAD 473 Query: 478 KLTLAISNDSSGVGAAVNSFVNAFNTLAKAMAEMTRQAPAKVRGQAGEQGPLAGESMVRA 537 TL ISND+SG+ A NSFV A+NTLAKA+A MT Q P+ GQA PLA ES V+ Sbjct: 474 NFTLNISNDTSGITTAANSFVTAYNTLAKAVAGMTAQTPSTTLGQANTSAPLASESSVQT 533 Query: 538 LTGELRNAVLASMP-GNALGSLTAIGVGFKKDGTLDLDSARLAKAGERNFEAVAQLFAG- 595 + +LRN + +++ GN + +L+ IG+ F+KDGTL LDS +L+ A NF +A LFAG Sbjct: 534 IMSQLRNTLFSTVDGGNGINTLSDIGISFQKDGTLALDSTKLSTAATNNFAGIANLFAGT 593 Query: 596 ----------KEGLVARTRSLLDKVLGEQGLLAGKTRGLQGSLKIVSDQQAAARARLANL 645 K G+V + ++L+ +L + G++A KT GLQ SLKI D+Q A ++RL+NL Sbjct: 594 DPDPTNTTSSKNGIVTKLQTLMTSLLSDNGIIATKTSGLQASLKINQDRQTAVQSRLSNL 653 Query: 646 RDSYTNQFNRLNVTLSKMQASQNYLTQQLARLRR 679 +D+YTNQFN+LN+TLS MQ++Q+YLTQQLA L + Sbjct: 654 KDAYTNQFNQLNLTLSSMQSTQSYLTQQLANLAK 687 >emb|CAP19679.2| flagellar hook-associated protein 2 [Herbaspirillum seropedicae] Length = 690 Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/694 (54%), Positives = 503/694 (72%), Gaps = 22/694 (3%) Query: 1 MATSTGSISTSAGPLDVANLVNQLVSVESKSRLTPLASKADSFNALISAYGKLGTALTTY 60 MATSTG+ISTSAGPLDVA LV+QL+S ES+S+LTPL ++A S+N LISAYG L +A++TY Sbjct: 1 MATSTGTISTSAGPLDVATLVSQLISAESQSQLTPLTTQASSYNTLISAYGSLKSAMSTY 60 Query: 61 QNALAELTAAKFSAQKAAVSNTGRSSDGKSGNDAVSADINTDASTKAQAQIIQSAGFASG 120 Q+A+ +T+A FSAQK++VSN G S+ + D SADIN D STK AQ IQSAG +SG Sbjct: 61 QSAIKAMTSASFSAQKSSVSNAGTGSNLTT--DPFSADINGDDSTKILAQKIQSAGISSG 118 Query: 121 HLFKAGDSVAIKVGEASPSFITLKADATINGLRDTINAARAGVTASVVRDDAGDHLVLES 180 F AGDS+AIK+G SP F+TL+A++T+ G+RD INA + G TAS+V D AGDHLVLES Sbjct: 119 TTFNAGDSIAIKIGTNSPVFVTLQANSTLAGVRDAINAGKTGATASIVTDGAGDHLVLES 178 Query: 181 NTAGTSKLLKVRANNSLSAISFDAQQSRPGAMTQTQAARDATSAAPGSYAISVEQLAQSH 240 NT GT+ +KV ANNSLS +D S P MTQTQA RDAT AA G+YA++V QLAQ+ Sbjct: 179 NTGGTANTIKVTANNSLSGFFYDPSSSTPSTMTQTQAPRDATKAASGNYAVAVSQLAQAE 238 Query: 241 KLSSAGIAPGSTFDLGVLAIKAGSGSTTLIKPASNTLAGVRDAINAAAAGVNASIVSDGK 300 KLSSA IAPGSTFD G+LAIK GSGSTT+IKP +NTLAGVRDAIN++ AGVNA+IVSDG Sbjct: 239 KLSSASIAPGSTFDNGLLAIKTGSGSTTIIKPTTNTLAGVRDAINSSDAGVNATIVSDGT 298 Query: 301 QEHLVLTAKESGANNALRISGTGDFAVFSSDPSGNASTASVTPEKRFSQGAVNLSVGART 360 +HLV+TAK SG+ N ++I+GT +FAVF+SDPSG ++ +V + +S