BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0048.p (265 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776933.1| periplasmic amino acid-binding protein [Herb... 549 e-154 emb|CBA28910.1| hypothetical protein Csp_A09500 [Curvibacter put... 204 8e-51 ref|ZP_05117039.1| hypothetical protein SADFL11_4927 [Labrenzia ... 149 3e-34 ref|YP_433609.1| amino acid ABC transporter periplasmic protein ... 135 5e-30 ref|YP_003809337.1| predicted extracellular solute-binding prote... 130 2e-28 gb|ADP99812.1| extracellular solute-binding protein, family 3 [M... 130 3e-28 ref|ZP_01893246.1| ABC-type amino acid transport/signal transduc... 125 5e-27 ref|YP_001749698.1| extracellular solute-binding protein [Pseudo... 124 2e-26 ref|YP_004379797.1| extracellular solute-binding protein [Pseudo... 122 4e-26 ref|YP_957622.1| amino acid ABC transporter periplasmic protein ... 121 1e-25 >ref|YP_003776933.1| periplasmic amino acid-binding protein [Herbaspirillum seropedicae SmR1] gb|ADJ65025.1| periplasmic amino acid-binding protein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust. Identities = 265/265 (100%), Positives = 265/265 (100%) Query: 1 MFKLLSAYALSLAVMIAPAAGAAECTRLVVSADSDYAPLHWYDGKHLTGASIEIATRALE 60 MFKLLSAYALSLAVMIAPAAGAAECTRLVVSADSDYAPLHWYDGKHLTGASIEIATRALE Sbjct: 1 MFKLLSAYALSLAVMIAPAAGAAECTRLVVSADSDYAPLHWYDGKHLTGASIEIATRALE 60 Query: 61 ALNIPFEVRYVGPFHRVLKAAESGEVAMIASLKITPERQQYLAFTSVPLFVNPIAVFVAR 120 ALNIPFEVRYVGPFHRVLKAAESGEVAMIASLKITPERQQYLAFTSVPLFVNPIAVFVAR Sbjct: 61 ALNIPFEVRYVGPFHRVLKAAESGEVAMIASLKITPERQQYLAFTSVPLFVNPIAVFVAR 120 Query: 121 DRRFAYGGWKDLVGKRGAITLGNQFGGGFDEFMRDNLIIETAQKTYMNFTKLDSGRIDYL 180 DRRFAYGGWKDLVGKRGAITLGNQFGGGFDEFMRDNLIIETAQKTYMNFTKLDSGRIDYL Sbjct: 121 DRRFAYGGWKDLVGKRGAITLGNQFGGGFDEFMRDNLIIETAQKTYMNFTKLDSGRIDYL 180 Query: 181 LTGYYSGMIYLNQTQQQDRFMPLRPFVSETDNYLALSKASPCIKHLARINAQLETMQKRG 240 LTGYYSGMIYLNQTQQQDRFMPLRPFVSETDNYLALSKASPCIKHLARINAQLETMQKRG Sbjct: 181 LTGYYSGMIYLNQTQQQDRFMPLRPFVSETDNYLALSKASPCIKHLARINAQLETMQKRG 240 Query: 241 ELRAVLQKFETDLRIESTAAIPPLR 265 ELRAVLQKFETDLRIESTAAIPPLR Sbjct: 241 ELRAVLQKFETDLRIESTAAIPPLR 265 >emb|CBA28910.1| hypothetical protein Csp_A09500 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 286 Score = 204 bits (520), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 97/225 (43%), Positives = 142/225 (63%) Query: 23 AECTRLVVSADSDYAPLHWYDGKHLTGASIEIATRALEALNIPFEVRYVGPFHRVLKAAE 82 ++CTR+VV++D Y PLHWYDG+ L GASIEIA R L L I FE+R VGPF RV+ AE Sbjct: 47 SQCTRMVVTSDPAYPPLHWYDGETLQGASIEIAKRVLGDLKIDFEIRSVGPFPRVMALAE 106 Query: 83 SGEVAMIASLKITPERQQYLAFTSVPLFVNPIAVFVARDRRFAYGGWKDLVGKRGAITLG 142 GEV M+ +LK TPER+ +L + NP+A F ++D Y DL+G RGA+ G Sbjct: 107 RGEVDMVVTLKKTPERETFLLYPKTIALQNPVAAFTSKDLPLVYRDKADLIGMRGAMARG 166 Query: 143 NQFGGGFDEFMRDNLIIETAQKTYMNFTKLDSGRIDYLLTGYYSGMIYLNQTQQQDRFMP 202 N FG G DE++++ L ++ + +F+ + GR DY +TGYY+GM + + + F+ Sbjct: 167 NVFGNGLDEYIKEKLNVQEVNRPDASFSLMLLGRADYFITGYYTGMALILKRGDEANFVA 226 Query: 203 LRPFVSETDNYLALSKASPCIKHLARINAQLETMQKRGELRAVLQ 247 PF+ +T NYLAL++ C L +I+A+L ++K G L +L+ Sbjct: 227 KEPFLVDTPNYLALTRNGKCADKLEQIDARLAILKKTGVLDEILR 271 >ref|ZP_05117039.1| hypothetical protein SADFL11_4927 [Labrenzia alexandrii DFL-11] gb|EEE47638.1| hypothetical protein SADFL11_4927 [Labrenzia alexandrii DFL-11] Length = 270 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 116/221 (52%), Gaps = 5/221 (2%) Query: 10 LSLAVMIAPAAGA----AECTRLVVSADSDYAPLHWYDGKHLTGASIEIATRALEALNIP 65 L L ++ A +GA CTR+ SA DY P HW +G + GAS+++ + + + Sbjct: 6 LGLVLVFASISGALASDPNCTRVTASAHPDYPPYHWREGGRIVGASVDLNKMIFQEIGVS 65 Query: 66 FEVRYVGPFHRVLKAAESGEVAMIASLKITPERQQYLAFTSVPLFVNPIAVFVARDRRFA 125 F+ + GP+ RVLK AE+G++ + SLK T ER +L FT P F NP VF +RRF Sbjct: 66 FDAVFTGPWKRVLKTAENGDIDFLMSLKKTDERSAFLDFTDTPAFENPFTVFTLENRRFP 125 Query: 126 YGGWKDLVGKRGAITLGNQFGGGFDEFMRDNLIIETAQKTYMNFTKLDSGRIDYLLTGYY 185 GGW DL G+ GA G+++G FD ++ + L + N +L GRIDY++ G Y Sbjct: 126 LGGWNDLKGRYGAKNAGDRYGEPFDAYVANVLKLSDNFSFQDNVNQLLVGRIDYIIHGRY 185 Query: 186 SGMIYLNQTQQQDRFMPLRPFVSETDNYLALSKASPCIKHL 226 G Q + +P+ V + S SPC +HL Sbjct: 186 VGQAQFGAIQGGEDIVPVDWNVMNGFVHSGFSLNSPC-RHL 225 >ref|YP_433609.1| amino acid ABC transporter periplasmic protein [Hahella chejuensis KCTC 2396] gb|ABC29184.1| ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Hahella chejuensis KCTC 2396] Length = 285 Score = 135 bits (341), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 79/257 (30%), Positives = 129/257 (50%), Gaps = 9/257 (3%) Query: 12 LAVMIAPAAGAAECTRLVVSADSDYAPLHWYDGKH---LTGASIEIATRALEALNIPFEV 68 L ++ A C L V++D +Y P+ W D ++ + G +IEI A+ + E Sbjct: 9 LTALLQEPVWAKNCVSLTVTSDPNYPPISWQDKQNPHRIIGVAIEIVELAMADKGVKVES 