G + L VG + Sbjct: 299 NDHLVVTAKNSGSTNTIKITGTENFAVFNSDPSGTVTSPNVASGQTYSAGNLTLKVGDSS 358 Query: 361 ISLKPASATAGAAPALADVARAINEAKAGVSATVQREGQGDKAVERLVLSASGSD---PV 417 ++ P + +G L V AIN A AGV+A++ +G D LVL+ +GS V Sbjct: 359 FNIAPVANGSGNID-LTQVKLAINNANAGVTASITNDGSND----HLVLTPTGSSATAAV 413 Query: 418 SLRGSGDYAVLAASAMGQLQKPQDARLSIDGVAITATSNTIKDAISGVTLNLNKTTSATD 477 SL G+ DYA L+ S MGQL + + A+LSIDGV +T+ +N +++ ISGVTLNL+K T++ D Sbjct: 414 SLTGTSDYAGLSMSGMGQLSRRRTAKLSIDGVNVTSPTNKVENVISGVTLNLSKVTTSAD 473 Query: 478 KLTLAISNDSSGVGAAVNSFVNAFNTLAKAMAEMTRQAPAKVRGQAGEQGPLAGESMVRA 537 TL ISND+SG+ A NSFV A+NTLAKA+A MT Q P+ GQA PLA ES V+ Sbjct: 474 NFTLNISNDTSGITTAANSFVTAYNTLAKAVAGMTAQTPSTTLGQANTSAPLASESSVQT 533 Query: 538 LTGELRNAVLASMP-GNALGSLTAIGVGFKKDGTLDLDSARLAKAGERNFEAVAQLFAG- 595 + +LRN + +++ GN + +L+ IG+ F+KDGTL LDS +L+ A NF +A LFAG Sbjct: 534 IMSQLRNTLFSTVDGGNGINTLSDIGISFQKDGTLALDSTKLSTAATNNFAGIANLFAGT 593 Query: 596 ----------KEGLVARTRSLLDKVLGEQGLLAGKTRGLQGSLKIVSDQQAAARARLANL 645 K G+V + ++L+ +L + G++A KT GLQ SLKI D+Q A ++RL+NL Sbjct: 594 DPDPTNTTSSKNGIVTKLQTLMTSLLSDNGIIATKTSGLQASLKINQDRQTAVQSRLSNL 653 Query: 646 RDSYTNQFNRLNVTLSKMQASQNYLTQQLARLRR 679 +D+YTNQFN+LN+TLS MQ++Q+YLTQQLA L + Sbjct: 654 KDAYTNQFNQLNLTLSSMQSTQSYLTQQLANLAK 687 >ref|YP_792175.1| flagellar capping protein FliD [Pseudomonas aeruginosa UCBPP-PA14] gb|ABJ10259.1| flagellar capping protein FliD [Pseudomonas aeruginosa UCBPP-PA14] Length = 474 Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 122/360 (33%), Positives = 180/360 (50%), Gaps = 41/360 (11%) Query: 346 RFSQGAVNLSVGARTISLKPASATAGAAPALADVARAINEA--KAGVSATVQREGQGDKA 403 +F+ G +N+SVG + PA + LA + AIN+A +AGVSAT+ + G Sbjct: 120 KFNSGTLNISVGDTKL---PAITVDSSNNTLAGMRDAINQAGKEAGVSATIITDNSG--- 173 Query: 404 VERLVLSAS----GSD---PVSLRGSGDYAVLA--------------ASAMGQLQKPQDA 442 RLVLS++ G D VS GSG L+ +A G + K + Sbjct: 174 -SRLVLSSTKTGDGKDIKVEVSDDGSGGNTSLSQLAFDPATAPKLSDGAAAGYVTKAANG 232 Query: 443 RLSIDGVAITATSNTIKDAISGVTLNLNKTTSATDKLTLAISNDSSGVGAAVNSFVNAFN 502 +++DG+ + SN++ D I GV+ ++ T A +TL +S D +GV V FV A+N Sbjct: 233 EITVDGLKRSIASNSVSDVIDGVSFDVKAVTEAGKPITLTVSRDDAGVKENVKKFVEAYN 292 Query: 503 TLAKAMAEMTRQAPAKVRGQAGEQ-----GPLAGESMVRALTGELRNAVLASMPGNALGS 557 TL K + E T V + GE G L G++ VRAL +R+ ++AS ++ + Sbjct: 293 TLTKFINEQT------VVTKVGEDKTPVTGALLGDASVRALVNTMRSELIASNENGSVRN 346 Query: 558 LTAIGVGFKKDGTLDLDSARLAKAGERNFEAVAQLFAGKEGLVARTRSLLDKVLGEQGLL 617 L A+G+ KDGTL++D +L KA +FE VA F G GL R + QG+L Sbjct: 347 LAALGITTTKDGTLEIDEKKLDKAISADFEGVASYFTGDTGLAKRLGDKMKPYTDAQGIL 406 Query: 618 AGKTRGLQGSLKIVSDQQAAARARLANLRDSYTNQFNRLNVTLSKMQASQNYLTQQLARL 677 +T LQ +L V Q+A RLA L++ T QFN L+ +M Q +T LA L Sbjct: 407 DQRTTTLQKTLSNVDTQKADLAKRLAALQEKLTTQFNLLSAMQDEMTKRQKSITDNLASL 466 >ref|NP_249785.1| flagellar capping protein FliD [Pseudomonas aeruginosa PAO1] ref|YP_002441811.1| flagellar capping protein FliD [Pseudomonas aeruginosa LESB58] ref|ZP_04927553.1| flagellar capping protein FliD [Pseudomonas aeruginosa C3719] sp|Q9K3C5.1|FLID2_PSEAE RecName: Full=B-type flagellar hook-associated protein 2; Short=HAP2; AltName: Full=Filament cap protein; AltName: Full=Flagellar cap protein gb|AAF35974.1|AF139819_1 flagellar cap protein FliD [Pseudomonas aeruginosa] gb|AAF35975.1|AF139820_1 flagellar cap protein FliD [Pseudomonas aeruginosa] gb|AAF35976.1|AF139821_1 flagellar cap protein FliD [Pseudomonas aeruginosa PAO1] gb|AAG04483.1|AE004540_3 flagellar capping protein FliD [Pseudomonas aeruginosa PAO1] gb|EAZ51672.1| flagellar capping protein FliD [Pseudomonas aeruginosa C3719] emb|CAW28982.1| flagellar capping protein FliD [Pseudomonas aeruginosa LESB58] dbj|GAA16626.1| flagellar capping protein FliD [Pseudomonas aeruginosa NCMG1179] Length = 474 Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 122/360 (33%), Positives = 180/360 (50%), Gaps = 41/360 (11%) Query: 346 RFSQGAVNLSVGARTISLKPASATAGAAPALADVARAINEA--KAGVSATVQREGQGDKA 403 +F+ G +N+SVG + PA + LA + AIN+A +AGVSAT+ + G Sbjct: 120 KFNSGTLNISVGDTKL---PAITVDSSNNTLAGMRDAINQAGKEAGVSATIITDNSG--- 173 Query: 404 VERLVLSAS----GSD---PVSLRGSGDYAVLA--------------ASAMGQLQKPQDA 442 RLVLS++ G D VS GSG L+ +A G + K + Sbjct: 174 -SRLVLSSTKTGDGKDIKVEVSDDGSGGNTSLSQLAFDPATAPKLSDGAAAGYVTKAANG 232 Query: 443 RLSIDGVAITATSNTIKDAISGVTLNLNKTTSATDKLTLAISNDSSGVGAAVNSFVNAFN 