68 Query: 69 RYVGPFHRVLKAAESGEVAMIASLKITPERQQYLAFTSVPLFVNPIAVFVARDRRFAYGG 128 +Y GP+ RVL + +S V MI+ L I+ ER+ L F P +P +FV F + Sbjct: 69 KYKGPWKRVLASTDS--VDMISGLYISEERRALLHFVQPPFMSDPNVIFVKEGHGFPFKS 126 Query: 129 WKDLVGKRGAITLGNQFGGGFDEFMRDNLIIETAQKTYMNFTKLDSGRIDYLLTGYYSGM 188 W+DL GK+G LG+ FG FDEF + +L +E + + +GR+DY L G Y G+ Sbjct: 127 WEDLKGKKGGARLGDSFGVEFDEFAKQHLNLERVGQFEQLYGMTMAGRLDYFLYGLYPGI 186 Query: 189 IYLNQ--TQQQDRFMPLRPFVSETDNYLALSKASPCIKHLARINAQLETMQKRGELRAVL 246 + +Q F+P ++E Y+A SK S CI + ++ +++ K G L ++ Sbjct: 187 SLAEELNLNRQLEFLPTP--ITEEGIYIAFSKTSNCIGYADYLSEKIKQYSKEGLLGELI 244 Query: 247 QKFETDLRIESTAAIPP 263 QK+ ++ A P Sbjct: 245 QKYMATWEKQNKPANSP 261 >ref|YP_003809337.1| predicted extracellular solute-binding protein [gamma proteobacterium HdN1] emb|CBL43670.1| predicted extracellular solute-binding protein [gamma proteobacterium HdN1] Length = 292 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 107/206 (51%) Query: 19 AAGAAECTRLVVSADSDYAPLHWYDGKHLTGASIEIATRALEALNIPFEVRYVGPFHRVL 78 A A +V+S Y PL W G HL GAS+++ T L I + GP+ RVL Sbjct: 50 AVAACRAGGVVISGGDTYPPLSWRRGDHLVGASVDMVTEILAGFGIHAKADEGGPWKRVL 109 Query: 79 KAAESGEVAMIASLKITPERQQYLAFTSVPLFVNPIAVFVARDRRFAYGGWKDLVGKRGA 138 A GEV ++ ++ E + +L + P+ + VF+ + F+Y W DL GK G+ Sbjct: 110 LRARDGEVDILLGVRKAREYEHFLVYLEPPITPSVQGVFMLKGHEFSYKDWSDLEGKSGS 169 Query: 139 ITLGNQFGGGFDEFMRDNLIIETAQKTYMNFTKLDSGRIDYLLTGYYSGMIYLNQTQQQD 198 ITLG F FD F + +L ++ ++ NF KL+ R+DY+L +YL + QD Sbjct: 170 ITLGTTFDKKFDAFAKSHLELQPVRRIEQNFFKLEKRRVDYMLAPSQPTQLYLKRFGYQD 229 Query: 199 RFMPLRPFVSETDNYLALSKASPCIK 224 + + + + + Y+A+SK SPCI+ Sbjct: 230 KIVAAQEPLMILEEYIAISKKSPCIQ 255 >gb|ADP99812.1| extracellular solute-binding protein, family 3 [Marinobacter adhaerens HP15] Length = 254 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 122/245 (49%), Gaps = 7/245 (2%) Query: 13 AVMIAPAAGAAE--CTRLVVSADSDYAPLHWYDGK---HLTGASIEIATRALEALNIPFE 67 A+ +AP + C L+VS + +Y PL W D + +L GA + E L + E Sbjct: 3 ALFLAPVHALPDPSCNTLIVSGNPEYPPLLWRDQERPGYLIGAVPALLKEITEPLGVNVE 62 Query: 68 VRYVGPFHRVLKAAESGEVAMIASLKITPERQQYLAFTSVPLFVNPIAVFVARDRRFAYG 127 V+ G + RV + A G++ M+A IT ER Y+ + P+ P AV+V + R F Y Sbjct: 63 VKDTGSWARVQRMARQGDIDMVAGAFITSERIGYMDYLLPPITHLPTAVWVPKGREFVYR 122 Query: 128 GWKDLVGKRGAITLGNQFGGGFDEFMRDNLIIETAQKTYMNFTKLDSGRIDYLLTGYYSG 