502 +++DG+ + SN++ D I GV+ ++ T A +TL +S D +GV V FV A+N Sbjct: 233 EITVDGLKRSIASNSVSDVIDGVSFDVKAVTEAGKPITLTVSRDDAGVKDNVKKFVEAYN 292 Query: 503 TLAKAMAEMTRQAPAKVRGQAGEQ-----GPLAGESMVRALTGELRNAVLASMPGNALGS 557 TL K + E T V + GE G L G++ VRAL +R+ ++AS ++ + Sbjct: 293 TLTKFINEQT------VVTKVGEDKNPVTGALLGDASVRALVNTMRSELIASNENGSVRN 346 Query: 558 LTAIGVGFKKDGTLDLDSARLAKAGERNFEAVAQLFAGKEGLVARTRSLLDKVLGEQGLL 617 L A+G+ KDGTL++D +L KA +FE VA F G GL R + QG+L Sbjct: 347 LAALGITTTKDGTLEIDEKKLDKAISADFEGVASYFTGDTGLAKRLGDKMKPYTDAQGIL 406 Query: 618 AGKTRGLQGSLKIVSDQQAAARARLANLRDSYTNQFNRLNVTLSKMQASQNYLTQQLARL 677 +T LQ +L V Q+A RLA L++ T QFN L+ +M Q +T LA L Sbjct: 407 DQRTTTLQKTLSNVDTQKADLAKRLAALQEKLTTQFNLLSAMQDEMTKRQKSITDNLASL 466 >ref|ZP_06880015.1| flagellar capping protein FliD [Pseudomonas aeruginosa PAb1] gb|EGM23897.1| flagellar capping protein FliD [Pseudomonas aeruginosa 152504] Length = 474 Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 122/360 (33%), Positives = 180/360 (50%), Gaps = 41/360 (11%) Query: 346 RFSQGAVNLSVGARTISLKPASATAGAAPALADVARAINEA--KAGVSATVQREGQGDKA 403 +F+ G +N+SVG + PA + LA + AIN+A +AGVSAT+ + G Sbjct: 120 KFNSGTLNISVGDTKL---PAITVDSSNNTLAGMRDAINQAGKEAGVSATIITDNSG--- 173 Query: 404 VERLVLSAS----GSD---PVSLRGSGDYAVLA--------------ASAMGQLQKPQDA 442 RLVLS++ G D VS GSG L+ +A G + K + Sbjct: 174 -SRLVLSSTKTGDGKDIKVEVSDDGSGGNTSLSQLAFDPATAPKLSDGAAAGYVTKAANG 232 Query: 443 RLSIDGVAITATSNTIKDAISGVTLNLNKTTSATDKLTLAISNDSSGVGAAVNSFVNAFN 502 +++DG+ + SN++ D I GV+ ++ T A +TL +S D +GV V FV A+N Sbjct: 233 EITVDGLKRSIASNSVSDVIDGVSFDVKAVTEAGKPITLTVSRDDAGVKDNVKKFVEAYN 292 Query: 503 TLAKAMAEMTRQAPAKVRGQAGEQ-----GPLAGESMVRALTGELRNAVLASMPGNALGS 557 TL K + E T V + GE G L G++ VRAL +R+ ++AS ++ + Sbjct: 293 TLTKFINEQT------VVTKVGEDKTPVTGALLGDASVRALVNTMRSELIASNENGSVRN 346 Query: 558 LTAIGVGFKKDGTLDLDSARLAKAGERNFEAVAQLFAGKEGLVARTRSLLDKVLGEQGLL 617 L A+G+ KDGTL++D +L KA +FE VA F G GL R + QG+L Sbjct: 347 LAALGITTTKDGTLEIDEKKLDKAISADFEGVASYFTGDTGLAKRLGDKMKPYTDAQGIL 406 Query: 618 AGKTRGLQGSLKIVSDQQAAARARLANLRDSYTNQFNRLNVTLSKMQASQNYLTQQLARL 677 +T LQ +L V Q+A RLA L++ T QFN L+ +M Q +T LA L Sbjct: 407 DQRTTTLQKTLSNVDTQKADLAKRLAALQEKLTTQFNLLSAMQDEMTKRQKSITDNLASL 466 >ref|YP_003846871.1| flagellar hook-associated 2 domain-containing protein [Gallionella capsiferriformans ES-2] gb|ADL55107.1| flagellar hook-associated 2 domain-containing protein [Gallionella capsiferriformans ES-2] Length = 477 Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 106/315 (33%), Positives = 165/315 (52%), Gaps = 24/315 (7%) Query: 376 LADVARAINEAKAGVSATVQREGQGDKAVERLVLSASG-SDPVSLRGSGDYAVL------ 428 L ++ AIN A G++AT+ +G L +A+G S+ V + SG L Sbjct: 174 LQGISDAINAANIGMTATIVNDGSSSPYRLTLTSTATGISNSVKISTSGGDGTLDTLLAN 233 Query: 429 ------AASAMGQLQKPQDARLSIDGVAITATSNTIKDAISGVTLNLNKTTSATDKLTLA 482 AA M Q Q++ +++G+AIT TSNT+ +A+ GVTLNLN ++A +TL Sbjct: 234 DPTGLPAAQHMNQTVAAQNSNFTVNGIAITNTSNTVTNAMQGVTLNLNTISAA--PVTLT 291 Query: 483 ISNDSSGVGAAVNSFVNAFNTLAKAMAEMTRQAPAKVRGQAGEQGPLAGESMVRALTGEL 542 I+ D++ V AV++FV+A+N +M M + A A G PLAG+ +R L ++ Sbjct: 292 IARDTTAVSTAVSNFVSAYN----SMYSMLQTASAYKSGS-----PLAGDPTLRDLQTQM 342 Query: 543 RNAVLASMPGNALGSLTAIGVGFKKDGTLDLDSARLAKAGERNFEAVAQLFAGKEGLVAR 602 R ++ G L ++ G+ F G + LDSA+L+ A N+ AVA LF G Sbjct: 343 RGIAAGAVTGGTLSAIGDAGISFTAAGVMQLDSAKLSTALSNNYSAVANLFNSSTGFATS 402 Query: 603 TRSLLDKVLGEQGLLAGKTRGLQGSLKIVSDQQAAARARLANLRDSYTNQFNRLNVTLSK 662 ++ L G A +T L ++K +D+ A LAN+ Y Q++ LNV L++ Sbjct: 403 FENMAKNTLAFDGAFANRTASLNQAVKSNNDRIGVMEANLANIEKRYRAQYSSLNVMLAE 462 Query: 663 MQASQNYLTQQLARL 677 M + +YLTQQL+RL Sbjct: 463 MGKTSSYLTQQLSRL 477 >ref|NP_841634.1| flagellar hook-associated protein 2 [Nitrosomonas europaea ATCC 19718] emb|CAD85506.1| Flagellar hook-associated protein 2 [Nitrosomonas europaea ATCC 19718] Length = 481 Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 110/350 (31%), Positives = 175/350 (50%), Gaps = 44/350 (12%) Query: 358 ARTISLKPASATAGAAPALADVARAINEAKAGVSATVQREGQGDKAV---------ERLV 408 A+TI++ PA +T LAD+ AINEA AGV+A++ +G G++ V L Sbjct: 145 AKTITIDPAKST------LADIRSAINEANAGVTASIVNDGSGNRLVISSKDSGLANALK 198 Query: 409 LSASGSDPVSLRGSG------DYAVLAASAMGQLQKPQDARLSIDGVAITATSNTIKDAI 462 +S + +D +G D + S M + ++A + IDG+ +T +SNTI DA+ Sbjct: 199 