187 W DLVGKRG+ + N FG FD + NL+IE + +F R+DY+L G Sbjct: 123 HWPDLVGKRGSTLINNSFGQNFDRYAEQNLLIEGVRSIEQSFQMALVDRVDYVLYEVLQG 182 Query: 188 MIYLNQTQQQDRFMPLRPFVSETDNYLALSKASPC--IKHLARINAQLETMQKRGELRAV 245 + L D+F+PL VS + SKA+PC + R+ +L + G + + Sbjct: 183 EVKLEYLGIADQFVPLPTPVSREGLFFTFSKAAPCNSFELRERLAERLYELVNSGRVEEL 242 Query: 246 LQKFE 250 +++++ Sbjct: 243 IRRYK 247 >ref|ZP_01893246.1| ABC-type amino acid transport/signal transduction system, periplasmic component/domain [Marinobacter algicola DG893] gb|EDM48635.1| ABC-type amino acid transport/signal transduction system, periplasmic component/domain [Marinobacter algicola DG893] Length = 308 Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 110/226 (48%), Gaps = 4/226 (1%) Query: 1 MFKLLSAYALSLAVMIAPAAGA-AECTRLVVSADSDYAPLHWYDGKH---LTGASIEIAT 56 +F L + LA+ +A A A C L VS + +Y PL W + L GA + Sbjct: 46 LFCTLGVWTSVLAIPVATQAAADTYCETLTVSGNPEYPPLLWRSAEKEGVLVGAVPALLR 105 Query: 57 RALEALNIPFEVRYVGPFHRVLKAAESGEVAMIASLKITPERQQYLAFTSVPLFVNPIAV 116 +E + + VR +G + RV A G++ M+A IT ER Y+ + P+ P AV Sbjct: 106 EIVEPMGLEVVVRDLGSWARVQHVARKGDIDMVAGAFITSERIGYMDYLLPPIAHLPTAV 165 Query: 117 FVARDRRFAYGGWKDLVGKRGAITLGNQFGGGFDEFMRDNLIIETAQKTYMNFTKLDSGR 176 +V + F Y W DL+GKRG+ + N FG FD + +NL IE + +F +GR Sbjct: 166 WVPKGGEFIYRHWPDLLGKRGSTLINNSFGQNFDRYADNNLQIEGVRSIEQSFKMALAGR 225 Query: 177 IDYLLTGYYSGMIYLNQTQQQDRFMPLRPFVSETDNYLALSKASPC 222 +DY+L G + L+ D F L P VS + SKASPC Sbjct: 226 VDYVLYEVLQGQVKLDNLGVADGFEALEPPVSREGLFFTFSKASPC 271 >ref|YP_001749698.1| extracellular solute-binding protein [Pseudomonas putida W619] gb|ACA73329.1| extracellular solute-binding protein family 3 [Pseudomonas putida W619] Length = 271 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 107/226 (47%), Gaps = 7/226 (3%) Query: 18 PAAGAAE--CTRLVVSADSDYAPLHWYDG---KHLTGASIEIATRALEALNIPFEVRYVG 72 P A AAE C +L + + +Y P W D + L GA+ ++ +AL + +V Y G Sbjct: 20 PQAWAAEDVCRQLTATGNPEYPPYLWRDPNDPQRLIGANADLLDYLGQALGLKMQVVYGG 79 Query: 73 PFHRVLKAAESGEVAMIASLKITPERQQYLAFTSVPLFVNPIAVFVARDRRFAYGGWKDL 132 P+ R + G + ++A +T RQQ F S P P V+V D FAY GW DL Sbjct: 80 PWSRAQEQVRKGRIDLMAGYFLTQARQQEADFISPPFLHTPSVVWVRLDAAFAYRGWSDL 139 Query: 133 VGKRGAITLGNQFGGGFDEFMRDNLIIETAQKTYMNFTKLDSGRIDYLLTGYYSGMIYLN 192 G++G + N G FD++ R NL +E F KL R DYL+ Y GM Sbjct: 140 KGRKGGTLVSNSHGQEFDDYARANLTLEAVPSARQAFEKLLHKRNDYLIYEQYPGMALAR 199 Query: 193 QTQQQDRFMPLRPFVSETDNYLALSKASPCIKHLARINAQLETMQK 238 ++ L P VS YLALS ASPC + R+ QL K Sbjct: 200 TLGMDEQLKVLDPPVSSEGLYLALSHASPC--NQPRLREQLAQKMK 243 >ref|YP_004379797.1| extracellular solute-binding protein [Pseudomonas mendocina NK-01] gb|AEB58045.1| extracellular solute-binding protein [Pseudomonas mendocina NK-01] Length = 277 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 108/231 (46%), Gaps = 4/231 (1%) Query: 1 MFKLLSAYALSLAVMIAPAAGAAECTRLVVSADSDYAPLHWYDGKH---LTGASIEIATR 57 +FK L + +LAVM + A A +C RLV + + +Y P W D ++ L GA++++ Sbjct: 6 LFKSLLLWC-ALAVMPSVALAAGKCERLVATGNPEYPPYLWRDPQNPQQLVGANVDMLKH 64 Query: 58 ALEALNIPFEVRYVGPFHRVLKAAESGEVAMIASLKITPERQQYLAFTSVPLFVNPIAVF 117 + L + +V Y GP+ R +G V ++A +T R + + + F P V+ Sbjct: 65 LAKELGVVIDVIYTGPWSRAQDEVRTGRVDLLAGAFLTLPRLESMDYVHPAFFFTPSVVW 124 Query: 118 VARDRRFAYGGWKDLVGKRGAITLGNQFGGGFDEFMRDNLIIETAQKTYMNFTKLDSGRI 177 V + F YG W DL G G +GN FG FD F + NL +E F KL GR Sbjct: 125 VRKGEAFPYGSWIDLQGHTGDTLVGNSFGQQFDTFAKQNLTLEGVSSLTQAFQKLLLGRT 184 Query: 178 DYLLTGYYSGMIYLNQTQQQDRFMPLRPFVSETDNYLALSKASPCIKHLAR 228 DY+L Y G+ D L P +S YL LS S C + R Sbjct: 185 DYVLYERYPGLALAETLGMDDDLEVLDPPISSEGLYLTLSHNSACNEPWLR 235 >ref|YP_957622.1| amino acid ABC transporter periplasmic protein [Marinobacter aquaeolei VT8] gb|ABM17435.1| amino acid ABC transporter substrate-binding protein, PAAT family [Marinobacter aquaeolei VT8] Length = 266 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/230 (33%), Positives = 112/230 (48%), Gaps = 5/230 (2%) Query: 25 CTRLVVSADSDYAPLHWYDGK---HLTGASIEIATRALEALNIPFEVRYVGPFHRVLKAA 81 C L VS + +Y PL W D K L GA E +E L I VR +G + RV + A Sbjct: 28 CDTLRVSGNPEYPPLLWPDIKSPDKLIGAVPEFLGEVVEPLGIKVNVRNIGSWARVQRLA 87 Query: 82 ESGEVAMIASLKITPERQQYLAFTSVPLFVNPIAVFVARDRRFAYGGWKDLVGKRGAITL 141 E GE+ ++A IT ER YL + P+ V+V R R F Y W DL GK+G+ + Sbjct: 88 ELGEIDLVAGAFITAERLGYLDYVLPPMIHLDTNVWVPRQRMFEYRHWPDLEGKQGSTLI 147 Query: 142 GNQFGGGFDEFMRDNLIIETAQKTYMNFTKLDSGRIDYLLTGYYSGMIYLNQTQQQDRFM 201 N FG FD F D+L I + + ++ D GRIDY+L G L + + F+ Sbjct: 148 DNSFGERFDSFAADHLDILGVRSIHQSYLMADIGRIDYVLYELLQGRAKLARYGMSNDFV 207 Query: 202 PLRPFVSETDNYLALSKASPCIKHLAR--INAQLETMQKRGELRAVLQKF 249 L P VS + A K S C R A+L + ++G L +++++ Sbjct: 208 ALEPPVSREGLFFAFPKLSRCNSKALREAFAARLLELTEQGRLEELIEEY 257