ISVNDTDGNHTDNAGLSKLAFDASTGGVSNMTETVAARNAVMVIDGIPVTKSSNTINDAL 258 Query: 463 SGVTLNLNKTTSATDKLTLAISNDSSGVGAAVNSFVNAFNTLAKAMAEMTRQAPAKVRGQ 522 GVT NL K T TL + D S V AAVN+FV A+N L K + ++R A + Sbjct: 259 EGVTFNLLKANPGT-TTTLTVEKDKSNVEAAVNAFVKAYNDLEKTIGNLSRYDAANKQAS 317 Query: 523 AGEQGPLAGESMVRALTGELRNAVLASMPGN-----ALGSLTAIGVGFKKDGTLDLDSAR 577 L G+S +R + +R A + GN + SL+ +G+ F+KDGTL LD+ + Sbjct: 318 V-----LTGDSTMRMIQNRMR----AMLGGNQSAAGGINSLSELGISFQKDGTLALDNNK 368 Query: 578 LAKAGERNFEAVAQLFAGK--------EGLVARTRSLLDKVLGEQGLLAGKTRGLQGSLK 629 L+ + +A F + EG +R L+D + GL++ + G+ ++K Sbjct: 369 LSAVLNNPDKNIAAFFTTQGGDDTTSVEGFASRLSELIDGMTRSDGLISSRMDGINSTIK 428 Query: 630 IVSDQQAAARARLANLRDSYTNQFNRLNVTLSKMQASQNYLTQQLARLRR 679 + Q+ A RL ++ QF L+ ++ M + NYL QQLA L + Sbjct: 429 GIGKQREALEFRLESVEKRLRAQFTALDTMIASMNQTSNYLQQQLANLPK 478 Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 94/304 (30%), Positives = 154/304 (50%), Gaps = 44/304 (14%) Query: 15 LDVANLVNQLVSVESKSRLTPLASKADSFNALISAYGKLGTALTTYQNALAEL-TAAKFS 73 LDV+ ++++L+ +E + LT L +K A +SA+G L + L+T+Q+++ L A F+ Sbjct: 11 LDVSGIISKLMEIEQQP-LTQLNTKEAKQQAQLSAFGSLKSVLSTFQDSVKALAKPALFN 69 Query: 74 AQKAAVSNTGRSSDGKSGNDAVSADINTDASTKAQAQIIQSAGFASGHLFKAGDSVAIKV 133 KA +++T ++ S + + + + + AQAQ I+S FA+ ++ I+ Sbjct: 70 GYKATLADTTAATVSTSSSASAGTH-DIEVQSLAQAQKIKSEAFATTDTVIGSGTLTIEF 128 Query: 134 G------------EASPSFITLK-ADATINGLRDTINAARAGVTASVVRDDAGDHLVLES 180 G E + IT+ A +T+ +R IN A AGVTAS+V D +G+ LV+ S Sbjct: 129 GTYNEDGTFTANAEKTAKTITIDPAKSTLADIRSAINEANAGVTASIVNDGSGNRLVISS 188 Query: 181 NTAGTSKLLKVRANNS---------LSAISFDAQQSRPGAMTQTQAARDATSAAPGSYAI 231 +G + LK+ N++ LS ++FDA MT+T AAR+A G I Sbjct: 189 KDSGLANALKISVNDTDGNHTDNAGLSKLAFDASTGGVSNMTETVAARNAVMVIDG---I 245 Query: 232 SVEQLAQSHKLSSAGIAPGSTFDLGVLAIKAGSGSTTLIKPASNTLAGVRDAINAAAAGV 291 V + S+ ++ A G TF+L +KA G+TT TL +D N AA V Sbjct: 246 PVTK--SSNTINDA--LEGVTFNL----LKANPGTTT-------TLTVEKDKSNVEAA-V 289 Query: 292 NASI 295 NA + Sbjct: 290 NAFV 293 >ref|ZP_08485786.1| flagellar hook-associated 2 domain-containing protein [Methylomicrobium album BG8] gb|EGL03319.1| flagellar hook-associated 2 domain-containing protein [Methylomicrobium album BG8] Length = 458 Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 112/341 (32%), Positives = 186/341 (54%), Gaps = 26/341 (7%) Query: 349 QGAVNLSVGARTISLKPASATAGAAPALADVARAINEA--KAGVSATVQREGQGDKAV-- 404 +G++ + +G+ + ++ GA LA + AIN A GV AT+ + G + V Sbjct: 124 EGSLKIDLGSSSFNIA-----VGADTTLAGLRDAINSATDNPGVKATIIKVDTGSQLVLT 178 Query: 405 -ERL----VLSASGSDPVSLRGSGDYAVLAASAMGQLQKPQDARLSIDGVAITATSNTIK 459 E++ +S + +D + G D + LA + + +Q QDA + IDG +T SN+ Sbjct: 179 SEKVGAANTISITATDANASDGK-DLSRLATANLTTVQSAQDAIIHIDGQQVTRDSNSFS 237 Query: 460 DAISGVTLNLNKTTSATD-KLTLAISNDSSGVGAAVNSFVNAFNTLAKAMAEMTRQAPAK 518 DAI+GVTL+L K AT K+T+A+ D S V + +N F+ ++N+L M+ ++ A Sbjct: 238 DAITGVTLSLVKADPATTGKITVAM--DKSSVTSKLNDFIKSYNSLVNTMSNLSSYNAAT 295 Query: 519 VRGQAGEQGPLAGESMVRALTGELRNAVLASMP--GNALGSLTAIGVGFKKDGTLDLDSA 576 G GPL G++ +R + +LR VL+S+ G + +L IG+ K G L LDS+ Sbjct: 296 QTG-----GPLLGDATLRGVQNQLRQ-VLSSVVQGGGGISALADIGIVSDKTGNLQLDSS 349 Query: 577 RLAKAGERNFEAVAQLFAGKEGLVARTRSLLDKVLGEQGLLAGKTRGLQGSLKIVSDQQA 636 +L KA NF+A+A LF+ + GL + S L L G L+ + G+ S+ ++DQ+ Sbjct: 350 KLDKAMTTNFDAIANLFSSENGLAKKFDSTLTTYLSSDGPLSSRINGVNKSIAGIADQRD 409 Query: 637 AARARLANLRDSYTNQFNRLNVTLSKMQASQNYLTQQLARL 677 A RL L Y QF ++ ++++Q++ ++LTQQLA L Sbjct: 410 ALNTRLTALESRYRKQFTAMDTLVAQLQSTGSFLTQQLANL 450 Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 115/219 (52%), Gaps = 10/219 (4%) Query: 10 TSAGP---LDVANLVNQLVSVESKSRLTPLASKADSFNALISAYGKLGTALTTYQNALAE 66 TSAG LD+ LV++LV+ E + L ++ + A +SAYG L AL+++Q ++ Sbjct: 5 TSAGVGSGLDIEGLVSKLVTAEGQPTTDRLNTQEATLQADLSAYGSLKGALSSFQTSVQA 64 Query: 67 LT-AAKFSAQKAAVSNTGRSSDGKSGNDAVSADINTDASTKAQAQIIQSAGFASGHLFKA 125 L A+ F + A S+T + +G+ AV+ + AQA ++S F++ Sbjct: 65 LKDASAFKVRTATSSDTDLFT-VTAGSAAVAGSFSISVDQLAQAAKVRSGDFSAETDVVG 123 Query: 126 GDSVAIKVGEASPSF-ITLKADATINGLRDTINAA--RAGVTASVVRDDAGDHLVLESNT 182 S+ I +G S SF I + AD T+ GLRD IN+A GV A++++ D G LVL S Sbjct: 124 EGSLKIDLG--SSSFNIAVGADTTLAGLRDAINSATDNPGVKATIIKVDTGSQLVLTSEK 181 Query: 183 AGTSKLLKVRANNSLSAISFDAQQSRPGAMTQTQAARDA 221 G + + + A ++ ++ D + +T Q+A+DA Sbjct: 182 VGAANTISITATDANASDGKDLSRLATANLTTVQSAQDA 220